RNA–Protein interactions for RNA: ENST00000552085.1

SNRPF-204, Transcript of small nuclear ribonucleoprotein polypeptide F, humanhuman

TSL 3 BASIC

Gene SNRPF, Length 815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPF-204ENST00000552085 SUB1P53999 127 aaKnown RBP eCLIP8.52□□□□□ -1.052e-17■■■■■ 86.5
SNRPF-204ENST00000552085 EIF3GO75821 320 aaKnown RBP eCLIP7.62□□□□□ -1.197e-7■■■■■ 45
SNRPF-204ENST00000552085 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.97■□□□□ 0.951e-6■■■■■ 38.1
SNRPF-204ENST00000552085 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.6□□□□□ -0.554e-17■■■■□ 24
SNRPF-204ENST00000552085 NOLC1Q14978 699 aaKnown RBP eCLIP13.37□□□□□ -0.272e-6■■■■□ 23.7
SNRPF-204ENST00000552085 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.09□□□□□ -0.151e-6■■■■□ 22.8
SNRPF-204ENST00000552085 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.98□□□□□ -0.013e-7■■■■□ 22.7
SNRPF-204ENST00000552085 RPS3P23396 243 aaKnown RBP eCLIP11.34□□□□□ -0.593e-17■■■■□ 20
SNRPF-204ENST00000552085 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.17□□□□□ -0.31e-8■■■■□ 19.7
SNRPF-204ENST00000552085 DDX3XO00571 662 aaKnown RBP eCLIP11.76□□□□□ -0.535e-45■■■□□ 18.1
SNRPF-204ENST00000552085 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.25■□□□□ 0.191e-16■■■□□ 15.2
SNRPF-204ENST00000552085 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.65■□□□□ 0.18e-8■■■□□ 15.1
SNRPF-204ENST00000552085 LARP4Q71RC2 724 aaKnown RBP eCLIP10.89□□□□□ -0.672e-13■■■□□ 14.6
SNRPF-204ENST00000552085 XRCC6P12956 609 aaKnown RBP eCLIP13.48□□□□□ -0.259e-10■■□□□ 14.5
SNRPF-204ENST00000552085 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.75■■□□□ 1.076e-17■■□□□ 13.5
SNRPF-204ENST00000552085 SND1Q7KZF4 910 aaKnown RBP eCLIP12.99□□□□□ -0.337e-10■■□□□ 13.2
SNRPF-204ENST00000552085 EIF3DO15371 548 aaKnown RBP eCLIP12.7□□□□□ -0.388e-8■■□□□ 12
SNRPF-204ENST00000552085 AQRO60306 1485 aaKnown RBP eCLIP24.41■■□□□ 1.52e-6■■□□□ 11.9
SNRPF-204ENST00000552085 ZNF622Q969S3 477 aaKnown RBP eCLIP17.51■□□□□ 0.391e-8■□□□□ 10.8
SNRPF-204ENST00000552085 QKIQ96PU8 341 aaKnown RBP eCLIP11.51□□□□□ -0.571e-6■□□□□ 9.7
SNRPF-204ENST00000552085 FTOQ9C0B1 505 aaKnown RBP eCLIP15.18■□□□□ 0.026e-9■□□□□ 9.7
SNRPF-204ENST00000552085 TRA2AQ13595 282 aaKnown RBP eCLIP12.65□□□□□ -0.385e-6■□□□□ 8.9
SNRPF-204ENST00000552085 PABPC4Q13310 644 aaKnown RBP eCLIP15.8■□□□□ 0.121e-11■□□□□ 8.4
Retrieved 23 of 23 RNA–protein pairs in 5.9 ms