RNA–Protein interactions for RNA: ENST00000550869.5

ERBB3-216, Transcript of erb-b2 receptor tyrosine kinase 3, humanhuman

TSL 4

Gene ERBB3, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB3-216ENST00000550869 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.94■□□□□ 0.142e-13■□□□□ 8.8
ERBB3-216ENST00000550869 U2AF2P26368 475 aaKnown RBP eCLIP13.9□□□□□ -0.186e-13■□□□□ 10.9
ERBB3-216ENST00000550869 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.27□□□□□ -0.291e-10■■■□□ 17
ERBB3-216ENST00000550869 RBM22Q9NW64 420 aaKnown RBP eCLIP12.28□□□□□ -0.442e-10■■■■□ 24.2
ERBB3-216ENST00000550869 FXR2P51116 673 aaKnown RBP eCLIP13.65□□□□□ -0.221e-9■■□□□ 13.3
ERBB3-216ENST00000550869 U2AF1Q01081 240 aaKnown RBP eCLIP16.06■□□□□ 0.163e-9■□□□□ 9.6
ERBB3-216ENST00000550869 PPIGQ13427 754 aaKnown RBP eCLIP13.65□□□□□ -0.221e-8■■■□□ 14.9
ERBB3-216ENST00000550869 CDC40O60508 579 aaKnown RBP eCLIP10.94□□□□□ -0.663e-8■■■■■ 37.8
ERBB3-216ENST00000550869 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.94■□□□□ 0.463e-8■□□□□ 10
ERBB3-216ENST00000550869 GTF2F1P35269 517 aaKnown RBP eCLIP13.05□□□□□ -0.323e-8■■■□□ 17.7
ERBB3-216ENST00000550869 PRPF4O43172 522 aaKnown RBP eCLIP11.88□□□□□ -0.513e-8■■■□□ 17.4
ERBB3-216ENST00000550869 G3BP1Q13283 466 aaKnown RBP eCLIP14.93□□□□□ -0.021e-7■■■■■ 28.6
ERBB3-216ENST00000550869 EFTUD2Q15029 972 aaKnown RBP eCLIP12.02□□□□□ -0.492e-7■■■■□ 22.5
ERBB3-216ENST00000550869 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.06□□□□□ -0.85e-7■■□□□ 12.3
ERBB3-216ENST00000550869 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.61□□□□□ -0.235e-7■■■□□ 16.1
ERBB3-216ENST00000550869 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.18□□□□□ -0.146e-7■■■□□ 18.2
ERBB3-216ENST00000550869 DDX3XO00571 662 aaKnown RBP eCLIP12.85□□□□□ -0.357e-7■■■■□ 26.2
ERBB3-216ENST00000550869 RBFOX2O43251 390 aaKnown RBP eCLIP9.74□□□□□ -0.857e-7■■■■■ 43
ERBB3-216ENST00000550869 AQRO60306 1485 aaKnown RBP eCLIP21.07■□□□□ 0.968e-7■■■■□ 21.5
ERBB3-216ENST00000550869 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.29□□□□□ -0.69e-7■■■■□ 19.9
ERBB3-216ENST00000550869 RPS3P23396 243 aaKnown RBP eCLIP11.96□□□□□ -0.491e-6■□□□□ 11.3
ERBB3-216ENST00000550869 EIF3HO15372 352 aaKnown RBP eCLIP12.19□□□□□ -0.461e-6■■□□□ 14.2
ERBB3-216ENST00000550869 SF3B4Q15427 424 aaKnown RBP eCLIP10.71□□□□□ -0.691e-6■■■■□ 19.7
ERBB3-216ENST00000550869 YBX3P16989 372 aaKnown RBP eCLIP15.84■□□□□ 0.131e-6■■■■□ 20.3
ERBB3-216ENST00000550869 SF3A3Q12874 501 aaKnown RBP eCLIP11.52□□□□□ -0.572e-6■■■□□ 17
ERBB3-216ENST00000550869 HNRNPKP61978 463 aaKnown RBP eCLIP11.76□□□□□ -0.532e-6■■■■■ 26.9
ERBB3-216ENST00000550869 NOLC1Q14978 699 aaKnown RBP eCLIP13.15□□□□□ -0.32e-6■■□□□ 12.3
ERBB3-216ENST00000550869 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.07□□□□□ -0.163e-6■■□□□ 14.4
ERBB3-216ENST00000550869 ILF3Q12906 894 aaKnown RBP eCLIP11.76□□□□□ -0.533e-6■■■□□ 16.1
ERBB3-216ENST00000550869 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.96□□□□□ -0.654e-6■■□□□ 11.4
ERBB3-216ENST00000550869 RBM5P52756 815 aaKnown RBP eCLIP14.53□□□□□ -0.084e-6■■□□□ 12.4
ERBB3-216ENST00000550869 DDX6P26196 483 aaKnown RBP eCLIP12.54□□□□□ -0.45e-6■■■□□ 15
ERBB3-216ENST00000550869 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.53□□□□□ -0.48e-6■■□□□ 12.7
ERBB3-216ENST00000550869 RBM15Q96T37 977 aaKnown RBP eCLIP12.21□□□□□ -0.458e-6■■■■■ 30.1
Retrieved 34 of 34 RNA–protein pairs in 8.2 ms