RNA–Protein interactions for RNA: ENST00000549271.1

DDX54-206, Transcript of DEAD-box helicase 54, humanhuman

TSL 2

Gene DDX54, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-206ENST00000549271 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.77□□□□□ -0.371e-10■■■■■ 74.5
DDX54-206ENST00000549271 SF3B1O75533 1304 aaKnown RBP eCLIP13.47□□□□□ -0.259e-6■■■■■ 68.9
DDX54-206ENST00000549271 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.57■□□□□ 0.085e-9■■■■■ 55.3
DDX54-206ENST00000549271 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.76□□□□□ -0.378e-9■■■■■ 33.2
DDX54-206ENST00000549271 FXR2P51116 673 aaKnown RBP eCLIP13.35□□□□□ -0.271e-7■■■■■ 29.9
DDX54-206ENST00000549271 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.12□□□□□ -0.632e-6■■■■■ 29
DDX54-206ENST00000549271 METAP2P50579 478 aaKnown RBP eCLIP13.79□□□□□ -0.25e-7■■■□□ 16.5
DDX54-206ENST00000549271 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.19□□□□□ -0.466e-14■■■□□ 16.4
DDX54-206ENST00000549271 PUM1Q14671 1186 aaKnown RBP eCLIP14□□□□□ -0.172e-9■■■□□ 15.9
DDX54-206ENST00000549271 PABPC4Q13310 644 aaKnown RBP eCLIP15.14■□□□□ 0.013e-7■■■□□ 14.7
DDX54-206ENST00000549271 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.28■□□□□ 0.682e-7■■■□□ 14.6
DDX54-206ENST00000549271 YBX3P16989 372 aaKnown RBP eCLIP17.65■□□□□ 0.423e-7■■□□□ 13.8
DDX54-206ENST00000549271 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.69□□□□□ -0.546e-10■■□□□ 13.6
DDX54-206ENST00000549271 FMR1Q06787 632 aaKnown RBP eCLIP16.5■□□□□ 0.233e-6■■□□□ 12.6
DDX54-206ENST00000549271 ZNF622Q969S3 477 aaKnown RBP eCLIP16.68■□□□□ 0.264e-8■■□□□ 12.5
DDX54-206ENST00000549271 SUB1P53999 127 aaKnown RBP eCLIP8.94□□□□□ -0.986e-7■□□□□ 10.7
DDX54-206ENST00000549271 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.61□□□□□ -0.076e-7■□□□□ 8.8
DDX54-206ENST00000549271 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.88□□□□□ -0.031e-7■□□□□ 8.5
Retrieved 18 of 18 RNA–protein pairs in 9.4 ms