RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 NISCHQ9Y2I1 1504 aa17.8■□□□□ 0.44
TDP1-204ENST00000545686 CCDC180Q9P1Z9 1646 aa15.22■□□□□ 0.03
TDP1-204ENST00000545686 ZCCHC6Q5VYS8 1495 aaKnown RBP15.13■□□□□ 0.01
TDP1-204ENST00000545686 SHROOM4Q9ULL8 1493 aa15.06■□□□□ 0
TDP1-204ENST00000545686 SUPT5HO00267 1087 aaKnown RBP14.85□□□□□ -0.03
TDP1-204ENST00000545686 DCAF1Q9Y4B6 1507 aa14.72□□□□□ -0.05
TDP1-204ENST00000545686 MYO15BQ96JP2 1530 aa14.66□□□□□ -0.06
TDP1-204ENST00000545686 CHIC1Q5VXU3 224 aa14.63□□□□□ -0.07
TDP1-204ENST00000545686 HRCP23327 699 aa14.54□□□□□ -0.08
TDP1-204ENST00000545686 DCAF8L2P0C7V8 631 aa14.37□□□□□ -0.11
TDP1-204ENST00000545686 ABCC9O60706 1549 aa14.36□□□□□ -0.11
TDP1-204ENST00000545686 PCGF6Q9BYE7 350 aa14.3□□□□□ -0.12
TDP1-204ENST00000545686 SCRIBQ14160 1630 aa14.1□□□□□ -0.15
TDP1-204ENST00000545686 LOC105371045A0A1W2PR82 267 aa14.09□□□□□ -0.15
TDP1-204ENST00000545686 TRIM26Q12899 539 aaPredicted RBP14.09□□□□□ -0.15
TDP1-204ENST00000545686 RSF1Q96T23 1441 aaPredicted RBP14.09□□□□□ -0.15
TDP1-204ENST00000545686 RB1CC1Q8TDY2 1594 aa14.08□□□□□ -0.16
TDP1-204ENST00000545686 PPARGC1BQ86YN6 1023 aaKnown RBP14.05□□□□□ -0.16
TDP1-204ENST00000545686 ZEB1P37275 1124 aaPredicted RBP13.95□□□□□ -0.18
TDP1-204ENST00000545686 NACADO15069 1562 aa13.93□□□□□ -0.18
TDP1-204ENST00000545686 TRIM41Q8WV44 630 aa13.89□□□□□ -0.19
TDP1-204ENST00000545686 MROH2BQ7Z745 1585 aa13.79□□□□□ -0.2
TDP1-204ENST00000545686 BAZ1AQ9NRL2 1556 aaPredicted RBP13.79□□□□□ -0.2
TDP1-204ENST00000545686 EIF4G1Q04637 1599 aaKnown RBP13.77□□□□□ -0.2
TDP1-204ENST00000545686 WIZO95785 1651 aa13.77□□□□□ -0.21
TDP1-204ENST00000545686 CECR2Q9BXF3 1484 aa13.76□□□□□ -0.21
TDP1-204ENST00000545686 FAM9AQ8IZU1 332 aaPredicted RBP13.67□□□□□ -0.22
TDP1-204ENST00000545686 TOP2AP11388 1531 aaKnown RBP13.61□□□□□ -0.23
TDP1-204ENST00000545686 PELP1Q8IZL8 1130 aaKnown RBP13.6□□□□□ -0.23
TDP1-204ENST00000545686 SMARCA4P51532 1647 aa13.56□□□□□ -0.24
TDP1-204ENST00000545686 WRNQ14191 1432 aaPredicted RBP eCLIP13.55□□□□□ -0.24
TDP1-204ENST00000545686 UNC13AQ9UPW8 1703 aa13.53□□□□□ -0.24
TDP1-204ENST00000545686 SMARCA2P51531 1590 aa13.52□□□□□ -0.24
TDP1-204ENST00000545686 ABCC8Q09428 1581 aa13.47□□□□□ -0.25
TDP1-204ENST00000545686 EEA1Q15075 1411 aa13.47□□□□□ -0.25
TDP1-204ENST00000545686 SCAF1Q9H7N4 1312 aaKnown RBP13.46□□□□□ -0.25
TDP1-204ENST00000545686 CCDC88BA6NC98 1476 aa13.46□□□□□ -0.26
TDP1-204ENST00000545686 EHMT2Q96KQ7 1210 aa13.45□□□□□ -0.26
TDP1-204ENST00000545686 CEP162Q5TB80 1403 aa13.43□□□□□ -0.26
TDP1-204ENST00000545686 TNIKQ9UKE5 1360 aa13.42□□□□□ -0.26
TDP1-204ENST00000545686 CCER1Q8TC90 406 aaPredicted RBP13.4□□□□□ -0.26
TDP1-204ENST00000545686 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.38□□□□□ -0.27
TDP1-204ENST00000545686 PEG3Q9GZU2 1588 aa13.35□□□□□ -0.27
TDP1-204ENST00000545686 GOLGA3Q08378 1498 aa13.34□□□□□ -0.27
TDP1-204ENST00000545686 SOGA1O94964 1423 aa13.33□□□□□ -0.28
TDP1-204ENST00000545686 ACIN1Q9UKV3 1341 aaKnown RBP13.32□□□□□ -0.28
TDP1-204ENST00000545686 KIF21BO75037 1637 aa13.31□□□□□ -0.28
TDP1-204ENST00000545686 DIEXFQ68CQ4 756 aaKnown RBP13.28□□□□□ -0.28
TDP1-204ENST00000545686 CSRNP3Q8WYN3 585 aa13.28□□□□□ -0.28
TDP1-204ENST00000545686 CENPBP07199 599 aaPredicted RBP13.26□□□□□ -0.29
TDP1-204ENST00000545686 RUSC2Q8N2Y8 1516 aa13.25□□□□□ -0.29
TDP1-204ENST00000545686 CEP164Q9UPV0 1460 aa13.25□□□□□ -0.29
TDP1-204ENST00000545686 BICRAQ9NZM4 1560 aa13.24□□□□□ -0.29
TDP1-204ENST00000545686 NEUROD1Q13562 356 aa13.22□□□□□ -0.29
TDP1-204ENST00000545686 SYNJ1O43426 1573 aa13.22□□□□□ -0.29
TDP1-204ENST00000545686 BAZ1BQ9UIG0 1483 aaKnown RBP13.21□□□□□ -0.29
TDP1-204ENST00000545686 UBTFP17480 764 aaKnown RBP13.18□□□□□ -0.3
TDP1-204ENST00000545686 ZNF316A6NFI3 1004 aaPredicted RBP13.16□□□□□ -0.3
TDP1-204ENST00000545686 VPS8Q8N3P4 1428 aa13.14□□□□□ -0.31
TDP1-204ENST00000545686 CLIP1P30622 1438 aa13.13□□□□□ -0.31
TDP1-204ENST00000545686 GTF3C3Q9Y5Q9 886 aa13.12□□□□□ -0.31
TDP1-204ENST00000545686 TTBK1Q5TCY1 1321 aaPredicted RBP13.11□□□□□ -0.31
TDP1-204ENST00000545686 TOP2BQ02880 1626 aa13.1□□□□□ -0.31
TDP1-204ENST00000545686 BIVM-ERCC5R4GMW8 1640 aa13.1□□□□□ -0.31
TDP1-204ENST00000545686 ATAD2BQ9ULI0 1458 aa13.09□□□□□ -0.31
TDP1-204ENST00000545686 ERICH3Q5RHP9 1530 aa13.06□□□□□ -0.32
TDP1-204ENST00000545686 RAPGEF2Q9Y4G8 1499 aa13.04□□□□□ -0.32
TDP1-204ENST00000545686 MYT1Q01538 1121 aa13.02□□□□□ -0.33
TDP1-204ENST00000545686 CLSPNQ9HAW4 1339 aa13□□□□□ -0.33
TDP1-204ENST00000545686 APLP2Q06481 763 aa12.98□□□□□ -0.33
TDP1-204ENST00000545686 HNRNPUL2Q1KMD3 747 aaKnown RBP12.97□□□□□ -0.33
TDP1-204ENST00000545686 PABPN1Q86U42 306 aaKnown RBP eCLIP12.97□□□□□ -0.33
TDP1-204ENST00000545686 PRXQ9BXM0 1461 aa12.96□□□□□ -0.34
TDP1-204ENST00000545686 ARAP1Q96P48 1450 aa12.93□□□□□ -0.34
TDP1-204ENST00000545686 MIER1Q8N108 512 aa12.93□□□□□ -0.34
TDP1-204ENST00000545686 HMGXB3Q12766 1538 aa12.92□□□□□ -0.34
TDP1-204ENST00000545686 PRDM2Q13029 1718 aa12.91□□□□□ -0.34
TDP1-204ENST00000545686 CUX2O14529 1486 aa12.89□□□□□ -0.35
TDP1-204ENST00000545686 DHX57Q6P158 1386 aaKnown RBP12.88□□□□□ -0.35
TDP1-204ENST00000545686 RRBP1Q9P2E9 1410 aaKnown RBP12.88□□□□□ -0.35
TDP1-204ENST00000545686 YTHDC1Q96MU7 727 aaKnown RBP12.86□□□□□ -0.35
TDP1-204ENST00000545686 CUX1P39880 1505 aa12.85□□□□□ -0.35
TDP1-204ENST00000545686 KIF27Q86VH2 1401 aa12.83□□□□□ -0.36
TDP1-204ENST00000545686 NCAPD3P42695 1498 aa12.82□□□□□ -0.36
TDP1-204ENST00000545686 MAP3K1Q13233 1512 aa12.8□□□□□ -0.36
TDP1-204ENST00000545686 ARHGAP35Q9NRY4 1499 aa12.78□□□□□ -0.36
TDP1-204ENST00000545686 CFTRP13569 1480 aa12.77□□□□□ -0.36
TDP1-204ENST00000545686 CCNB3Q8WWL7 1395 aa12.76□□□□□ -0.37
TDP1-204ENST00000545686 TIAM1Q13009 1591 aa12.74□□□□□ -0.37
TDP1-204ENST00000545686 KANK4Q5T7N3 995 aaPredicted RBP12.74□□□□□ -0.37
TDP1-204ENST00000545686 RANGAP1P46060 587 aaPredicted RBP12.73□□□□□ -0.37
TDP1-204ENST00000545686 CFAP43Q8NDM7 1665 aa12.72□□□□□ -0.37
TDP1-204ENST00000545686 MAPKBP1O60336 1514 aa12.69□□□□□ -0.38
TDP1-204ENST00000545686 RAB3GAP2Q9H2M9 1393 aa12.64□□□□□ -0.39
TDP1-204ENST00000545686 LRRC9Q6ZRR7 1453 aa12.64□□□□□ -0.39
TDP1-204ENST00000545686 SUPT16HQ9Y5B9 1047 aaKnown RBP12.63□□□□□ -0.39
TDP1-204ENST00000545686 FHAD1B1AJZ9 1412 aa12.62□□□□□ -0.39
TDP1-204ENST00000545686 IGF1RP08069 1367 aa12.62□□□□□ -0.39
TDP1-204ENST00000545686 SETD5Q9C0A6 1442 aa12.62□□□□□ -0.39
TDP1-204ENST00000545686 PCF11O94913 1555 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms