RNA–Protein interactions for RNA: ENST00000544760.1

KDM5A-210, Transcript of lysine demethylase 5A, humanhuman

TSL 2

Gene KDM5A, Length 2,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM5A-210ENST00000544760 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.56■■□□□ 1.043e-23■■■■■ 559
KDM5A-210ENST00000544760 QKIQ96PU8 341 aaKnown RBP eCLIP19.7■□□□□ 0.741e-58■■■■■ 381.1
KDM5A-210ENST00000544760 PCBP2Q15366 365 aaKnown RBP eCLIP18.9■□□□□ 0.622e-6■■■■■ 64.4
KDM5A-210ENST00000544760 SF3B4Q15427 424 aaKnown RBP eCLIP20.56■□□□□ 0.885e-7■■■■■ 36.3
KDM5A-210ENST00000544760 PCBP1Q15365 356 aaKnown RBP eCLIP19.3■□□□□ 0.686e-7■■■■■ 35.7
KDM5A-210ENST00000544760 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.81■□□□□ 0.761e-7■■■■■ 35.3
KDM5A-210ENST00000544760 MATR3P43243 847 aaKnown RBP eCLIP21.95■■□□□ 1.12e-9■■■■■ 28.5
KDM5A-210ENST00000544760 HNRNPMP52272 730 aaKnown RBP eCLIP24.49■■□□□ 1.513e-8■■■■■ 27.9
KDM5A-210ENST00000544760 EIF3HO15372 352 aaKnown RBP eCLIP22.64■■□□□ 1.222e-6■■■■■ 27.8
KDM5A-210ENST00000544760 DDX59Q5T1V6 619 aaKnown RBP eCLIP20.17■□□□□ 0.822e-6■■■■□ 26.1
KDM5A-210ENST00000544760 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.34□□□□□ -0.272e-6■■■■□ 24.7
KDM5A-210ENST00000544760 PTBP1P26599 531 aaKnown RBP eCLIP19.16■□□□□ 0.661e-8■■■■□ 23.6
KDM5A-210ENST00000544760 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.34■□□□□ 0.691e-6■■■■□ 23
KDM5A-210ENST00000544760 GPKOWQ92917 476 aaPredicted RBP eCLIP20.9■□□□□ 0.942e-6■■■■□ 21.7
KDM5A-210ENST00000544760 ILF3Q12906 894 aaKnown RBP eCLIP18.48■□□□□ 0.551e-11■■■■□ 21.5
KDM5A-210ENST00000544760 U2AF2P26368 475 aaKnown RBP eCLIP24.38■■□□□ 1.492e-6■■■■□ 21.1
KDM5A-210ENST00000544760 FXR2P51116 673 aaKnown RBP eCLIP20.83■□□□□ 0.939e-7■■■■□ 20.8
KDM5A-210ENST00000544760 HNRNPKP61978 463 aaKnown RBP eCLIP18.2■□□□□ 0.57e-6■■■■□ 19.6
KDM5A-210ENST00000544760 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.27■□□□□ 0.993e-7■■■■□ 19.4
KDM5A-210ENST00000544760 CSTF2P33240 577 aaKnown RBP eCLIP19.68■□□□□ 0.741e-11■■■□□ 17.4
KDM5A-210ENST00000544760 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.44■□□□□ 0.382e-6■■■□□ 16.9
KDM5A-210ENST00000544760 RBM15Q96T37 977 aaKnown RBP eCLIP20.82■□□□□ 0.923e-7■■■□□ 16.8
KDM5A-210ENST00000544760 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.34■■□□□ 1.011e-6■■■□□ 15.4
KDM5A-210ENST00000544760 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.51■■□□□ 1.196e-7■■■□□ 15
KDM5A-210ENST00000544760 HLTFQ14527 1009 aaKnown RBP eCLIP21.74■■□□□ 1.078e-7■■■□□ 15
KDM5A-210ENST00000544760 PPIGQ13427 754 aaKnown RBP eCLIP19■□□□□ 0.633e-6■■□□□ 14.5
KDM5A-210ENST00000544760 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.5■□□□□ 0.391e-6■■□□□ 14.2
KDM5A-210ENST00000544760 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.38■■□□□ 1.339e-10■■□□□ 14
KDM5A-210ENST00000544760 U2AF1Q01081 240 aaKnown RBP eCLIP23.55■■□□□ 1.365e-6■■□□□ 12.9
KDM5A-210ENST00000544760 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.9■■□□□ 1.426e-7■■□□□ 12.7
KDM5A-210ENST00000544760 ZNF622Q969S3 477 aaKnown RBP eCLIP23.72■■□□□ 1.393e-6■■□□□ 12.5
KDM5A-210ENST00000544760 AQRO60306 1485 aaKnown RBP eCLIP26.57■■□□□ 1.846e-7■■□□□ 11.9
KDM5A-210ENST00000544760 EFTUD2Q15029 972 aaKnown RBP eCLIP20.73■□□□□ 0.916e-6■□□□□ 10.5
KDM5A-210ENST00000544760 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.49■■□□□ 1.031e-6■□□□□ 10.3
Retrieved 34 of 34 RNA–protein pairs in 16.5 ms