RNA–Protein interactions for RNA: ENST00000544585.5

CPSF7-222, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 2

Gene CPSF7, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-222	ENST00000544585	CHIC1	Q5VXU3	224 aa		20.27	■□□□□ 0.84
CPSF7-222	ENST00000544585	AEBP2	Q6ZN18	517 aa	Predicted RBP	19.96	■□□□□ 0.79
CPSF7-222	ENST00000544585	PHF23	Q9BUL5	403 aa	Predicted RBP	17.89	■□□□□ 0.45
CPSF7-222	ENST00000544585	SENP3	Q9H4L4	574 aa	Predicted RBP	16.88	■□□□□ 0.29
CPSF7-222	ENST00000544585	PLPPR3	Q6T4P5	718 aa		16.85	■□□□□ 0.29
CPSF7-222	ENST00000544585	ADRA2B	P18089	450 aa		15.71	■□□□□ 0.11
CPSF7-222	ENST00000544585	FOXD1	Q16676	465 aa		15.54	■□□□□ 0.08
CPSF7-222	ENST00000544585	PPP6R1	Q9UPN7	881 aa		15.53	■□□□□ 0.08
CPSF7-222	ENST00000544585	KCNA4	P22459	653 aa		15.44	■□□□□ 0.06
CPSF7-222	ENST00000544585	EHMT2	Q96KQ7	1210 aa		15.35	■□□□□ 0.05
CPSF7-222	ENST00000544585	PPP4R3CP	Q6ZMV5	832 aa		14.93	□□□□□ -0.02
CPSF7-222	ENST00000544585	NISCH	Q9Y2I1	1504 aa		14.92	□□□□□ -0.02
CPSF7-222	ENST00000544585	PIAS4	Q8N2W9	510 aa	Predicted RBP	14.89	□□□□□ -0.03
CPSF7-222	ENST00000544585	SLC4A1AP	Q9BWU0	796 aa	Known RBP	14.88	□□□□□ -0.03
CPSF7-222	ENST00000544585	NCBP3	Q53F19	620 aa	Known RBP	14.81	□□□□□ -0.04
CPSF7-222	ENST00000544585	CSRNP3	Q8WYN3	585 aa		14.76	□□□□□ -0.05
CPSF7-222	ENST00000544585	NPM3	O75607	178 aa	Known RBP	14.53	□□□□□ -0.08
CPSF7-222	ENST00000544585	CNKSR2	Q8WXI2	1034 aa		14.35	□□□□□ -0.11
CPSF7-222	ENST00000544585	SCAF1	Q9H7N4	1312 aa	Known RBP	14.34	□□□□□ -0.11
CPSF7-222	ENST00000544585	ZBTB22	O15209	634 aa		14.19	□□□□□ -0.14
CPSF7-222	ENST00000544585	MSH5	O43196	834 aa		14.07	□□□□□ -0.16
CPSF7-222	ENST00000544585	FOXD4L1	Q9NU39	408 aa		14.01	□□□□□ -0.17
CPSF7-222	ENST00000544585	DNAJC5B	Q9UF47	199 aa		13.95	□□□□□ -0.18
CPSF7-222	ENST00000544585	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.91	□□□□□ -0.18
CPSF7-222	ENST00000544585	RNF216	Q9NWF9	866 aa	Predicted RBP	13.87	□□□□□ -0.19
CPSF7-222	ENST00000544585	ABCC9	O60706	1549 aa		13.74	□□□□□ -0.21
CPSF7-222	ENST00000544585	HOXD11	P31277	338 aa	Predicted RBP	13.59	□□□□□ -0.23
CPSF7-222	ENST00000544585	DMRT2	Q9Y5R5	561 aa		13.57	□□□□□ -0.24
CPSF7-222	ENST00000544585	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.53	□□□□□ -0.24
CPSF7-222	ENST00000544585	SLC4A2	P04920	1241 aa		13.51	□□□□□ -0.25
CPSF7-222	ENST00000544585	RTN4	Q9NQC3	1192 aa	Known RBP	13.48	□□□□□ -0.25
CPSF7-222	ENST00000544585	SLC24A1	O60721	1099 aa		13.47	□□□□□ -0.25
CPSF7-222	ENST00000544585	ATXN8OS	P0DMR3	200 aa		13.45	□□□□□ -0.26
CPSF7-222	ENST00000544585	MYCN	P04198	464 aa	Predicted RBP	13.44	□□□□□ -0.26
CPSF7-222	ENST00000544585	CCDC180	Q9P1Z9	1646 aa		13.41	□□□□□ -0.26
CPSF7-222	ENST00000544585	FKBP8	Q14318	412 aa		13.34	□□□□□ -0.27
CPSF7-222	ENST00000544585	DCAF8L1	A6NGE4	600 aa		13.03	□□□□□ -0.32
CPSF7-222	ENST00000544585	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.02	□□□□□ -0.33	2e-8	■■□□□ 11.7
CPSF7-222	ENST00000544585	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13	□□□□□ -0.33
CPSF7-222	ENST00000544585	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13	□□□□□ -0.33
CPSF7-222	ENST00000544585	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.97	□□□□□ -0.33
CPSF7-222	ENST00000544585	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.97	□□□□□ -0.33
CPSF7-222	ENST00000544585	RB1CC1	Q8TDY2	1594 aa		12.97	□□□□□ -0.33
CPSF7-222	ENST00000544585	DCAF8L2	P0C7V8	631 aa		12.89	□□□□□ -0.35
CPSF7-222	ENST00000544585	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.86	□□□□□ -0.35
CPSF7-222	ENST00000544585	NACAD	O15069	1562 aa		12.84	□□□□□ -0.35
CPSF7-222	ENST00000544585		U3KPZ7	1027 aa	Predicted RBP	12.83	□□□□□ -0.36
CPSF7-222	ENST00000544585	DNAJC5	Q9H3Z4	198 aa		12.73	□□□□□ -0.37
CPSF7-222	ENST00000544585	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.72	□□□□□ -0.37
CPSF7-222	ENST00000544585	APLP2	Q06481	763 aa		12.7	□□□□□ -0.38
CPSF7-222	ENST00000544585	FBXO3	Q9UK99	471 aa		12.69	□□□□□ -0.38
CPSF7-222	ENST00000544585	MYO15B	Q96JP2	1530 aa		12.61	□□□□□ -0.39
CPSF7-222	ENST00000544585	SPDYE4	A6NLX3	237 aa		12.6	□□□□□ -0.39
CPSF7-222	ENST00000544585	BICRA	Q9NZM4	1560 aa		12.55	□□□□□ -0.4
CPSF7-222	ENST00000544585	UNC13A	Q9UPW8	1703 aa		12.51	□□□□□ -0.41
CPSF7-222	ENST00000544585	FBLN2	P98095	1184 aa		12.46	□□□□□ -0.41
CPSF7-222	ENST00000544585	VASP	P50552	380 aa	Predicted RBP	12.45	□□□□□ -0.42
CPSF7-222	ENST00000544585	CECR2	Q9BXF3	1484 aa		12.45	□□□□□ -0.42
CPSF7-222	ENST00000544585	PLCB2	Q00722	1185 aa		12.44	□□□□□ -0.42
CPSF7-222	ENST00000544585	MKRN4P	Q13434	485 aa	Predicted RBP	12.44	□□□□□ -0.42
CPSF7-222	ENST00000544585	SHROOM4	Q9ULL8	1493 aa		12.43	□□□□□ -0.42
CPSF7-222	ENST00000544585	PROM2	Q8N271	834 aa		12.43	□□□□□ -0.42
CPSF7-222	ENST00000544585	CC2D2A	Q9P2K1	1620 aa		12.37	□□□□□ -0.43
CPSF7-222	ENST00000544585	TRH	P20396	242 aa	Predicted RBP	12.34	□□□□□ -0.43
CPSF7-222	ENST00000544585	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.33	□□□□□ -0.44
CPSF7-222	ENST00000544585	DCAF1	Q9Y4B6	1507 aa		12.32	□□□□□ -0.44
CPSF7-222	ENST00000544585	HAP1	P54257	671 aa	Predicted RBP	12.3	□□□□□ -0.44
CPSF7-222	ENST00000544585	POLA2	Q14181	598 aa		12.3	□□□□□ -0.44
CPSF7-222	ENST00000544585	EIF4G1	Q04637	1599 aa	Known RBP	12.29	□□□□□ -0.44
CPSF7-222	ENST00000544585	ZCCHC6	Q5VYS8	1495 aa	Known RBP	12.27	□□□□□ -0.45
CPSF7-222	ENST00000544585	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.25	□□□□□ -0.45
CPSF7-222	ENST00000544585	CAPN15	O75808	1086 aa		12.22	□□□□□ -0.45
CPSF7-222	ENST00000544585	SCRIB	Q14160	1630 aa		12.21	□□□□□ -0.46
CPSF7-222	ENST00000544585	PKD2	Q13563	968 aa		12.2	□□□□□ -0.46
CPSF7-222	ENST00000544585	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.18	□□□□□ -0.46
CPSF7-222	ENST00000544585	BCAN	Q96GW7	911 aa		12.14	□□□□□ -0.47
CPSF7-222	ENST00000544585	VSIG10	Q8N0Z9	540 aa		12.12	□□□□□ -0.47
CPSF7-222	ENST00000544585	KLHL34	Q8N239	644 aa		12.12	□□□□□ -0.47
CPSF7-222	ENST00000544585	RNF39	Q9H2S5	420 aa		12.1	□□□□□ -0.47
CPSF7-222	ENST00000544585	SPOCK2	Q92563	424 aa		12.08	□□□□□ -0.48
CPSF7-222	ENST00000544585	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.08	□□□□□ -0.48
CPSF7-222	ENST00000544585	ECM2	O94769	699 aa	Predicted RBP	12.05	□□□□□ -0.48
CPSF7-222	ENST00000544585	ABCB7	O75027	752 aa		12.03	□□□□□ -0.48
CPSF7-222	ENST00000544585	BBX	Q8WY36	941 aa	Predicted RBP	12.03	□□□□□ -0.48
CPSF7-222	ENST00000544585	C1QBP	Q07021	282 aa	Known RBP	12.02	□□□□□ -0.49
CPSF7-222	ENST00000544585	STAG3	Q9UJ98	1225 aa		12.01	□□□□□ -0.49
CPSF7-222	ENST00000544585	CUX2	O14529	1486 aa		11.99	□□□□□ -0.49
CPSF7-222	ENST00000544585	PLCD3	Q8N3E9	789 aa		11.98	□□□□□ -0.49
CPSF7-222	ENST00000544585	ZNF692	Q9BU19	519 aa	Predicted RBP	11.98	□□□□□ -0.49
CPSF7-222	ENST00000544585	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.96	□□□□□ -0.49
CPSF7-222	ENST00000544585	CFAP44	Q96MT7	982 aa		11.94	□□□□□ -0.5
CPSF7-222	ENST00000544585	TAOK2	Q9UL54	1235 aa		11.94	□□□□□ -0.5
CPSF7-222	ENST00000544585	NCAPD3	P42695	1498 aa		11.92	□□□□□ -0.5
CPSF7-222	ENST00000544585	ERCC6	Q03468	1493 aa		11.92	□□□□□ -0.5
CPSF7-222	ENST00000544585	PRKCSH	P14314	528 aa	Predicted RBP	11.91	□□□□□ -0.5
CPSF7-222	ENST00000544585	NPM1	P06748	294 aa	Known RBP eCLIP	11.9	□□□□□ -0.5
CPSF7-222	ENST00000544585	SPDYE2B	A6NHP3	402 aa		11.89	□□□□□ -0.51
CPSF7-222	ENST00000544585	SPDYE6	P0CI01	402 aa		11.89	□□□□□ -0.51
CPSF7-222	ENST00000544585	SPDYE2	Q495Y8	402 aa		11.89	□□□□□ -0.51
CPSF7-222	ENST00000544585	MIER1	Q8N108	512 aa		11.89	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms