RNA–Protein interactions for RNA: ENST00000541817.5

CHFR-220, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-220ENST00000541817 NISCHQ9Y2I1 1504 aa25.37■■□□□ 1.65
CHFR-220ENST00000541817 ABCC9O60706 1549 aa24.04■■□□□ 1.44
CHFR-220ENST00000541817 DNAJC5BQ9UF47 199 aa23.35■■□□□ 1.33
CHFR-220ENST00000541817 CCDC180Q9P1Z9 1646 aa23.04■■□□□ 1.28
CHFR-220ENST00000541817 RB1CC1Q8TDY2 1594 aa22.37■■□□□ 1.17
CHFR-220ENST00000541817 PABPN1Q86U42 306 aaKnown RBP eCLIP22.33■■□□□ 1.17
CHFR-220ENST00000541817 DCAF8L2P0C7V8 631 aa22.01■■□□□ 1.11
CHFR-220ENST00000541817 NACADO15069 1562 aa21.98■■□□□ 1.11
CHFR-220ENST00000541817 UNC13AQ9UPW8 1703 aa21.97■■□□□ 1.11
CHFR-220ENST00000541817 DNAJC5Q9H3Z4 198 aa21.89■■□□□ 1.09
CHFR-220ENST00000541817 BICRAQ9NZM4 1560 aa21.82■■□□□ 1.08
CHFR-220ENST00000541817 CECR2Q9BXF3 1484 aa21.66■■□□□ 1.06
CHFR-220ENST00000541817 CC2D2AQ9P2K1 1620 aa21.61■■□□□ 1.05
CHFR-220ENST00000541817 EIF4G1Q04637 1599 aaKnown RBP21.32■■□□□ 1
CHFR-220ENST00000541817 MYO15BQ96JP2 1530 aa21.3■■□□□ 1
CHFR-220ENST00000541817 SHROOM4Q9ULL8 1493 aa21.2■□□□□ 0.98
CHFR-220ENST00000541817 SCRIBQ14160 1630 aa21.12■□□□□ 0.97
CHFR-220ENST00000541817 CUX2O14529 1486 aa20.88■□□□□ 0.93
CHFR-220ENST00000541817 ZCCHC6Q5VYS8 1495 aaKnown RBP20.83■□□□□ 0.93
CHFR-220ENST00000541817 DCAF1Q9Y4B6 1507 aa20.78■□□□□ 0.92
CHFR-220ENST00000541817 TRIM41Q8WV44 630 aa20.76■□□□□ 0.91
CHFR-220ENST00000541817 ERCC6Q03468 1493 aa20.75■□□□□ 0.91
CHFR-220ENST00000541817 NESP48681 1621 aa20.44■□□□□ 0.86
CHFR-220ENST00000541817 NCAPD3P42695 1498 aa20.32■□□□□ 0.84
CHFR-220ENST00000541817 THOC2Q8NI27 1593 aaKnown RBP20.28■□□□□ 0.84
CHFR-220ENST00000541817 ATAD2BQ9ULI0 1458 aa20.21■□□□□ 0.83
CHFR-220ENST00000541817 SMARCA2P51531 1590 aa20.19■□□□□ 0.82
CHFR-220ENST00000541817 KIF21AQ7Z4S6 1674 aa20.1■□□□□ 0.81
CHFR-220ENST00000541817 HMGXB3Q12766 1538 aa20.07■□□□□ 0.8
CHFR-220ENST00000541817 LAMC3Q9Y6N6 1575 aa20■□□□□ 0.79
CHFR-220ENST00000541817 SMARCA4P51532 1647 aa19.98■□□□□ 0.79
CHFR-220ENST00000541817 BAZ1BQ9UIG0 1483 aaKnown RBP19.97■□□□□ 0.79
CHFR-220ENST00000541817 BAZ1AQ9NRL2 1556 aaPredicted RBP19.93■□□□□ 0.78
CHFR-220ENST00000541817 PDS5BQ9NTI5 1447 aa19.92■□□□□ 0.78
CHFR-220ENST00000541817 OSCARQ8IYS5 282 aa19.88■□□□□ 0.77
CHFR-220ENST00000541817 MRC2Q9UBG0 1479 aa19.83■□□□□ 0.76
CHFR-220ENST00000541817 WDR62O43379 1518 aa19.77■□□□□ 0.76
CHFR-220ENST00000541817 RIMBP3CA6NJZ7 1639 aa19.75■□□□□ 0.75
CHFR-220ENST00000541817 RIMBP3BA6NNM3 1639 aa19.75■□□□□ 0.75
CHFR-220ENST00000541817 RIMBP3Q9UFD9 1639 aa19.75■□□□□ 0.75
CHFR-220ENST00000541817 CADPSQ9ULU8 1353 aa19.71■□□□□ 0.75
CHFR-220ENST00000541817 PEG3Q9GZU2 1588 aa19.69■□□□□ 0.74
CHFR-220ENST00000541817 TRHP20396 242 aaPredicted RBP19.65■□□□□ 0.74
CHFR-220ENST00000541817 AEBP2Q6ZN18 517 aaPredicted RBP19.63■□□□□ 0.73
CHFR-220ENST00000541817 MROH2BQ7Z745 1585 aa19.62■□□□□ 0.73
CHFR-220ENST00000541817 CEP164Q9UPV0 1460 aa19.59■□□□□ 0.73
CHFR-220ENST00000541817 CYB5RLQ6IPT4 315 aa19.57■□□□□ 0.72
CHFR-220ENST00000541817 ARHGEF11O15085 1522 aa19.56■□□□□ 0.72
CHFR-220ENST00000541817 FANCD2Q9BXW9 1451 aa19.52■□□□□ 0.72
CHFR-220ENST00000541817 URB2Q14146 1524 aaKnown RBP19.44■□□□□ 0.7
CHFR-220ENST00000541817 WIZO95785 1651 aa19.38■□□□□ 0.69
CHFR-220ENST00000541817 ZNF608Q9ULD9 1512 aaPredicted RBP19.36■□□□□ 0.69
CHFR-220ENST00000541817 ARAP1Q96P48 1450 aa19.35■□□□□ 0.69
CHFR-220ENST00000541817 CFTRP13569 1480 aa19.28■□□□□ 0.68
CHFR-220ENST00000541817 CHD1O14646 1710 aa19.22■□□□□ 0.67
CHFR-220ENST00000541817 IFT140Q96RY7 1462 aa19.2■□□□□ 0.66
CHFR-220ENST00000541817 FBLN2P98095 1184 aa19.19■□□□□ 0.66
CHFR-220ENST00000541817 EIF4G3O43432 1585 aaKnown RBP19.15■□□□□ 0.66
CHFR-220ENST00000541817 AQRO60306 1485 aaKnown RBP eCLIP19.1■□□□□ 0.65
CHFR-220ENST00000541817 RSF1Q96T23 1441 aaPredicted RBP19.08■□□□□ 0.64
CHFR-220ENST00000541817 TOPBP1Q92547 1522 aa19.05■□□□□ 0.64
CHFR-220ENST00000541817 PRDM2Q13029 1718 aa19.03■□□□□ 0.64
CHFR-220ENST00000541817 TOP2AP11388 1531 aaKnown RBP18.96■□□□□ 0.63
CHFR-220ENST00000541817 TARBP1Q13395 1621 aaKnown RBP18.94■□□□□ 0.62
CHFR-220ENST00000541817 ILDR1Q86SU0 546 aaPredicted RBP18.94■□□□□ 0.62
CHFR-220ENST00000541817 CLASP1Q7Z460 1538 aa18.9■□□□□ 0.62
CHFR-220ENST00000541817 DNMBPQ6XZF7 1577 aa18.88■□□□□ 0.61
CHFR-220ENST00000541817 TDRD9Q8NDG6 1382 aaKnown RBP18.86■□□□□ 0.61
CHFR-220ENST00000541817 ABCC8Q09428 1581 aa18.85■□□□□ 0.61
CHFR-220ENST00000541817 RAD54L2Q9Y4B4 1467 aa18.84■□□□□ 0.61
CHFR-220ENST00000541817 CCDC88BA6NC98 1476 aa18.84■□□□□ 0.61
CHFR-220ENST00000541817 SNAPC4Q5SXM2 1469 aa18.84■□□□□ 0.61
CHFR-220ENST00000541817 CHMP7Q8WUX9 453 aaPredicted RBP18.83■□□□□ 0.6
CHFR-220ENST00000541817 POLA1P09884 1462 aaPredicted RBP18.8■□□□□ 0.6
CHFR-220ENST00000541817 GAPVD1Q14C86 1478 aa18.8■□□□□ 0.6
CHFR-220ENST00000541817 SYNJ1O43426 1573 aa18.8■□□□□ 0.6
CHFR-220ENST00000541817 SOGA1O94964 1423 aa18.74■□□□□ 0.59
CHFR-220ENST00000541817 ERCC6L2Q5T890 1561 aa18.68■□□□□ 0.58
CHFR-220ENST00000541817 KDM4FA0A1W2PPD8 638 aa18.65■□□□□ 0.58
CHFR-220ENST00000541817 MAGI1Q96QZ7 1491 aaPredicted RBP18.65■□□□□ 0.58
CHFR-220ENST00000541817 SYNJ2O15056 1496 aa18.63■□□□□ 0.57
CHFR-220ENST00000541817 KIF13AQ9H1H9 1805 aa18.63■□□□□ 0.57
CHFR-220ENST00000541817 GRIN2BQ13224 1484 aa18.6■□□□□ 0.57
CHFR-220ENST00000541817 FGD5Q6ZNL6 1462 aa18.6■□□□□ 0.57
CHFR-220ENST00000541817 PBRM1Q86U86 1689 aa18.53■□□□□ 0.56
CHFR-220ENST00000541817 WDR97A6NE52 1622 aa18.52■□□□□ 0.56
CHFR-220ENST00000541817 FAM69CQ0P6D2 419 aa18.48■□□□□ 0.55
CHFR-220ENST00000541817 CEP170Q5SW79 1584 aa18.47■□□□□ 0.55
CHFR-220ENST00000541817 CUX1P39880 1505 aa18.47■□□□□ 0.55
CHFR-220ENST00000541817 GRIN2AQ12879 1464 aa18.39■□□□□ 0.53
CHFR-220ENST00000541817 KDM6BO15054 1643 aa18.38■□□□□ 0.53
CHFR-220ENST00000541817 TSPOAP1O95153 1857 aa18.36■□□□□ 0.53
CHFR-220ENST00000541817 ABCC10Q5T3U5 1492 aa18.36■□□□□ 0.53
CHFR-220ENST00000541817 SHROOM2Q13796 1616 aa18.34■□□□□ 0.53
CHFR-220ENST00000541817 ABCA5Q8WWZ7 1642 aa18.33■□□□□ 0.52
CHFR-220ENST00000541817 NUP160Q12769 1436 aa18.32■□□□□ 0.52
CHFR-220ENST00000541817 DIP2BQ9P265 1576 aa18.3■□□□□ 0.52
CHFR-220ENST00000541817 NPM1P06748 294 aaKnown RBP eCLIP18.29■□□□□ 0.52
CHFR-220ENST00000541817 PRG4Q92954 1404 aaPredicted RBP18.29■□□□□ 0.52
CHFR-220ENST00000541817 ABCA10Q8WWZ4 1543 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 264.9 ms