RNA–Protein interactions for RNA: ENST00000537641.5

CPSF7-218, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,728 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-218ENST00000537641 CUL7Q14999 1698 aa17.74■□□□□ 0.43
CPSF7-218ENST00000537641 RAD54L2Q9Y4B4 1467 aa17.72■□□□□ 0.43
CPSF7-218ENST00000537641 URB2Q14146 1524 aaKnown RBP17.7■□□□□ 0.42
CPSF7-218ENST00000537641 PDS5BQ9NTI5 1447 aa17.69■□□□□ 0.42
CPSF7-218ENST00000537641 MAP3K1Q13233 1512 aa17.67■□□□□ 0.42
CPSF7-218ENST00000537641 KIF21AQ7Z4S6 1674 aa17.67■□□□□ 0.42
CPSF7-218ENST00000537641 CCNB3Q8WWL7 1395 aa17.66■□□□□ 0.42
CPSF7-218ENST00000537641 CTTNBP2Q8WZ74 1663 aa17.66■□□□□ 0.42
CPSF7-218ENST00000537641 KANK4Q5T7N3 995 aaPredicted RBP17.64■□□□□ 0.41
CPSF7-218ENST00000537641 ABCA5Q8WWZ7 1642 aa17.64■□□□□ 0.41
CPSF7-218ENST00000537641 TIAM1Q13009 1591 aa17.6■□□□□ 0.41
CPSF7-218ENST00000537641 EFCAB5A4FU69 1503 aa17.6■□□□□ 0.41
CPSF7-218ENST00000537641 FHAD1B1AJZ9 1412 aa17.57■□□□□ 0.4
CPSF7-218ENST00000537641 CFAP43Q8NDM7 1665 aa17.57■□□□□ 0.4
CPSF7-218ENST00000537641 MAPKBP1O60336 1514 aa17.55■□□□□ 0.4
CPSF7-218ENST00000537641 SUPT16HQ9Y5B9 1047 aaKnown RBP17.54■□□□□ 0.4
CPSF7-218ENST00000537641 TARBP1Q13395 1621 aaKnown RBP17.54■□□□□ 0.4
CPSF7-218ENST00000537641 DNAJC5BQ9UF47 199 aa17.53■□□□□ 0.4
CPSF7-218ENST00000537641 GAPVD1Q14C86 1478 aa17.53■□□□□ 0.4
CPSF7-218ENST00000537641 PCF11O94913 1555 aaKnown RBP17.53■□□□□ 0.4
CPSF7-218ENST00000537641 RAB3GAP2Q9H2M9 1393 aa17.5■□□□□ 0.39
CPSF7-218ENST00000537641 AQRO60306 1485 aaKnown RBP eCLIP17.49■□□□□ 0.392e-7■■■■■ 40.5
CPSF7-218ENST00000537641 LRRC9Q6ZRR7 1453 aa17.49■□□□□ 0.39
CPSF7-218ENST00000537641 FYCO1Q9BQS8 1478 aa17.49■□□□□ 0.39
CPSF7-218ENST00000537641 TDRD9Q8NDG6 1382 aaKnown RBP17.48■□□□□ 0.39
CPSF7-218ENST00000537641 PBRM1Q86U86 1689 aa17.47■□□□□ 0.39
CPSF7-218ENST00000537641 SETD5Q9C0A6 1442 aa17.47■□□□□ 0.39
CPSF7-218ENST00000537641 SAMD9Q5K651 1589 aa17.45■□□□□ 0.38
CPSF7-218ENST00000537641 FHOD3Q2V2M9 1422 aa17.45■□□□□ 0.38
CPSF7-218ENST00000537641 MRC2Q9UBG0 1479 aa17.45■□□□□ 0.38
CPSF7-218ENST00000537641 CASKIN1Q8WXD9 1431 aa17.45■□□□□ 0.38
CPSF7-218ENST00000537641 FMN1Q68DA7 1419 aa17.42■□□□□ 0.38
CPSF7-218ENST00000537641 P3H3Q8IVL6 736 aa17.39■□□□□ 0.37
CPSF7-218ENST00000537641 TIMELESSQ9UNS1 1208 aa17.38■□□□□ 0.37
CPSF7-218ENST00000537641 SNAPC4Q5SXM2 1469 aa17.37■□□□□ 0.37
CPSF7-218ENST00000537641 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.37■□□□□ 0.371e-11■■□□□ 12.1
CPSF7-218ENST00000537641 PHLDB1Q86UU1 1377 aa17.36■□□□□ 0.37
CPSF7-218ENST00000537641 ADAMTS12P58397 1594 aa17.36■□□□□ 0.37
CPSF7-218ENST00000537641 THOC2Q8NI27 1593 aaKnown RBP17.35■□□□□ 0.37
CPSF7-218ENST00000537641 WDR62O43379 1518 aa17.35■□□□□ 0.37
CPSF7-218ENST00000537641 ITGAEP38570 1179 aa17.33■□□□□ 0.37
CPSF7-218ENST00000537641 LRRIQ1Q96JM4 1722 aa17.32■□□□□ 0.36
CPSF7-218ENST00000537641 TSHZ2Q9NRE2 1034 aa17.32■□□□□ 0.36
CPSF7-218ENST00000537641 IFT140Q96RY7 1462 aa17.31■□□□□ 0.36
CPSF7-218ENST00000537641 GRIN2BQ13224 1484 aa17.31■□□□□ 0.36
CPSF7-218ENST00000537641 IQGAP2Q13576 1575 aa17.29■□□□□ 0.36
CPSF7-218ENST00000537641 ATP1B4Q9UN42 357 aaPredicted RBP17.29■□□□□ 0.36
CPSF7-218ENST00000537641 CCER2I3L3R5 266 aa17.25■□□□□ 0.35
CPSF7-218ENST00000537641 PPP1R15AO75807 674 aaPredicted RBP17.24■□□□□ 0.35
CPSF7-218ENST00000537641 SUPT6HQ7KZ85 1726 aaKnown RBP17.23■□□□□ 0.35
CPSF7-218ENST00000537641 EHBP1L1Q8N3D4 1523 aa17.22■□□□□ 0.35
CPSF7-218ENST00000537641 HECW1Q76N89 1606 aa17.22■□□□□ 0.35
CPSF7-218ENST00000537641 MTUS2Q5JR59 1369 aa17.22■□□□□ 0.35
CPSF7-218ENST00000537641 FAM50AQ14320 339 aaKnown RBP17.21■□□□□ 0.35
CPSF7-218ENST00000537641 KCNH8Q96L42 1107 aa17.21■□□□□ 0.35
CPSF7-218ENST00000537641 CCDC18Q5T9S5 1454 aa17.21■□□□□ 0.35
CPSF7-218ENST00000537641 ZNF608Q9ULD9 1512 aaPredicted RBP17.21■□□□□ 0.35
CPSF7-218ENST00000537641 EIF4G3O43432 1585 aaKnown RBP17.2■□□□□ 0.34
CPSF7-218ENST00000537641 FGD6Q6ZV73 1430 aa17.2■□□□□ 0.34
CPSF7-218ENST00000537641 UGGT2Q9NYU1 1516 aa17.2■□□□□ 0.34
CPSF7-218ENST00000537641 DDX10Q13206 875 aaKnown RBP17.19■□□□□ 0.34
CPSF7-218ENST00000537641 SIN3AQ96ST3 1273 aa17.19■□□□□ 0.34
CPSF7-218ENST00000537641 ANP32EQ9BTT0 268 aa17.18■□□□□ 0.34
CPSF7-218ENST00000537641 ERCC6Q03468 1493 aa17.17■□□□□ 0.34
CPSF7-218ENST00000537641 PTPN23Q9H3S7 1636 aa17.17■□□□□ 0.34
CPSF7-218ENST00000537641 NCOA2Q15596 1464 aa17.15■□□□□ 0.34
CPSF7-218ENST00000537641 HFM1A2PYH4 1435 aa17.14■□□□□ 0.33
CPSF7-218ENST00000537641 UACAQ9BZF9 1416 aa17.14■□□□□ 0.33
CPSF7-218ENST00000537641 ANP32CO43423 234 aa17.14■□□□□ 0.33
CPSF7-218ENST00000537641 ARHGEF11O15085 1522 aa17.14■□□□□ 0.33
CPSF7-218ENST00000537641 KIAA0586Q9BVV6 1533 aa17.14■□□□□ 0.33
CPSF7-218ENST00000537641 MYOM3Q5VTT5 1437 aa17.14■□□□□ 0.33
CPSF7-218ENST00000537641 NEFLP07196 543 aa17.13■□□□□ 0.33
CPSF7-218ENST00000537641 FKBP8Q14318 412 aa17.13■□□□□ 0.33
CPSF7-218ENST00000537641 TONSLQ96HA7 1378 aa17.12■□□□□ 0.33
CPSF7-218ENST00000537641 GRIN2AQ12879 1464 aa17.12■□□□□ 0.33
CPSF7-218ENST00000537641 MAGI3Q5TCQ9 1506 aa17.11■□□□□ 0.33
CPSF7-218ENST00000537641 KIAA0556O60303 1618 aa17.11■□□□□ 0.33
CPSF7-218ENST00000537641 EPRSP07814 1512 aaKnown RBP17.11■□□□□ 0.33
CPSF7-218ENST00000537641 MAGI1Q96QZ7 1491 aaPredicted RBP17.1■□□□□ 0.33
CPSF7-218ENST00000537641 GCC2Q8IWJ2 1684 aa17.07■□□□□ 0.32
CPSF7-218ENST00000537641 DISP1Q96F81 1524 aa17.07■□□□□ 0.32
CPSF7-218ENST00000537641 BCANQ96GW7 911 aa17.05■□□□□ 0.32
CPSF7-218ENST00000537641 KDM5BQ9UGL1 1544 aa17.05■□□□□ 0.32
CPSF7-218ENST00000537641 TCOF1Q13428 1488 aaKnown RBP17.05■□□□□ 0.32
CPSF7-218ENST00000537641 SYNJ2O15056 1496 aa17.04■□□□□ 0.32
CPSF7-218ENST00000537641 CDK13Q14004 1512 aaKnown RBP17.04■□□□□ 0.32
CPSF7-218ENST00000537641 NAIPQ13075 1403 aa17.04■□□□□ 0.32
CPSF7-218ENST00000537641 PTPRKQ15262 1439 aa17.02■□□□□ 0.32
CPSF7-218ENST00000537641 RAPGEF6Q8TEU7 1601 aa17.02■□□□□ 0.32
CPSF7-218ENST00000537641 CEP170Q5SW79 1584 aa17.01■□□□□ 0.31
CPSF7-218ENST00000537641 AKNAQ7Z591 1439 aa17■□□□□ 0.31
CPSF7-218ENST00000537641 MIA2Q96PC5 1412 aa16.99■□□□□ 0.31
CPSF7-218ENST00000537641 NUP153P49790 1475 aaKnown RBP16.96■□□□□ 0.31
CPSF7-218ENST00000537641 TRIM52Q96A61 297 aa16.96■□□□□ 0.31
CPSF7-218ENST00000537641 HIRIP3Q9BW71 556 aaPredicted RBP16.95■□□□□ 0.3
CPSF7-218ENST00000537641 RBM19Q9Y4C8 960 aaKnown RBP16.95■□□□□ 0.3
CPSF7-218ENST00000537641 NUP160Q12769 1436 aa16.94■□□□□ 0.3
CPSF7-218ENST00000537641 CHMP7Q8WUX9 453 aaPredicted RBP16.94■□□□□ 0.3
CPSF7-218ENST00000537641 CARMIL2Q6F5E8 1435 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms