RNA–Protein interactions for RNA: ENST00000536515.5

LGR5-202, Transcript of leucine rich repeat containing G protein-coupled receptor 5, humanhuman

TSL 1 (best) BASIC

Gene LGR5, Length 2,664 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LGR5-202ENST00000536515 WRNQ14191 1432 aaPredicted RBP eCLIP20.18■□□□□ 0.822e-10■■■■■ 91.9
LGR5-202ENST00000536515 EFTUD2Q15029 972 aaKnown RBP eCLIP13.77□□□□□ -0.23e-6■■■■■ 41.9
LGR5-202ENST00000536515 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.02□□□□□ -0.322e-10■■■■■ 34
LGR5-202ENST00000536515 TIA1P31483 386 aaKnown RBP eCLIP12.58□□□□□ -0.41e-10■■■■■ 30
LGR5-202ENST00000536515 HNRNPKP61978 463 aaKnown RBP eCLIP11.67□□□□□ -0.542e-8■■■■■ 28.6
LGR5-202ENST00000536515 PTBP1P26599 531 aaKnown RBP eCLIP12.16□□□□□ -0.462e-8■■■■□ 25.2
LGR5-202ENST00000536515 TAF15Q92804 592 aaKnown RBP eCLIP11.02□□□□□ -0.657e-7■■■■□ 23.1
LGR5-202ENST00000536515 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.9□□□□□ -0.826e-7■■■■□ 23
LGR5-202ENST00000536515 RBFOX2O43251 390 aaKnown RBP eCLIP10.8□□□□□ -0.689e-8■■■■□ 22.1
LGR5-202ENST00000536515 HNRNPUQ00839 825 aaKnown RBP eCLIP18.23■□□□□ 0.511e-6■■■■□ 21.8
LGR5-202ENST00000536515 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.6■□□□□ 0.252e-6■■■■□ 20.9
LGR5-202ENST00000536515 TIAL1Q01085 375 aaKnown RBP eCLIP13.08□□□□□ -0.322e-8■■■■□ 20.6
LGR5-202ENST00000536515 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15□□□□□ -0.012e-7■■■□□ 18.9
LGR5-202ENST00000536515 SND1Q7KZF4 910 aaKnown RBP eCLIP14.47□□□□□ -0.091e-6■■■□□ 17.8
LGR5-202ENST00000536515 GTF2F1P35269 517 aaKnown RBP eCLIP15.38■□□□□ 0.052e-8■■■□□ 17.1
LGR5-202ENST00000536515 QKIQ96PU8 341 aaKnown RBP eCLIP13.51□□□□□ -0.257e-8■■■□□ 16.9
LGR5-202ENST00000536515 RBM5P52756 815 aaKnown RBP eCLIP14.3□□□□□ -0.123e-8■■■□□ 16.9
LGR5-202ENST00000536515 U2AF2P26368 475 aaKnown RBP eCLIP15.19■□□□□ 0.021e-6■■■□□ 16.6
LGR5-202ENST00000536515 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.04□□□□□ -0.485e-13■■■□□ 16.5
LGR5-202ENST00000536515 CSTF2P33240 577 aaKnown RBP eCLIP12.43□□□□□ -0.425e-11■■■□□ 15.9
LGR5-202ENST00000536515 HNRNPLP14866 589 aaKnown RBP eCLIP13.24□□□□□ -0.297e-8■■■□□ 15.1
LGR5-202ENST00000536515 RPS3P23396 243 aaKnown RBP eCLIP12.8□□□□□ -0.361e-6■■□□□ 14.4
LGR5-202ENST00000536515 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.26□□□□□ -0.454e-6■■□□□ 13.3
LGR5-202ENST00000536515 PPIGQ13427 754 aaKnown RBP eCLIP12.59□□□□□ -0.396e-7■■□□□ 13.2
LGR5-202ENST00000536515 EIF3HO15372 352 aaKnown RBP eCLIP14.33□□□□□ -0.121e-7■■□□□ 13.1
LGR5-202ENST00000536515 PCBP1Q15365 356 aaKnown RBP eCLIP13.3□□□□□ -0.289e-7■■□□□ 12.5
LGR5-202ENST00000536515 RBM15Q96T37 977 aaKnown RBP eCLIP13.88□□□□□ -0.192e-6■■□□□ 11.8
LGR5-202ENST00000536515 MATR3P43243 847 aaKnown RBP eCLIP14.5□□□□□ -0.094e-7■■□□□ 11.4
LGR5-202ENST00000536515 U2AF1Q01081 240 aaKnown RBP eCLIP16.83■□□□□ 0.291e-6■□□□□ 11.1
LGR5-202ENST00000536515 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.48■□□□□ 0.074e-7■□□□□ 11
LGR5-202ENST00000536515 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.66■□□□□ 0.429e-7■□□□□ 10.3
LGR5-202ENST00000536515 DDX3XO00571 662 aaKnown RBP eCLIP14.28□□□□□ -0.123e-21■□□□□ 9.7
LGR5-202ENST00000536515 PCBP2Q15366 365 aaKnown RBP eCLIP12.88□□□□□ -0.352e-6■□□□□ 8.9
LGR5-202ENST00000536515 SF3A3Q12874 501 aaKnown RBP eCLIP14.06□□□□□ -0.163e-7■□□□□ 8.6
LGR5-202ENST00000536515 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.27□□□□□ -0.133e-13■□□□□ 8.5
Retrieved 35 of 35 RNA–protein pairs in 16.1 ms