RNA–Protein interactions for RNA: ENST00000535181.5

CHFR-209, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 753 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-209ENST00000535181 NISCHQ9Y2I1 1504 aa49.57■■■■■ 5.53
CHFR-209ENST00000535181 CCDC180Q9P1Z9 1646 aa44.01■■■■■ 4.64
CHFR-209ENST00000535181 ABCC9O60706 1549 aa42.62■■■■■ 4.41
CHFR-209ENST00000535181 ZCCHC6Q5VYS8 1495 aaKnown RBP41.38■■■■■ 4.21
CHFR-209ENST00000535181 NACADO15069 1562 aa41.29■■■■■ 4.2
CHFR-209ENST00000535181 RB1CC1Q8TDY2 1594 aa41.24■■■■■ 4.19
CHFR-209ENST00000535181 MYO15BQ96JP2 1530 aa41.21■■■■■ 4.19
CHFR-209ENST00000535181 DCAF1Q9Y4B6 1507 aa41.12■■■■■ 4.17
CHFR-209ENST00000535181 DCAF8L2P0C7V8 631 aa41.07■■■■■ 4.17
CHFR-209ENST00000535181 UNC13AQ9UPW8 1703 aa40.28■■■■■ 4.04
CHFR-209ENST00000535181 SCRIBQ14160 1630 aa40.05■■■■■ 4
CHFR-209ENST00000535181 BICRAQ9NZM4 1560 aa39.97■■■■□ 3.99
CHFR-209ENST00000535181 PABPN1Q86U42 306 aaKnown RBP eCLIP39.82■■■■□ 3.97
CHFR-209ENST00000535181 SHROOM4Q9ULL8 1493 aa39.7■■■■□ 3.95
CHFR-209ENST00000535181 EIF4G1Q04637 1599 aaKnown RBP38.89■■■■□ 3.82
CHFR-209ENST00000535181 DNAJC5BQ9UF47 199 aa38.82■■■■□ 3.8
CHFR-209ENST00000535181 CC2D2AQ9P2K1 1620 aa38.63■■■■□ 3.78
CHFR-209ENST00000535181 CECR2Q9BXF3 1484 aa38.52■■■■□ 3.76
CHFR-209ENST00000535181 BAZ1AQ9NRL2 1556 aaPredicted RBP38.42■■■■□ 3.74
CHFR-209ENST00000535181 SMARCA4P51532 1647 aa38.4■■■■□ 3.74
CHFR-209ENST00000535181 MROH2BQ7Z745 1585 aa38.17■■■■□ 3.7
CHFR-209ENST00000535181 SMARCA2P51531 1590 aa38.11■■■■□ 3.69
CHFR-209ENST00000535181 ATAD2BQ9ULI0 1458 aa38.11■■■■□ 3.69
CHFR-209ENST00000535181 PEG3Q9GZU2 1588 aa38.1■■■■□ 3.69
CHFR-209ENST00000535181 NCAPD3P42695 1498 aa38.08■■■■□ 3.69
CHFR-209ENST00000535181 HMGXB3Q12766 1538 aa37.95■■■■□ 3.67
CHFR-209ENST00000535181 RSF1Q96T23 1441 aaPredicted RBP37.85■■■■□ 3.65
CHFR-209ENST00000535181 BAZ1BQ9UIG0 1483 aaKnown RBP37.8■■■■□ 3.64
CHFR-209ENST00000535181 WIZO95785 1651 aa37.76■■■■□ 3.63
CHFR-209ENST00000535181 TOP2AP11388 1531 aaKnown RBP37.44■■■■□ 3.58
CHFR-209ENST00000535181 LAMC3Q9Y6N6 1575 aa37.04■■■■□ 3.52
CHFR-209ENST00000535181 NESP48681 1621 aa36.97■■■■□ 3.51
CHFR-209ENST00000535181 SUPT5HO00267 1087 aaKnown RBP36.95■■■■□ 3.51
CHFR-209ENST00000535181 CCDC88BA6NC98 1476 aa36.94■■■■□ 3.5
CHFR-209ENST00000535181 CADPSQ9ULU8 1353 aa36.94■■■■□ 3.5
CHFR-209ENST00000535181 CFTRP13569 1480 aa36.82■■■■□ 3.48
CHFR-209ENST00000535181 PDS5BQ9NTI5 1447 aa36.74■■■■□ 3.47
CHFR-209ENST00000535181 ERCC6Q03468 1493 aa36.74■■■■□ 3.47
CHFR-209ENST00000535181 PRDM2Q13029 1718 aa36.6■■■■□ 3.45
CHFR-209ENST00000535181 KIF21AQ7Z4S6 1674 aa36.6■■■■□ 3.45
CHFR-209ENST00000535181 FANCD2Q9BXW9 1451 aa36.51■■■■□ 3.44
CHFR-209ENST00000535181 CEP164Q9UPV0 1460 aa36.45■■■■□ 3.43
CHFR-209ENST00000535181 THOC2Q8NI27 1593 aaKnown RBP36.44■■■■□ 3.42
CHFR-209ENST00000535181 MRC2Q9UBG0 1479 aa36.35■■■■□ 3.41
CHFR-209ENST00000535181 CUX2O14529 1486 aa36.33■■■■□ 3.41
CHFR-209ENST00000535181 WDR62O43379 1518 aa36.25■■■■□ 3.39
CHFR-209ENST00000535181 URB2Q14146 1524 aaKnown RBP36.13■■■■□ 3.37
CHFR-209ENST00000535181 ABCC8Q09428 1581 aa36.04■■■■□ 3.36
CHFR-209ENST00000535181 DNMBPQ6XZF7 1577 aa35.98■■■■□ 3.35
CHFR-209ENST00000535181 TOPBP1Q92547 1522 aa35.97■■■■□ 3.35
CHFR-209ENST00000535181 CUX1P39880 1505 aa35.8■■■■□ 3.32
CHFR-209ENST00000535181 IFT140Q96RY7 1462 aa35.7■■■■□ 3.31
CHFR-209ENST00000535181 POLA1P09884 1462 aaPredicted RBP35.68■■■■□ 3.3
CHFR-209ENST00000535181 WRNQ14191 1432 aaPredicted RBP eCLIP35.67■■■■□ 3.31e-6■■■■■ 52.5
CHFR-209ENST00000535181 FGD5Q6ZNL6 1462 aa35.62■■■■□ 3.29
CHFR-209ENST00000535181 BIVM-ERCC5R4GMW8 1640 aa35.61■■■■□ 3.29
CHFR-209ENST00000535181 TOP2BQ02880 1626 aa35.61■■■■□ 3.29
CHFR-209ENST00000535181 TARBP1Q13395 1621 aaKnown RBP35.58■■■■□ 3.29
CHFR-209ENST00000535181 SYNJ1O43426 1573 aa35.57■■■■□ 3.28
CHFR-209ENST00000535181 SOGA1O94964 1423 aa35.5■■■■□ 3.27
CHFR-209ENST00000535181 RAD54L2Q9Y4B4 1467 aa35.47■■■■□ 3.27
CHFR-209ENST00000535181 ZNF608Q9ULD9 1512 aaPredicted RBP35.45■■■■□ 3.27
CHFR-209ENST00000535181 WDR97A6NE52 1622 aa35.4■■■■□ 3.26
CHFR-209ENST00000535181 EIF4G3O43432 1585 aaKnown RBP35.38■■■■□ 3.25
CHFR-209ENST00000535181 ABCA10Q8WWZ4 1543 aa35.34■■■■□ 3.25
CHFR-209ENST00000535181 AQRO60306 1485 aaKnown RBP eCLIP35.27■■■■□ 3.24
CHFR-209ENST00000535181 TDRD9Q8NDG6 1382 aaKnown RBP35.24■■■■□ 3.23
CHFR-209ENST00000535181 ABCA5Q8WWZ7 1642 aa35.18■■■■□ 3.22
CHFR-209ENST00000535181 GAPVD1Q14C86 1478 aa35.13■■■■□ 3.21
CHFR-209ENST00000535181 GRIN2BQ13224 1484 aa35.1■■■■□ 3.21
CHFR-209ENST00000535181 PBRM1Q86U86 1689 aa35.05■■■■□ 3.2
CHFR-209ENST00000535181 MAGI1Q96QZ7 1491 aaPredicted RBP35.01■■■■□ 3.19
CHFR-209ENST00000535181 SNAPC4Q5SXM2 1469 aa34.99■■■■□ 3.19
CHFR-209ENST00000535181 TRIM41Q8WV44 630 aa34.95■■■■□ 3.19
CHFR-209ENST00000535181 ERICH3Q5RHP9 1530 aa34.94■■■■□ 3.18
CHFR-209ENST00000535181 KIF27Q86VH2 1401 aa34.91■■■■□ 3.18
CHFR-209ENST00000535181 SYNJ2O15056 1496 aa34.85■■■■□ 3.17
CHFR-209ENST00000535181 CHD1O14646 1710 aa34.85■■■■□ 3.17
CHFR-209ENST00000535181 ADAMTS12P58397 1594 aa34.82■■■■□ 3.16
CHFR-209ENST00000535181 DNAJC5Q9H3Z4 198 aa34.8■■■■□ 3.16
CHFR-209ENST00000535181 OSCARQ8IYS5 282 aa34.79■■■■□ 3.16
CHFR-209ENST00000535181 FHAD1B1AJZ9 1412 aa34.75■■■■□ 3.15
CHFR-209ENST00000535181 CHMP7Q8WUX9 453 aaPredicted RBP34.73■■■■□ 3.15
CHFR-209ENST00000535181 CHIC1Q5VXU3 224 aa34.72■■■■□ 3.15
CHFR-209ENST00000535181 IGF1RP08069 1367 aa34.72■■■■□ 3.15
CHFR-209ENST00000535181 FBLN2P98095 1184 aa34.71■■■■□ 3.15
CHFR-209ENST00000535181 CUL7Q14999 1698 aa34.68■■■■□ 3.14
CHFR-209ENST00000535181 GRIN2AQ12879 1464 aa34.65■■■■□ 3.14
CHFR-209ENST00000535181 RUSC2Q8N2Y8 1516 aa34.61■■■■□ 3.13
CHFR-209ENST00000535181 CLASP1Q7Z460 1538 aa34.52■■■■□ 3.12
CHFR-209ENST00000535181 CARMIL1Q5VZK9 1371 aa34.51■■■■□ 3.12
CHFR-209ENST00000535181 NUP160Q12769 1436 aa34.51■■■■□ 3.12
CHFR-209ENST00000535181 EEA1Q15075 1411 aa34.49■■■■□ 3.11
CHFR-209ENST00000535181 CEP170Q5SW79 1584 aa34.45■■■■□ 3.11
CHFR-209ENST00000535181 RAPGEF2Q9Y4G8 1499 aa34.37■■■■□ 3.09
CHFR-209ENST00000535181 PRXQ9BXM0 1461 aa34.34■■■■□ 3.09
CHFR-209ENST00000535181 CSRNP3Q8WYN3 585 aa34.3■■■■□ 3.08
CHFR-209ENST00000535181 ARHGEF11O15085 1522 aa34.27■■■■□ 3.08
CHFR-209ENST00000535181 KIAA0586Q9BVV6 1533 aa34.24■■■■□ 3.07
CHFR-209ENST00000535181 RIMBP3CA6NJZ7 1639 aa34.23■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 145.6 ms