RNA–Protein interactions for RNA: ENST00000534551.2

VPS11-205, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS11, Length 585 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-205ENST00000534551 NISCHQ9Y2I1 1504 aa34.09■■■■□ 3.05
VPS11-205ENST00000534551 CCDC180Q9P1Z9 1646 aa30.31■■■□□ 2.44
VPS11-205ENST00000534551 ABCC9O60706 1549 aa29.52■■■□□ 2.32
VPS11-205ENST00000534551 ZCCHC6Q5VYS8 1495 aaKnown RBP28.47■■■□□ 2.15
VPS11-205ENST00000534551 RB1CC1Q8TDY2 1594 aa28.4■■■□□ 2.14
VPS11-205ENST00000534551 NACADO15069 1562 aa28.37■■■□□ 2.13
VPS11-205ENST00000534551 DCAF8L2P0C7V8 631 aa28.33■■■□□ 2.13
VPS11-205ENST00000534551 MYO15BQ96JP2 1530 aa28.17■■■□□ 2.1
VPS11-205ENST00000534551 DCAF1Q9Y4B6 1507 aa28.14■■■□□ 2.1
VPS11-205ENST00000534551 UNC13AQ9UPW8 1703 aa28.01■■■□□ 2.07
VPS11-205ENST00000534551 SCRIBQ14160 1630 aa27.76■■■□□ 2.03
VPS11-205ENST00000534551 BICRAQ9NZM4 1560 aa27.63■■■□□ 2.01
VPS11-205ENST00000534551 PABPN1Q86U42 306 aaKnown RBP eCLIP27.54■■■□□ 2
VPS11-205ENST00000534551 SHROOM4Q9ULL8 1493 aa27.16■■□□□ 1.94
VPS11-205ENST00000534551 DNAJC5BQ9UF47 199 aa26.9■■□□□ 1.9
VPS11-205ENST00000534551 EIF4G1Q04637 1599 aaKnown RBP26.85■■□□□ 1.89
VPS11-205ENST00000534551 CC2D2AQ9P2K1 1620 aa26.73■■□□□ 1.87
VPS11-205ENST00000534551 CECR2Q9BXF3 1484 aa26.6■■□□□ 1.85
VPS11-205ENST00000534551 SMARCA4P51532 1647 aa26.5■■□□□ 1.83
VPS11-205ENST00000534551 BAZ1AQ9NRL2 1556 aaPredicted RBP26.4■■□□□ 1.82
VPS11-205ENST00000534551 MROH2BQ7Z745 1585 aa26.34■■□□□ 1.81
VPS11-205ENST00000534551 ATAD2BQ9ULI0 1458 aa26.23■■□□□ 1.79
VPS11-205ENST00000534551 SMARCA2P51531 1590 aa26.19■■□□□ 1.78
VPS11-205ENST00000534551 PEG3Q9GZU2 1588 aa26.16■■□□□ 1.78
VPS11-205ENST00000534551 WIZO95785 1651 aa26.13■■□□□ 1.77
VPS11-205ENST00000534551 NCAPD3P42695 1498 aa26.12■■□□□ 1.77
VPS11-205ENST00000534551 HMGXB3Q12766 1538 aa26.1■■□□□ 1.77
VPS11-205ENST00000534551 BAZ1BQ9UIG0 1483 aaKnown RBP26.04■■□□□ 1.76
VPS11-205ENST00000534551 RSF1Q96T23 1441 aaPredicted RBP26.01■■□□□ 1.75
VPS11-205ENST00000534551 TOP2AP11388 1531 aaKnown RBP25.78■■□□□ 1.72
VPS11-205ENST00000534551 NESP48681 1621 aa25.63■■□□□ 1.69
VPS11-205ENST00000534551 LAMC3Q9Y6N6 1575 aa25.49■■□□□ 1.67
VPS11-205ENST00000534551 CCDC88BA6NC98 1476 aa25.43■■□□□ 1.66
VPS11-205ENST00000534551 SUPT5HO00267 1087 aaKnown RBP25.43■■□□□ 1.66
VPS11-205ENST00000534551 KIF21AQ7Z4S6 1674 aa25.42■■□□□ 1.66
VPS11-205ENST00000534551 ERCC6Q03468 1493 aa25.37■■□□□ 1.65
VPS11-205ENST00000534551 CADPSQ9ULU8 1353 aa25.36■■□□□ 1.65
VPS11-205ENST00000534551 PRDM2Q13029 1718 aa25.33■■□□□ 1.65
VPS11-205ENST00000534551 CFTRP13569 1480 aa25.28■■□□□ 1.64
VPS11-205ENST00000534551 THOC2Q8NI27 1593 aaKnown RBP25.25■■□□□ 1.63
VPS11-205ENST00000534551 PDS5BQ9NTI5 1447 aa25.21■■□□□ 1.63
VPS11-205ENST00000534551 FANCD2Q9BXW9 1451 aa25.16■■□□□ 1.62
VPS11-205ENST00000534551 CEP164Q9UPV0 1460 aa25.12■■□□□ 1.61
VPS11-205ENST00000534551 MRC2Q9UBG0 1479 aa25.05■■□□□ 1.6
VPS11-205ENST00000534551 CUX2O14529 1486 aa25.01■■□□□ 1.59
VPS11-205ENST00000534551 WDR62O43379 1518 aa25.01■■□□□ 1.59
VPS11-205ENST00000534551 URB2Q14146 1524 aaKnown RBP24.96■■□□□ 1.59
VPS11-205ENST00000534551 TOPBP1Q92547 1522 aa24.8■■□□□ 1.56
VPS11-205ENST00000534551 DNMBPQ6XZF7 1577 aa24.8■■□□□ 1.56
VPS11-205ENST00000534551 CUX1P39880 1505 aa24.71■■□□□ 1.55
VPS11-205ENST00000534551 ABCC8Q09428 1581 aa24.68■■□□□ 1.54
VPS11-205ENST00000534551 POLA1P09884 1462 aaPredicted RBP24.59■■□□□ 1.53
VPS11-205ENST00000534551 SYNJ1O43426 1573 aa24.59■■□□□ 1.53
VPS11-205ENST00000534551 FGD5Q6ZNL6 1462 aa24.58■■□□□ 1.53
VPS11-205ENST00000534551 TARBP1Q13395 1621 aaKnown RBP24.57■■□□□ 1.52
VPS11-205ENST00000534551 BIVM-ERCC5R4GMW8 1640 aa24.55■■□□□ 1.52
VPS11-205ENST00000534551 IFT140Q96RY7 1462 aa24.53■■□□□ 1.52
VPS11-205ENST00000534551 ZNF608Q9ULD9 1512 aaPredicted RBP24.52■■□□□ 1.52
VPS11-205ENST00000534551 RAD54L2Q9Y4B4 1467 aa24.51■■□□□ 1.51
VPS11-205ENST00000534551 WRNQ14191 1432 aaPredicted RBP eCLIP24.51■■□□□ 1.51
VPS11-205ENST00000534551 TOP2BQ02880 1626 aa24.5■■□□□ 1.51
VPS11-205ENST00000534551 EIF4G3O43432 1585 aaKnown RBP24.5■■□□□ 1.51
VPS11-205ENST00000534551 WDR97A6NE52 1622 aa24.5■■□□□ 1.51
VPS11-205ENST00000534551 SOGA1O94964 1423 aa24.41■■□□□ 1.5
VPS11-205ENST00000534551 AQRO60306 1485 aaKnown RBP eCLIP24.34■■□□□ 1.496e-11■■■■□ 25.1
VPS11-205ENST00000534551 PBRM1Q86U86 1689 aa24.3■■□□□ 1.48
VPS11-205ENST00000534551 ABCA5Q8WWZ7 1642 aa24.29■■□□□ 1.48
VPS11-205ENST00000534551 ABCA10Q8WWZ4 1543 aa24.29■■□□□ 1.48
VPS11-205ENST00000534551 TDRD9Q8NDG6 1382 aaKnown RBP24.29■■□□□ 1.48
VPS11-205ENST00000534551 CHD1O14646 1710 aa24.21■■□□□ 1.47
VPS11-205ENST00000534551 GAPVD1Q14C86 1478 aa24.18■■□□□ 1.46
VPS11-205ENST00000534551 SNAPC4Q5SXM2 1469 aa24.18■■□□□ 1.46
VPS11-205ENST00000534551 GRIN2BQ13224 1484 aa24.13■■□□□ 1.45
VPS11-205ENST00000534551 ADAMTS12P58397 1594 aa24.07■■□□□ 1.44
VPS11-205ENST00000534551 MAGI1Q96QZ7 1491 aaPredicted RBP24.07■■□□□ 1.44
VPS11-205ENST00000534551 ERICH3Q5RHP9 1530 aa24■■□□□ 1.43
VPS11-205ENST00000534551 DNAJC5Q9H3Z4 198 aa23.98■■□□□ 1.43
VPS11-205ENST00000534551 SYNJ2O15056 1496 aa23.97■■□□□ 1.43
VPS11-205ENST00000534551 KIF27Q86VH2 1401 aa23.94■■□□□ 1.42
VPS11-205ENST00000534551 FBLN2P98095 1184 aa23.94■■□□□ 1.42
VPS11-205ENST00000534551 TRIM41Q8WV44 630 aa23.93■■□□□ 1.42
VPS11-205ENST00000534551 RUSC2Q8N2Y8 1516 aa23.92■■□□□ 1.42
VPS11-205ENST00000534551 GRIN2AQ12879 1464 aa23.87■■□□□ 1.41
VPS11-205ENST00000534551 CUL7Q14999 1698 aa23.87■■□□□ 1.41
VPS11-205ENST00000534551 OSCARQ8IYS5 282 aa23.87■■□□□ 1.41
VPS11-205ENST00000534551 FHAD1B1AJZ9 1412 aa23.86■■□□□ 1.41
VPS11-205ENST00000534551 CLASP1Q7Z460 1538 aa23.85■■□□□ 1.41
VPS11-205ENST00000534551 CEP170Q5SW79 1584 aa23.84■■□□□ 1.41
VPS11-205ENST00000534551 CHMP7Q8WUX9 453 aaPredicted RBP23.84■■□□□ 1.41
VPS11-205ENST00000534551 IGF1RP08069 1367 aa23.81■■□□□ 1.4
VPS11-205ENST00000534551 CHIC1Q5VXU3 224 aa23.78■■□□□ 1.4
VPS11-205ENST00000534551 RIMBP3CA6NJZ7 1639 aa23.74■■□□□ 1.39
VPS11-205ENST00000534551 RIMBP3BA6NNM3 1639 aa23.74■■□□□ 1.39
VPS11-205ENST00000534551 RIMBP3Q9UFD9 1639 aa23.74■■□□□ 1.39
VPS11-205ENST00000534551 NUP160Q12769 1436 aa23.74■■□□□ 1.39
VPS11-205ENST00000534551 ARHGEF11O15085 1522 aa23.69■■□□□ 1.38
VPS11-205ENST00000534551 CARMIL1Q5VZK9 1371 aa23.68■■□□□ 1.38
VPS11-205ENST00000534551 SHROOM2Q13796 1616 aa23.62■■□□□ 1.37
VPS11-205ENST00000534551 ERCC6L2Q5T890 1561 aa23.61■■□□□ 1.37
VPS11-205ENST00000534551 RAPGEF2Q9Y4G8 1499 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms