RNA–Protein interactions for RNA: ENST00000533979.5

ATM-223, Transcript of ATM serine/threonine kinase, humanhuman

TSL 3

Gene ATM, Length 705 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATM-223ENST00000533979 AEBP2Q6ZN18 517 aaPredicted RBP26.33■■□□□ 1.81
ATM-223ENST00000533979 CHIC1Q5VXU3 224 aa25.53■■□□□ 1.68
ATM-223ENST00000533979 PHF23Q9BUL5 403 aaPredicted RBP22.42■■□□□ 1.18
ATM-223ENST00000533979 SENP3Q9H4L4 574 aaPredicted RBP22.42■■□□□ 1.18
ATM-223ENST00000533979 FOXD1Q16676 465 aa20.83■□□□□ 0.93
ATM-223ENST00000533979 PLPPR3Q6T4P5 718 aa20.64■□□□□ 0.89
ATM-223ENST00000533979 PPP6R1Q9UPN7 881 aa19.86■□□□□ 0.77
ATM-223ENST00000533979 ADRA2BP18089 450 aa19.81■□□□□ 0.76
ATM-223ENST00000533979 PIAS4Q8N2W9 510 aaPredicted RBP19.54■□□□□ 0.72
ATM-223ENST00000533979 MSH5O43196 834 aa19.33■□□□□ 0.68
ATM-223ENST00000533979 SCAF1Q9H7N4 1312 aaKnown RBP18.23■□□□□ 0.51
ATM-223ENST00000533979 PPP4R3CPQ6ZMV5 832 aa18.15■□□□□ 0.5
ATM-223ENST00000533979 MAPK8IP2Q13387 824 aaPredicted RBP18.06■□□□□ 0.48
ATM-223ENST00000533979 POTEDQ86YR6 584 aa17.98■□□□□ 0.47
ATM-223ENST00000533979 DMRT2Q9Y5R5 561 aa17.86■□□□□ 0.45
ATM-223ENST00000533979 CNKSR2Q8WXI2 1034 aa17.72■□□□□ 0.43
ATM-223ENST00000533979 NCBP3Q53F19 620 aaKnown RBP17.65■□□□□ 0.42
ATM-223ENST00000533979 RNF216Q9NWF9 866 aaPredicted RBP17.44■□□□□ 0.38
ATM-223ENST00000533979 HOXD11P31277 338 aaPredicted RBP17.43■□□□□ 0.38
ATM-223ENST00000533979 KCNA4P22459 653 aa17.4■□□□□ 0.38
ATM-223ENST00000533979 NPM3O75607 178 aaKnown RBP17.31■□□□□ 0.36
ATM-223ENST00000533979 DCAF8L1A6NGE4 600 aa17.04■□□□□ 0.32
ATM-223ENST00000533979 DNAJC5BQ9UF47 199 aa16.97■□□□□ 0.31
ATM-223ENST00000533979 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.58■□□□□ 0.24
ATM-223ENST00000533979 SLC4A1APQ9BWU0 796 aaKnown RBP16.54■□□□□ 0.24
ATM-223ENST00000533979 RNF39Q9H2S5 420 aa16.53■□□□□ 0.24
ATM-223ENST00000533979 SLC4A2P04920 1241 aa16.42■□□□□ 0.22
ATM-223ENST00000533979 C1QBPQ07021 282 aaKnown RBP16.36■□□□□ 0.21
ATM-223ENST00000533979 CACNB1Q02641 598 aaPredicted RBP16.27■□□□□ 0.2
ATM-223ENST00000533979 U3KPZ7 1027 aaPredicted RBP16.24■□□□□ 0.19
ATM-223ENST00000533979 FOXD4L1Q9NU39 408 aa16.11■□□□□ 0.17
ATM-223ENST00000533979 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.05■□□□□ 0.16
ATM-223ENST00000533979 HNRNPUL2Q1KMD3 747 aaKnown RBP16.05■□□□□ 0.16
ATM-223ENST00000533979 MYCNP04198 464 aaPredicted RBP16.01■□□□□ 0.15
ATM-223ENST00000533979 ZBTB22O15209 634 aa15.98■□□□□ 0.15
ATM-223ENST00000533979 SAMD1Q6SPF0 538 aaPredicted RBP15.95■□□□□ 0.14
ATM-223ENST00000533979 APLP2Q06481 763 aa15.93■□□□□ 0.14
ATM-223ENST00000533979 SPINK5Q9NQ38 1064 aaPredicted RBP15.86■□□□□ 0.13
ATM-223ENST00000533979 CAPN15O75808 1086 aa15.82■□□□□ 0.12
ATM-223ENST00000533979 CSRNP3Q8WYN3 585 aa15.76■□□□□ 0.11
ATM-223ENST00000533979 EHMT2Q96KQ7 1210 aa15.71■□□□□ 0.11
ATM-223ENST00000533979 ZNF219Q9P2Y4 722 aaPredicted RBP15.71■□□□□ 0.11
ATM-223ENST00000533979 TRHP20396 242 aaPredicted RBP15.68■□□□□ 0.1
ATM-223ENST00000533979 ATXN8OSP0DMR3 200 aa15.65■□□□□ 0.1
ATM-223ENST00000533979 DSG3P32926 999 aa15.64■□□□□ 0.09
ATM-223ENST00000533979 ATF5Q9Y2D1 282 aaPredicted RBP15.58■□□□□ 0.08
ATM-223ENST00000533979 ABCB7O75027 752 aa15.44■□□□□ 0.06
ATM-223ENST00000533979 POLA2Q14181 598 aa15.42■□□□□ 0.06
ATM-223ENST00000533979 ZBTB12Q9Y330 459 aaPredicted RBP15.15■□□□□ 0.02
ATM-223ENST00000533979 FBLN2P98095 1184 aa14.98□□□□□ -0.01
ATM-223ENST00000533979 RBM42Q9BTD8 480 aaKnown RBP14.93□□□□□ -0.02
ATM-223ENST00000533979 MKRN4PQ13434 485 aaPredicted RBP14.89□□□□□ -0.03
ATM-223ENST00000533979 OSCARQ8IYS5 282 aa14.8□□□□□ -0.04
ATM-223ENST00000533979 SPDYE2BA6NHP3 402 aa14.73□□□□□ -0.05
ATM-223ENST00000533979 SPDYE6P0CI01 402 aa14.73□□□□□ -0.05
ATM-223ENST00000533979 SPDYE2Q495Y8 402 aa14.73□□□□□ -0.05
ATM-223ENST00000533979 AKT1S1Q96B36 256 aa14.71□□□□□ -0.05
ATM-223ENST00000533979 ZNF692Q9BU19 519 aaPredicted RBP14.63□□□□□ -0.07
ATM-223ENST00000533979 SSUH2Q9Y2M2 353 aa14.56□□□□□ -0.08
ATM-223ENST00000533979 REM2Q8IYK8 340 aaPredicted RBP14.54□□□□□ -0.08
ATM-223ENST00000533979 SPDYE4A6NLX3 237 aa14.46□□□□□ -0.09
ATM-223ENST00000533979 PABPN1Q86U42 306 aaKnown RBP eCLIP14.4□□□□□ -0.1
ATM-223ENST00000533979 CHRDL2Q6WN34 429 aa14.37□□□□□ -0.11
ATM-223ENST00000533979 SPDYE1Q8NFV5 336 aaPredicted RBP14.34□□□□□ -0.11
ATM-223ENST00000533979 PITPNM1O00562 1244 aa14.32□□□□□ -0.12
ATM-223ENST00000533979 CLEC11AQ9Y240 323 aa14.25□□□□□ -0.13
ATM-223ENST00000533979 PROM2Q8N271 834 aa14.22□□□□□ -0.13
ATM-223ENST00000533979 FKBP8Q14318 412 aa14.21□□□□□ -0.13
ATM-223ENST00000533979 POTEHQ6S545 545 aa14.2□□□□□ -0.14
ATM-223ENST00000533979 STAG3Q9UJ98 1225 aa14.2□□□□□ -0.14
ATM-223ENST00000533979 FXR2P51116 673 aaKnown RBP eCLIP14.18□□□□□ -0.14
ATM-223ENST00000533979 PRR29P0C7W0 189 aa14.14□□□□□ -0.15
ATM-223ENST00000533979 PIP4P2Q8N4L2 257 aa14.13□□□□□ -0.15
ATM-223ENST00000533979 PRKAR2AP13861 404 aaKnown RBP13.99□□□□□ -0.17
ATM-223ENST00000533979 CHADLQ6NUI6 762 aa13.91□□□□□ -0.18
ATM-223ENST00000533979 CREBZFQ9NS37 354 aa13.87□□□□□ -0.19
ATM-223ENST00000533979 FBXO3Q9UK99 471 aa13.87□□□□□ -0.19
ATM-223ENST00000533979 FARP1Q9Y4F1 1045 aaPredicted RBP13.81□□□□□ -0.2
ATM-223ENST00000533979 MIER1Q8N108 512 aa13.78□□□□□ -0.2
ATM-223ENST00000533979 HAX1O00165 279 aa13.77□□□□□ -0.21
ATM-223ENST00000533979 PLEKHG5O94827 1062 aa13.73□□□□□ -0.21
ATM-223ENST00000533979 MNX1P50219 401 aaPredicted RBP13.71□□□□□ -0.21
ATM-223ENST00000533979 PLCD3Q8N3E9 789 aa13.7□□□□□ -0.22
ATM-223ENST00000533979 C19orf67A6NJJ6 358 aa13.69□□□□□ -0.22
ATM-223ENST00000533979 NPM1P06748 294 aaKnown RBP eCLIP13.69□□□□□ -0.22
ATM-223ENST00000533979 EVX2Q03828 476 aa13.62□□□□□ -0.23
ATM-223ENST00000533979 ZBTB47Q9UFB7 747 aaPredicted RBP13.61□□□□□ -0.23
ATM-223ENST00000533979 VASPP50552 380 aaPredicted RBP13.6□□□□□ -0.23
ATM-223ENST00000533979 CD44P16070 742 aaKnown RBP13.56□□□□□ -0.24
ATM-223ENST00000533979 SP7Q8TDD2 431 aaPredicted RBP13.54□□□□□ -0.24
ATM-223ENST00000533979 PAK3O75914 559 aaPredicted RBP13.48□□□□□ -0.25
ATM-223ENST00000533979 KLHL34Q8N239 644 aa13.46□□□□□ -0.25
ATM-223ENST00000533979 ZRANB1Q9UGI0 708 aa13.46□□□□□ -0.25
ATM-223ENST00000533979 CLCN6P51797 869 aa13.45□□□□□ -0.26
ATM-223ENST00000533979 NUBP1P53384 320 aa13.44□□□□□ -0.26
ATM-223ENST00000533979 IFNLR1Q8IU57 520 aaPredicted RBP13.44□□□□□ -0.26
ATM-223ENST00000533979 RASEFQ8IZ41 740 aa13.39□□□□□ -0.27
ATM-223ENST00000533979 ZNF579Q8NAF0 562 aaKnown RBP13.39□□□□□ -0.27
ATM-223ENST00000533979 TSPYL2Q9H2G4 693 aaPredicted RBP13.38□□□□□ -0.27
ATM-223ENST00000533979 GABBR2O75899 941 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms