RNA–Protein interactions for RNA: ENST00000533873.1

ACER3-213, Transcript of alkaline ceramidase 3, human

TSL 2 BASIC

Gene ACER3, Length 929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ACER3-213	ENST00000533873	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	7.28	□□□□□ -1.24	2e-29	■■■■■ 310.5
ACER3-213	ENST00000533873	SF3B1	O75533	1304 aa	Known RBP eCLIP	7.54	□□□□□ -1.2	3e-6	■■■■■ 110.9
ACER3-213	ENST00000533873	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	7.27	□□□□□ -1.25	6e-28	■■■■■ 106.4
ACER3-213	ENST00000533873	DDX3X	O00571	662 aa	Known RBP eCLIP	7.01	□□□□□ -1.29	3e-17	■■■■■ 71.6
ACER3-213	ENST00000533873	WDR43	Q15061	677 aa	Known RBP eCLIP	9.09	□□□□□ -0.95	7e-25	■■■■■ 56.8
ACER3-213	ENST00000533873	EFTUD2	Q15029	972 aa	Known RBP eCLIP	6.49	□□□□□ -1.37	4e-8	■■■■■ 42.6
ACER3-213	ENST00000533873	NOLC1	Q14978	699 aa	Known RBP eCLIP	7.54	□□□□□ -1.2	2e-7	■■■■■ 40.8
ACER3-213	ENST00000533873	AQR	O60306	1485 aa	Known RBP eCLIP	12.02	□□□□□ -0.48	2e-12	■■■■■ 32.2
ACER3-213	ENST00000533873	LSM11	P83369	360 aa	Known RBP eCLIP	9.2	□□□□□ -0.94	1e-6	■■■■■ 28.9
ACER3-213	ENST00000533873	SF3B4	Q15427	424 aa	Known RBP eCLIP	6.32	□□□□□ -1.4	2e-6	■■■■■ 28.8
ACER3-213	ENST00000533873	HNRNPM	P52272	730 aa	Known RBP eCLIP	10.76	□□□□□ -0.69	1e-6	■■■■■ 27.5
ACER3-213	ENST00000533873	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	5.42	□□□□□ -1.54	1e-7	■■■■■ 26.9
ACER3-213	ENST00000533873	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	8.12	□□□□□ -1.11	3e-9	■■■■□ 23.2
ACER3-213	ENST00000533873	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	10.49	□□□□□ -0.73	6e-7	■■■□□ 19.2
ACER3-213	ENST00000533873	KHSRP	Q92945	711 aa	Known RBP eCLIP	9.47	□□□□□ -0.89	8e-6	■■■□□ 18.5
ACER3-213	ENST00000533873	U2AF2	P26368	475 aa	Known RBP eCLIP	7.65	□□□□□ -1.18	3e-6	■■■□□ 15.4
ACER3-213	ENST00000533873	TROVE2	P10155	538 aa	Known RBP eCLIP	6.34	□□□□□ -1.39	1e-6	■□□□□ 8.4

Retrieved 17 of 17 RNA–protein pairs in 6 ms