RNA–Protein interactions for RNA: ENST00000533683.6

SAMD1-202, Transcript of sterile alpha motif domain containing 1, humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene SAMD1, Length 2,164 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMD1-202ENST00000533683 UTP3Q9NQZ2 479 aaKnown RBP eCLIP30.81■■■□□ 2.523e-7■■■■■ 94.6
SAMD1-202ENST00000533683 SERBP1Q8NC51 408 aaKnown RBP eCLIP29.03■■■□□ 2.243e-6■■■■■ 73.5
SAMD1-202ENST00000533683 FXR2P51116 673 aaKnown RBP eCLIP32.06■■■□□ 2.723e-9■■■■■ 61.8
SAMD1-202ENST00000533683 PRPF4O43172 522 aaKnown RBP eCLIP29.39■■■□□ 2.294e-12■■■■■ 40.2
SAMD1-202ENST00000533683 PTBP1P26599 531 aaKnown RBP eCLIP25.62■■□□□ 1.695e-9■■■■■ 34.9
SAMD1-202ENST00000533683 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP28.64■■■□□ 2.184e-10■■■■■ 33.9
SAMD1-202ENST00000533683 LIN28BQ6ZN17 250 aaKnown RBP eCLIP28.96■■■□□ 2.236e-11■■■■■ 31.2
SAMD1-202ENST00000533683 RBFOX2O43251 390 aaKnown RBP eCLIP23.45■■□□□ 1.353e-7■■■■■ 29.5
SAMD1-202ENST00000533683 PCBP1Q15365 356 aaKnown RBP eCLIP30.07■■■□□ 2.44e-18■■■■■ 29.4
SAMD1-202ENST00000533683 PCBP2Q15366 365 aaKnown RBP eCLIP28.06■■■□□ 2.081e-11■■■■■ 27.5
SAMD1-202ENST00000533683 DDX3XO00571 662 aaKnown RBP eCLIP30.92■■■□□ 2.542e-10■■■■■ 27.3
SAMD1-202ENST00000533683 G3BP1Q13283 466 aaKnown RBP eCLIP34.76■■■■□ 3.165e-9■■■■□ 24.7
SAMD1-202ENST00000533683 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP29.66■■■□□ 2.348e-6■■■■□ 23.2
SAMD1-202ENST00000533683 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP31.78■■■□□ 2.684e-10■■■■□ 20.8
SAMD1-202ENST00000533683 EFTUD2Q15029 972 aaKnown RBP eCLIP29.47■■■□□ 2.311e-8■■■□□ 18.3
SAMD1-202ENST00000533683 FTOQ9C0B1 505 aaKnown RBP eCLIP33.25■■■□□ 2.912e-7■■■□□ 18.1
SAMD1-202ENST00000533683 WRNQ14191 1432 aaPredicted RBP eCLIP45.88■■■■■ 4.934e-8■■■□□ 18.1
SAMD1-202ENST00000533683 PPIGQ13427 754 aaKnown RBP eCLIP28.31■■■□□ 2.123e-25■■■□□ 18
SAMD1-202ENST00000533683 GRWD1Q9BQ67 446 aaKnown RBP eCLIP40.01■■■■■ 41e-6■■■□□ 17.6
SAMD1-202ENST00000533683 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP35.44■■■■□ 3.268e-12■■■□□ 17.5
SAMD1-202ENST00000533683 FMR1Q06787 632 aaKnown RBP eCLIP32.3■■■□□ 2.764e-8■■■□□ 17
SAMD1-202ENST00000533683 SDAD1Q9NVU7 687 aaKnown RBP eCLIP28.55■■■□□ 2.162e-11■■■□□ 15.4
SAMD1-202ENST00000533683 PUM1Q14671 1186 aaKnown RBP eCLIP26.9■■□□□ 1.93e-7■■■□□ 14.6
SAMD1-202ENST00000533683 PABPC4Q13310 644 aaKnown RBP eCLIP31.62■■■□□ 2.653e-8■■□□□ 13.5
SAMD1-202ENST00000533683 BUD13Q9BRD0 619 aaKnown RBP eCLIP30.59■■■□□ 2.492e-11■■□□□ 13.3
SAMD1-202ENST00000533683 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP32.73■■■□□ 2.831e-7■■□□□ 12.9
SAMD1-202ENST00000533683 ZNF622Q969S3 477 aaKnown RBP eCLIP32.7■■■□□ 2.835e-8■■□□□ 12.8
SAMD1-202ENST00000533683 DDX6P26196 483 aaKnown RBP eCLIP28.23■■■□□ 2.114e-12■■□□□ 12.4
SAMD1-202ENST00000533683 LARP7Q4G0J3 582 aaKnown RBP eCLIP27.23■■□□□ 1.951e-7■■□□□ 12.2
SAMD1-202ENST00000533683 ZNF800Q2TB10 664 aaPredicted RBP eCLIP25.87■■□□□ 1.736e-12■■□□□ 12.1
SAMD1-202ENST00000533683 SRSF7Q16629 238 aaKnown RBP eCLIP24.25■■□□□ 1.471e-11■■□□□ 12
SAMD1-202ENST00000533683 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP40.75■■■■■ 4.111e-7■■□□□ 11.8
SAMD1-202ENST00000533683 DDX55Q8NHQ9 600 aaKnown RBP eCLIP31.29■■■□□ 2.69e-7■□□□□ 11.1
SAMD1-202ENST00000533683 TRA2AQ13595 282 aaKnown RBP eCLIP25.74■■□□□ 1.712e-7■□□□□ 11
SAMD1-202ENST00000533683 NIPBLQ6KC79 2804 aaeCLIP20.87■□□□□ 0.936e-7■□□□□ 10.3
SAMD1-202ENST00000533683 PUM2Q8TB72 1066 aaKnown RBP eCLIP27.36■■□□□ 1.979e-8■□□□□ 10.2
SAMD1-202ENST00000533683 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP42.22■■■■■ 4.351e-7■□□□□ 10.1
SAMD1-202ENST00000533683 CPSF6Q16630 551 aaKnown RBP eCLIP27.79■■■□□ 2.042e-6■□□□□ 10.1
SAMD1-202ENST00000533683 TIA1P31483 386 aaKnown RBP eCLIP27.41■■□□□ 1.988e-13■□□□□ 10
SAMD1-202ENST00000533683 AGGF1Q8N302 714 aaeCLIP29.46■■■□□ 2.313e-16■□□□□ 9.8
SAMD1-202ENST00000533683 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP28.58■■■□□ 2.177e-7■□□□□ 9.3
SAMD1-202ENST00000533683 ABCF1Q8NE71 845 aaKnown RBP eCLIP37.83■■■■□ 3.658e-8■□□□□ 9.1
SAMD1-202ENST00000533683 YBX3P16989 372 aaKnown RBP eCLIP31.04■■■□□ 2.562e-6■□□□□ 8.6
SAMD1-202ENST00000533683 NKRFO15226 690 aaKnown RBP eCLIP31.66■■■□□ 2.666e-7■□□□□ 8.1
Retrieved 44 of 44 RNA–protein pairs in 8.5 ms