RNA–Protein interactions for RNA: ENST00000529539.5

CHID1-216, Transcript of chitinase domain containing 1, humanhuman

TSL 2

Gene CHID1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHID1-216ENST00000529539 UPF1Q92900 1129 aaKnown RBP eCLIP30.63■■■□□ 2.492e-15■■■■■ 66.8
CHID1-216ENST00000529539 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.51■■□□□ 1.193e-11■■■■■ 236
CHID1-216ENST00000529539 DDX59Q5T1V6 619 aaKnown RBP eCLIP19.11■□□□□ 0.653e-11■■□□□ 11.4
CHID1-216ENST00000529539 AKAP1Q92667 903 aaKnown RBP eCLIP18.82■□□□□ 0.63e-9■■■■■ 39.5
CHID1-216ENST00000529539 SND1Q7KZF4 910 aaKnown RBP eCLIP21.98■■□□□ 1.113e-8■■□□□ 12.3
CHID1-216ENST00000529539 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.48■■□□□ 1.675e-8■■■□□ 18
CHID1-216ENST00000529539 SF3B4Q15427 424 aaKnown RBP eCLIP19.51■□□□□ 0.716e-8■■■■□ 19.5
CHID1-216ENST00000529539 RBFOX2O43251 390 aaKnown RBP eCLIP16.33■□□□□ 0.27e-8■□□□□ 11
CHID1-216ENST00000529539 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP20.04■□□□□ 0.88e-8■■■□□ 16.3
CHID1-216ENST00000529539 EFTUD2Q15029 972 aaKnown RBP eCLIP19.94■□□□□ 0.789e-8■□□□□ 9.2
CHID1-216ENST00000529539 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.02■□□□□ 0.81e-7■■■■■ 69.6
CHID1-216ENST00000529539 CDC40O60508 579 aaKnown RBP eCLIP19.67■□□□□ 0.742e-7■■■■■ 37
CHID1-216ENST00000529539 PABPC4Q13310 644 aaKnown RBP eCLIP25.84■■□□□ 1.732e-7■■■■□ 25.4
CHID1-216ENST00000529539 PCBP2Q15366 365 aaKnown RBP eCLIP19.89■□□□□ 0.774e-7■■■■■ 44.6
CHID1-216ENST00000529539 GTF2F1P35269 517 aaKnown RBP eCLIP23.71■■□□□ 1.395e-7■■□□□ 14.5
CHID1-216ENST00000529539 RBM22Q9NW64 420 aaKnown RBP eCLIP21.32■■□□□ 16e-7■□□□□ 8.2
CHID1-216ENST00000529539 NONOQ15233 471 aaKnown RBP eCLIP24.09■■□□□ 1.457e-7■■■□□ 17.2
CHID1-216ENST00000529539 ILF3Q12906 894 aaKnown RBP eCLIP21.25■□□□□ 0.997e-7■■■■□ 23.2
CHID1-216ENST00000529539 EWSR1Q01844 656 aaKnown RBP eCLIP15.62■□□□□ 0.099e-7■■■□□ 16.8
CHID1-216ENST00000529539 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.53■□□□□ 0.49e-7■■■□□ 16.4
CHID1-216ENST00000529539 LSM11P83369 360 aaKnown RBP eCLIP18.39■□□□□ 0.531e-6■■■□□ 18.7
CHID1-216ENST00000529539 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.26■■□□□ 1.312e-6■□□□□ 10.3
CHID1-216ENST00000529539 LARP4Q71RC2 724 aaKnown RBP eCLIP19.42■□□□□ 0.72e-6■■■□□ 16
CHID1-216ENST00000529539 NIPBLQ6KC79 2804 aaeCLIP18.92■□□□□ 0.622e-6■□□□□ 11.3
CHID1-216ENST00000529539 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.63■□□□□ 0.733e-6■■■■■ 50.8
CHID1-216ENST00000529539 GRSF1Q12849 480 aaKnown RBP eCLIP22.63■■□□□ 1.213e-6■■■■□ 22.4
CHID1-216ENST00000529539 PRPF4O43172 522 aaKnown RBP eCLIP20.34■□□□□ 0.854e-6■■■□□ 18.4
CHID1-216ENST00000529539 TARDBPQ13148 414 aaKnown RBP eCLIP21.45■■□□□ 1.024e-6■■■■□ 20.5
CHID1-216ENST00000529539 PPIGQ13427 754 aaKnown RBP eCLIP24.72■■□□□ 1.559e-6■■□□□ 12.8
Retrieved 29 of 29 RNA–protein pairs in 18.6 ms