RNA–Protein interactions for RNA: ENST00000527739.5

CAPN1-211, Transcript of calpain 1, humanhuman

TSL 4

Gene CAPN1, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-211ENST00000527739 NISCHQ9Y2I1 1504 aa47.23■■■■■ 5.15
CAPN1-211ENST00000527739 ABCC9O60706 1549 aa42.63■■■■■ 4.42
CAPN1-211ENST00000527739 CCDC180Q9P1Z9 1646 aa42.37■■■■■ 4.37
CAPN1-211ENST00000527739 RB1CC1Q8TDY2 1594 aa40.42■■■■■ 4.06
CAPN1-211ENST00000527739 DNAJC5BQ9UF47 199 aa40.2■■■■■ 4.03
CAPN1-211ENST00000527739 NACADO15069 1562 aa40.1■■■■■ 4.01
CAPN1-211ENST00000527739 DCAF8L2P0C7V8 631 aa40.07■■■■■ 4.01
CAPN1-211ENST00000527739 PABPN1Q86U42 306 aaKnown RBP eCLIP39.7■■■■□ 3.95
CAPN1-211ENST00000527739 UNC13AQ9UPW8 1703 aa39.57■■■■□ 3.93
CAPN1-211ENST00000527739 MYO15BQ96JP2 1530 aa39.46■■■■□ 3.91
CAPN1-211ENST00000527739 BICRAQ9NZM4 1560 aa39.34■■■■□ 3.89
CAPN1-211ENST00000527739 ZCCHC6Q5VYS8 1495 aaKnown RBP39.19■■■■□ 3.86
CAPN1-211ENST00000527739 DCAF1Q9Y4B6 1507 aa38.94■■■■□ 3.82
CAPN1-211ENST00000527739 SCRIBQ14160 1630 aa38.69■■■■□ 3.78
CAPN1-211ENST00000527739 SHROOM4Q9ULL8 1493 aa38.64■■■■□ 3.78
CAPN1-211ENST00000527739 CC2D2AQ9P2K1 1620 aa38.48■■■■□ 3.75
CAPN1-211ENST00000527739 CECR2Q9BXF3 1484 aa38.38■■■■□ 3.73
CAPN1-211ENST00000527739 EIF4G1Q04637 1599 aaKnown RBP38.35■■■■□ 3.73
CAPN1-211ENST00000527739 NCAPD3P42695 1498 aa37.05■■■■□ 3.52
CAPN1-211ENST00000527739 ATAD2BQ9ULI0 1458 aa36.94■■■■□ 3.5
CAPN1-211ENST00000527739 DNAJC5Q9H3Z4 198 aa36.91■■■■□ 3.5
CAPN1-211ENST00000527739 SMARCA4P51532 1647 aa36.86■■■■□ 3.49
CAPN1-211ENST00000527739 SMARCA2P51531 1590 aa36.77■■■■□ 3.48
CAPN1-211ENST00000527739 ERCC6Q03468 1493 aa36.75■■■■□ 3.47
CAPN1-211ENST00000527739 HMGXB3Q12766 1538 aa36.75■■■■□ 3.47
CAPN1-211ENST00000527739 CUX2O14529 1486 aa36.71■■■■□ 3.47
CAPN1-211ENST00000527739 BAZ1AQ9NRL2 1556 aaPredicted RBP36.63■■■■□ 3.45
CAPN1-211ENST00000527739 NESP48681 1621 aa36.61■■■■□ 3.45
CAPN1-211ENST00000527739 BAZ1BQ9UIG0 1483 aaKnown RBP36.56■■■■□ 3.44
CAPN1-211ENST00000527739 PEG3Q9GZU2 1588 aa36.47■■■■□ 3.43
CAPN1-211ENST00000527739 MROH2BQ7Z745 1585 aa36.43■■■■□ 3.42
CAPN1-211ENST00000527739 THOC2Q8NI27 1593 aaKnown RBP36.22■■■■□ 3.39
CAPN1-211ENST00000527739 LAMC3Q9Y6N6 1575 aa36.21■■■■□ 3.39
CAPN1-211ENST00000527739 KIF21AQ7Z4S6 1674 aa36.1■■■■□ 3.37
CAPN1-211ENST00000527739 PDS5BQ9NTI5 1447 aa36■■■■□ 3.35
CAPN1-211ENST00000527739 WIZO95785 1651 aa35.97■■■■□ 3.35
CAPN1-211ENST00000527739 CADPSQ9ULU8 1353 aa35.92■■■■□ 3.34
CAPN1-211ENST00000527739 RSF1Q96T23 1441 aaPredicted RBP35.87■■■■□ 3.33
CAPN1-211ENST00000527739 MRC2Q9UBG0 1479 aa35.74■■■■□ 3.31
CAPN1-211ENST00000527739 WDR62O43379 1518 aa35.66■■■■□ 3.3
CAPN1-211ENST00000527739 CEP164Q9UPV0 1460 aa35.55■■■■□ 3.28
CAPN1-211ENST00000527739 TOP2AP11388 1531 aaKnown RBP35.54■■■■□ 3.28
CAPN1-211ENST00000527739 FANCD2Q9BXW9 1451 aa35.53■■■■□ 3.28
CAPN1-211ENST00000527739 CFTRP13569 1480 aa35.48■■■■□ 3.27
CAPN1-211ENST00000527739 URB2Q14146 1524 aaKnown RBP35.29■■■■□ 3.24
CAPN1-211ENST00000527739 TRIM41Q8WV44 630 aa35.29■■■■□ 3.24
CAPN1-211ENST00000527739 CCDC88BA6NC98 1476 aa35.22■■■■□ 3.23
CAPN1-211ENST00000527739 PRDM2Q13029 1718 aa35.08■■■■□ 3.21
CAPN1-211ENST00000527739 OSCARQ8IYS5 282 aa35.03■■■■□ 3.2
CAPN1-211ENST00000527739 ZNF608Q9ULD9 1512 aaPredicted RBP34.9■■■■□ 3.18
CAPN1-211ENST00000527739 SUPT5HO00267 1087 aaKnown RBP34.86■■■■□ 3.17
CAPN1-211ENST00000527739 TOPBP1Q92547 1522 aa34.85■■■■□ 3.17
CAPN1-211ENST00000527739 IFT140Q96RY7 1462 aa34.84■■■■□ 3.17
CAPN1-211ENST00000527739 DNMBPQ6XZF7 1577 aa34.69■■■■□ 3.14
CAPN1-211ENST00000527739 ABCC8Q09428 1581 aa34.66■■■■□ 3.14
CAPN1-211ENST00000527739 EIF4G3O43432 1585 aaKnown RBP34.65■■■■□ 3.14
CAPN1-211ENST00000527739 RIMBP3CA6NJZ7 1639 aa34.64■■■■□ 3.14
CAPN1-211ENST00000527739 RIMBP3BA6NNM3 1639 aa34.64■■■■□ 3.14
CAPN1-211ENST00000527739 RIMBP3Q9UFD9 1639 aa34.64■■■■□ 3.14
CAPN1-211ENST00000527739 TARBP1Q13395 1621 aaKnown RBP34.56■■■■□ 3.12
CAPN1-211ENST00000527739 AQRO60306 1485 aaKnown RBP eCLIP34.55■■■■□ 3.124e-7■■■■□ 19.3
CAPN1-211ENST00000527739 ARHGEF11O15085 1522 aa34.5■■■■□ 3.11
CAPN1-211ENST00000527739 POLA1P09884 1462 aaPredicted RBP34.49■■■■□ 3.11
CAPN1-211ENST00000527739 CHD1O14646 1710 aa34.42■■■■□ 3.1
CAPN1-211ENST00000527739 RAD54L2Q9Y4B4 1467 aa34.41■■■■□ 3.1
CAPN1-211ENST00000527739 FBLN2P98095 1184 aa34.32■■■■□ 3.08
CAPN1-211ENST00000527739 TDRD9Q8NDG6 1382 aaKnown RBP34.31■■■■□ 3.08
CAPN1-211ENST00000527739 SOGA1O94964 1423 aa34.3■■■■□ 3.08
CAPN1-211ENST00000527739 CYB5RLQ6IPT4 315 aa34.27■■■■□ 3.08
CAPN1-211ENST00000527739 FGD5Q6ZNL6 1462 aa34.26■■■■□ 3.07
CAPN1-211ENST00000527739 CUX1P39880 1505 aa34.22■■■■□ 3.07
CAPN1-211ENST00000527739 ARAP1Q96P48 1450 aa34.18■■■■□ 3.06
CAPN1-211ENST00000527739 SNAPC4Q5SXM2 1469 aa34.16■■■■□ 3.06
CAPN1-211ENST00000527739 WDR97A6NE52 1622 aa34.09■■■■□ 3.05
CAPN1-211ENST00000527739 CLASP1Q7Z460 1538 aa34.02■■■■□ 3.04
CAPN1-211ENST00000527739 CHMP7Q8WUX9 453 aaPredicted RBP34.01■■■■□ 3.03
CAPN1-211ENST00000527739 GRIN2BQ13224 1484 aa34.01■■■■□ 3.03
CAPN1-211ENST00000527739 MAGI1Q96QZ7 1491 aaPredicted RBP34.01■■■■□ 3.03
CAPN1-211ENST00000527739 SYNJ1O43426 1573 aa33.94■■■■□ 3.02
CAPN1-211ENST00000527739 TRHP20396 242 aaPredicted RBP33.92■■■■□ 3.02
CAPN1-211ENST00000527739 SYNJ2O15056 1496 aa33.92■■■■□ 3.02
CAPN1-211ENST00000527739 PBRM1Q86U86 1689 aa33.89■■■■□ 3.02
CAPN1-211ENST00000527739 GAPVD1Q14C86 1478 aa33.88■■■■□ 3.01
CAPN1-211ENST00000527739 WRNQ14191 1432 aaPredicted RBP eCLIP33.86■■■■□ 3.01
CAPN1-211ENST00000527739 ABCA10Q8WWZ4 1543 aa33.83■■■■□ 3.01
CAPN1-211ENST00000527739 ABCA5Q8WWZ7 1642 aa33.81■■■■□ 3
CAPN1-211ENST00000527739 TOP2BQ02880 1626 aa33.71■■■□□ 2.99
CAPN1-211ENST00000527739 BIVM-ERCC5R4GMW8 1640 aa33.65■■■□□ 2.98
CAPN1-211ENST00000527739 GRIN2AQ12879 1464 aa33.59■■■□□ 2.97
CAPN1-211ENST00000527739 ADAMTS12P58397 1594 aa33.56■■■□□ 2.96
CAPN1-211ENST00000527739 ERCC6L2Q5T890 1561 aa33.55■■■□□ 2.96
CAPN1-211ENST00000527739 CEP170Q5SW79 1584 aa33.51■■■□□ 2.96
CAPN1-211ENST00000527739 NUP160Q12769 1436 aa33.49■■■□□ 2.95
CAPN1-211ENST00000527739 FHAD1B1AJZ9 1412 aa33.44■■■□□ 2.94
CAPN1-211ENST00000527739 ERICH3Q5RHP9 1530 aa33.38■■■□□ 2.93
CAPN1-211ENST00000527739 SHROOM2Q13796 1616 aa33.35■■■□□ 2.93
CAPN1-211ENST00000527739 KIF27Q86VH2 1401 aa33.2■■■□□ 2.91
CAPN1-211ENST00000527739 PRG4Q92954 1404 aaPredicted RBP33.19■■■□□ 2.9
CAPN1-211ENST00000527739 IGF1RP08069 1367 aa33.14■■■□□ 2.9
CAPN1-211ENST00000527739 JPH4Q96JJ6 628 aa33.13■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms