RNA–Protein interactions for RNA: ENST00000527619.5
Retrieved 6 of 6 RNA–protein pairs in 2.9 ms
SOX6-208, Transcript of SRY-box 6, human
APPRIS ALT2 TSL 1 (best) BASIC
Gene SOX6, Length 2,699 nt, Biotype protein coding, Subcellular localisation Cytosol .
RNA | Protein | Prediction (catRAPID) | Interaction (ENCODE eCLIP) | ||||||
---|---|---|---|---|---|---|---|---|---|
Transcript Symbol | Ensembl Transcript ID | Gene | UniProt Accession | Length | Protein Status | Prediction Score | Prediction z-Score | p-Value | Fold Change |
SOX6-208 | ENST00000527619 | SF3B1 | O75533 | 1304 aa | Known RBP eCLIP | 7.73 | □□□□□ -1.17 | 1e-10 | ■■■■■ 241.2 |
SOX6-208 | ENST00000527619 | UTP3 | Q9NQZ2 | 479 aa | Known RBP eCLIP | 8.87 | □□□□□ -0.99 | 7e-8 | ■■■■■ 186.3 |
SOX6-208 | ENST00000527619 | AARS | P49588 | 968 aa | Known RBP eCLIP | 8.48 | □□□□□ -1.05 | 3e-6 | ■■■■■ 61.8 |
SOX6-208 | ENST00000527619 | ZNF622 | Q969S3 | 477 aa | Known RBP eCLIP | 9.46 | □□□□□ -0.89 | 4e-6 | ■■■■■ 36.2 |
SOX6-208 | ENST00000527619 | PTBP1 | P26599 | 531 aa | Known RBP eCLIP | 7.18 | □□□□□ -1.26 | 3e-7 | ■■■■■ 36.1 |
SOX6-208 | ENST00000527619 | PCBP2 | Q15366 | 365 aa | Known RBP eCLIP | 7.09 | □□□□□ -1.27 | 3e-6 | ■■■□□ 17.8 |