RNA–Protein interactions for RNA: ENST00000524827.5

CSTF3-206, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 3 BASIC

Gene CSTF3, Length 693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-206ENST00000524827 NISCHQ9Y2I1 1504 aa35.16■■■■□ 3.22
CSTF3-206ENST00000524827 ABCC9O60706 1549 aa31.92■■■□□ 2.7
CSTF3-206ENST00000524827 CCDC180Q9P1Z9 1646 aa31.67■■■□□ 2.66
CSTF3-206ENST00000524827 RB1CC1Q8TDY2 1594 aa30.26■■■□□ 2.43
CSTF3-206ENST00000524827 DNAJC5BQ9UF47 199 aa30.15■■■□□ 2.42
CSTF3-206ENST00000524827 NACADO15069 1562 aa29.99■■■□□ 2.39
CSTF3-206ENST00000524827 DCAF8L2P0C7V8 631 aa29.74■■■□□ 2.35
CSTF3-206ENST00000524827 PABPN1Q86U42 306 aaKnown RBP eCLIP29.66■■■□□ 2.34
CSTF3-206ENST00000524827 UNC13AQ9UPW8 1703 aa29.59■■■□□ 2.33
CSTF3-206ENST00000524827 MYO15BQ96JP2 1530 aa29.5■■■□□ 2.31
CSTF3-206ENST00000524827 BICRAQ9NZM4 1560 aa29.41■■■□□ 2.3
CSTF3-206ENST00000524827 ZCCHC6Q5VYS8 1495 aaKnown RBP29.1■■■□□ 2.25
CSTF3-206ENST00000524827 DCAF1Q9Y4B6 1507 aa29.04■■■□□ 2.24
CSTF3-206ENST00000524827 SHROOM4Q9ULL8 1493 aa28.98■■■□□ 2.23
CSTF3-206ENST00000524827 SCRIBQ14160 1630 aa28.86■■■□□ 2.21
CSTF3-206ENST00000524827 CC2D2AQ9P2K1 1620 aa28.82■■■□□ 2.2
CSTF3-206ENST00000524827 CECR2Q9BXF3 1484 aa28.78■■■□□ 2.2
CSTF3-206ENST00000524827 EIF4G1Q04637 1599 aaKnown RBP28.71■■■□□ 2.19
CSTF3-206ENST00000524827 DNAJC5Q9H3Z4 198 aa27.86■■■□□ 2.05
CSTF3-206ENST00000524827 NCAPD3P42695 1498 aa27.69■■■□□ 2.02
CSTF3-206ENST00000524827 CUX2O14529 1486 aa27.61■■■□□ 2.01
CSTF3-206ENST00000524827 ATAD2BQ9ULI0 1458 aa27.58■■■□□ 2.01
CSTF3-206ENST00000524827 ERCC6Q03468 1493 aa27.57■■■□□ 2
CSTF3-206ENST00000524827 SMARCA4P51532 1647 aa27.49■■□□□ 1.99
CSTF3-206ENST00000524827 SMARCA2P51531 1590 aa27.49■■□□□ 1.99
CSTF3-206ENST00000524827 HMGXB3Q12766 1538 aa27.48■■□□□ 1.99
CSTF3-206ENST00000524827 NESP48681 1621 aa27.35■■□□□ 1.97
CSTF3-206ENST00000524827 BAZ1AQ9NRL2 1556 aaPredicted RBP27.31■■□□□ 1.96
CSTF3-206ENST00000524827 BAZ1BQ9UIG0 1483 aaKnown RBP27.3■■□□□ 1.96
CSTF3-206ENST00000524827 PEG3Q9GZU2 1588 aa27.23■■□□□ 1.95
CSTF3-206ENST00000524827 THOC2Q8NI27 1593 aaKnown RBP27.14■■□□□ 1.94
CSTF3-206ENST00000524827 LAMC3Q9Y6N6 1575 aa27.11■■□□□ 1.93
CSTF3-206ENST00000524827 MROH2BQ7Z745 1585 aa27.1■■□□□ 1.93
CSTF3-206ENST00000524827 KIF21AQ7Z4S6 1674 aa27■■□□□ 1.91
CSTF3-206ENST00000524827 PDS5BQ9NTI5 1447 aa26.95■■□□□ 1.9
CSTF3-206ENST00000524827 CADPSQ9ULU8 1353 aa26.83■■□□□ 1.88
CSTF3-206ENST00000524827 MRC2Q9UBG0 1479 aa26.76■■□□□ 1.87
CSTF3-206ENST00000524827 WIZO95785 1651 aa26.76■■□□□ 1.87
CSTF3-206ENST00000524827 WDR62O43379 1518 aa26.7■■□□□ 1.87
CSTF3-206ENST00000524827 CEP164Q9UPV0 1460 aa26.6■■□□□ 1.85
CSTF3-206ENST00000524827 TRIM41Q8WV44 630 aa26.54■■□□□ 1.84
CSTF3-206ENST00000524827 FANCD2Q9BXW9 1451 aa26.54■■□□□ 1.84
CSTF3-206ENST00000524827 CFTRP13569 1480 aa26.49■■□□□ 1.83
CSTF3-206ENST00000524827 RSF1Q96T23 1441 aaPredicted RBP26.44■■□□□ 1.82
CSTF3-206ENST00000524827 TOP2AP11388 1531 aaKnown RBP26.41■■□□□ 1.82
CSTF3-206ENST00000524827 URB2Q14146 1524 aaKnown RBP26.35■■□□□ 1.81
CSTF3-206ENST00000524827 OSCARQ8IYS5 282 aa26.27■■□□□ 1.8
CSTF3-206ENST00000524827 PRDM2Q13029 1718 aa26.21■■□□□ 1.79
CSTF3-206ENST00000524827 CCDC88BA6NC98 1476 aa26.1■■□□□ 1.77
CSTF3-206ENST00000524827 IFT140Q96RY7 1462 aa26.07■■□□□ 1.76
CSTF3-206ENST00000524827 ZNF608Q9ULD9 1512 aaPredicted RBP26.07■■□□□ 1.76
CSTF3-206ENST00000524827 TOPBP1Q92547 1522 aa26.02■■□□□ 1.76
CSTF3-206ENST00000524827 RIMBP3CA6NJZ7 1639 aa26■■□□□ 1.75
CSTF3-206ENST00000524827 RIMBP3BA6NNM3 1639 aa26■■□□□ 1.75
CSTF3-206ENST00000524827 RIMBP3Q9UFD9 1639 aa26■■□□□ 1.75
CSTF3-206ENST00000524827 EIF4G3O43432 1585 aaKnown RBP25.92■■□□□ 1.74
CSTF3-206ENST00000524827 ABCC8Q09428 1581 aa25.91■■□□□ 1.74
CSTF3-206ENST00000524827 DNMBPQ6XZF7 1577 aa25.9■■□□□ 1.74
CSTF3-206ENST00000524827 ARHGEF11O15085 1522 aa25.9■■□□□ 1.74
CSTF3-206ENST00000524827 TARBP1Q13395 1621 aaKnown RBP25.81■■□□□ 1.72
CSTF3-206ENST00000524827 AQRO60306 1485 aaKnown RBP eCLIP25.78■■□□□ 1.72
CSTF3-206ENST00000524827 CHD1O14646 1710 aa25.77■■□□□ 1.72
CSTF3-206ENST00000524827 POLA1P09884 1462 aaPredicted RBP25.73■■□□□ 1.71
CSTF3-206ENST00000524827 CYB5RLQ6IPT4 315 aa25.68■■□□□ 1.7
CSTF3-206ENST00000524827 FBLN2P98095 1184 aa25.64■■□□□ 1.7
CSTF3-206ENST00000524827 ARAP1Q96P48 1450 aa25.64■■□□□ 1.69
CSTF3-206ENST00000524827 RAD54L2Q9Y4B4 1467 aa25.64■■□□□ 1.69
CSTF3-206ENST00000524827 SOGA1O94964 1423 aa25.59■■□□□ 1.69
CSTF3-206ENST00000524827 TDRD9Q8NDG6 1382 aaKnown RBP25.58■■□□□ 1.69
CSTF3-206ENST00000524827 FGD5Q6ZNL6 1462 aa25.54■■□□□ 1.68
CSTF3-206ENST00000524827 SNAPC4Q5SXM2 1469 aa25.53■■□□□ 1.68
CSTF3-206ENST00000524827 WDR97A6NE52 1622 aa25.52■■□□□ 1.68
CSTF3-206ENST00000524827 CUX1P39880 1505 aa25.48■■□□□ 1.67
CSTF3-206ENST00000524827 CLASP1Q7Z460 1538 aa25.47■■□□□ 1.67
CSTF3-206ENST00000524827 TRHP20396 242 aaPredicted RBP25.47■■□□□ 1.67
CSTF3-206ENST00000524827 MAGI1Q96QZ7 1491 aaPredicted RBP25.45■■□□□ 1.66
CSTF3-206ENST00000524827 SYNJ1O43426 1573 aa25.42■■□□□ 1.66
CSTF3-206ENST00000524827 GRIN2BQ13224 1484 aa25.41■■□□□ 1.66
CSTF3-206ENST00000524827 CHMP7Q8WUX9 453 aaPredicted RBP25.41■■□□□ 1.66
CSTF3-206ENST00000524827 SYNJ2O15056 1496 aa25.36■■□□□ 1.65
CSTF3-206ENST00000524827 PBRM1Q86U86 1689 aa25.31■■□□□ 1.64
CSTF3-206ENST00000524827 GAPVD1Q14C86 1478 aa25.28■■□□□ 1.64
CSTF3-206ENST00000524827 ABCA5Q8WWZ7 1642 aa25.23■■□□□ 1.63
CSTF3-206ENST00000524827 ABCA10Q8WWZ4 1543 aa25.23■■□□□ 1.63
CSTF3-206ENST00000524827 GRIN2AQ12879 1464 aa25.09■■□□□ 1.61
CSTF3-206ENST00000524827 ADAMTS12P58397 1594 aa25.06■■□□□ 1.6
CSTF3-206ENST00000524827 ERCC6L2Q5T890 1561 aa25.06■■□□□ 1.6
CSTF3-206ENST00000524827 WRNQ14191 1432 aaPredicted RBP eCLIP25.06■■□□□ 1.6
CSTF3-206ENST00000524827 SUPT5HO00267 1087 aaKnown RBP25.05■■□□□ 1.6
CSTF3-206ENST00000524827 NUP160Q12769 1436 aa25.03■■□□□ 1.6
CSTF3-206ENST00000524827 CEP170Q5SW79 1584 aa25.02■■□□□ 1.6
CSTF3-206ENST00000524827 BIVM-ERCC5R4GMW8 1640 aa25.01■■□□□ 1.59
CSTF3-206ENST00000524827 TOP2BQ02880 1626 aa25■■□□□ 1.59
CSTF3-206ENST00000524827 FHAD1B1AJZ9 1412 aa24.95■■□□□ 1.59
CSTF3-206ENST00000524827 SHROOM2Q13796 1616 aa24.94■■□□□ 1.58
CSTF3-206ENST00000524827 AEBP2Q6ZN18 517 aaPredicted RBP24.91■■□□□ 1.58
CSTF3-206ENST00000524827 ERICH3Q5RHP9 1530 aa24.91■■□□□ 1.58
CSTF3-206ENST00000524827 PRG4Q92954 1404 aaPredicted RBP24.78■■□□□ 1.56
CSTF3-206ENST00000524827 KIF13AQ9H1H9 1805 aa24.74■■□□□ 1.55
CSTF3-206ENST00000524827 RUSC2Q8N2Y8 1516 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms