RNA–Protein interactions for RNA: ENST00000524033.5

SPIDR-223, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 2

Gene SPIDR, Length 1,023 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-223ENST00000524033 AEBP2Q6ZN18 517 aaPredicted RBP20.76■□□□□ 0.91
SPIDR-223ENST00000524033 CHIC1Q5VXU3 224 aa20.62■□□□□ 0.89
SPIDR-223ENST00000524033 PHF23Q9BUL5 403 aaPredicted RBP18.1■□□□□ 0.49
SPIDR-223ENST00000524033 SENP3Q9H4L4 574 aaPredicted RBP17.69■□□□□ 0.42
SPIDR-223ENST00000524033 NISCHQ9Y2I1 1504 aa17.59■□□□□ 0.41
SPIDR-223ENST00000524033 PLPPR3Q6T4P5 718 aa16.95■□□□□ 0.3
SPIDR-223ENST00000524033 FOXD1Q16676 465 aa16.31■□□□□ 0.2
SPIDR-223ENST00000524033 ADRA2BP18089 450 aa15.97■□□□□ 0.15
SPIDR-223ENST00000524033 PPP6R1Q9UPN7 881 aa15.89■□□□□ 0.13
SPIDR-223ENST00000524033 ABCC9O60706 1549 aa15.74■□□□□ 0.11
SPIDR-223ENST00000524033 CCDC180Q9P1Z9 1646 aa15.61■□□□□ 0.09
SPIDR-223ENST00000524033 PIAS4Q8N2W9 510 aaPredicted RBP15.56■□□□□ 0.08
SPIDR-223ENST00000524033 DCAF8L2P0C7V8 631 aa15.03■□□□□ -0
SPIDR-223ENST00000524033 MSH5O43196 834 aa15.01□□□□□ -0.01
SPIDR-223ENST00000524033 PPP4R3CPQ6ZMV5 832 aa14.96□□□□□ -0.01
SPIDR-223ENST00000524033 RB1CC1Q8TDY2 1594 aa14.94□□□□□ -0.02
SPIDR-223ENST00000524033 KCNA4P22459 653 aa14.93□□□□□ -0.02
SPIDR-223ENST00000524033 NACADO15069 1562 aa14.85□□□□□ -0.03
SPIDR-223ENST00000524033 DNAJC5BQ9UF47 199 aa14.81□□□□□ -0.04
SPIDR-223ENST00000524033 PABPN1Q86U42 306 aaKnown RBP eCLIP14.77□□□□□ -0.05
SPIDR-223ENST00000524033 NCBP3Q53F19 620 aaKnown RBP14.74□□□□□ -0.05
SPIDR-223ENST00000524033 SCAF1Q9H7N4 1312 aaKnown RBP14.72□□□□□ -0.05
SPIDR-223ENST00000524033 MYO15BQ96JP2 1530 aa14.67□□□□□ -0.06
SPIDR-223ENST00000524033 ZCCHC6Q5VYS8 1495 aaKnown RBP14.55□□□□□ -0.08
SPIDR-223ENST00000524033 DCAF1Q9Y4B6 1507 aa14.5□□□□□ -0.09
SPIDR-223ENST00000524033 CNKSR2Q8WXI2 1034 aa14.48□□□□□ -0.09
SPIDR-223ENST00000524033 BICRAQ9NZM4 1560 aa14.47□□□□□ -0.09
SPIDR-223ENST00000524033 UNC13AQ9UPW8 1703 aa14.41□□□□□ -0.1
SPIDR-223ENST00000524033 NPM3O75607 178 aaKnown RBP14.4□□□□□ -0.1
SPIDR-223ENST00000524033 MAPK8IP2Q13387 824 aaPredicted RBP14.39□□□□□ -0.11
SPIDR-223ENST00000524033 SLC4A1APQ9BWU0 796 aaKnown RBP14.35□□□□□ -0.11
SPIDR-223ENST00000524033 EHMT2Q96KQ7 1210 aa14.34□□□□□ -0.11
SPIDR-223ENST00000524033 SCRIBQ14160 1630 aa14.31□□□□□ -0.12
SPIDR-223ENST00000524033 SHROOM4Q9ULL8 1493 aa14.31□□□□□ -0.12
SPIDR-223ENST00000524033 CECR2Q9BXF3 1484 aa14.18□□□□□ -0.14
SPIDR-223ENST00000524033 CC2D2AQ9P2K1 1620 aa14.15□□□□□ -0.14
SPIDR-223ENST00000524033 EIF4G1Q04637 1599 aaKnown RBP14.14□□□□□ -0.15
SPIDR-223ENST00000524033 DMRT2Q9Y5R5 561 aa14.11□□□□□ -0.15
SPIDR-223ENST00000524033 RNF216Q9NWF9 866 aaPredicted RBP14.09□□□□□ -0.15
SPIDR-223ENST00000524033 HOXD11P31277 338 aaPredicted RBP13.9□□□□□ -0.18
SPIDR-223ENST00000524033 CSRNP3Q8WYN3 585 aa13.87□□□□□ -0.19
SPIDR-223ENST00000524033 NCAPD3P42695 1498 aa13.78□□□□□ -0.2
SPIDR-223ENST00000524033 ATAD2BQ9ULI0 1458 aa13.73□□□□□ -0.21
SPIDR-223ENST00000524033 DCAF8L1A6NGE4 600 aa13.72□□□□□ -0.21
SPIDR-223ENST00000524033 FOXD4L1Q9NU39 408 aa13.69□□□□□ -0.22
SPIDR-223ENST00000524033 ZBTB22O15209 634 aa13.66□□□□□ -0.22
SPIDR-223ENST00000524033 SMARCA2P51531 1590 aa13.66□□□□□ -0.22
SPIDR-223ENST00000524033 SMARCA4P51532 1647 aa13.64□□□□□ -0.23
SPIDR-223ENST00000524033 BAZ1AQ9NRL2 1556 aaPredicted RBP13.62□□□□□ -0.23
SPIDR-223ENST00000524033 ERCC6Q03468 1493 aa13.61□□□□□ -0.23
SPIDR-223ENST00000524033 HMGXB3Q12766 1538 aa13.59□□□□□ -0.23
SPIDR-223ENST00000524033 BAZ1BQ9UIG0 1483 aaKnown RBP13.59□□□□□ -0.23
SPIDR-223ENST00000524033 DNAJC5Q9H3Z4 198 aa13.58□□□□□ -0.24
SPIDR-223ENST00000524033 MROH2BQ7Z745 1585 aa13.55□□□□□ -0.24
SPIDR-223ENST00000524033 CUX2O14529 1486 aa13.52□□□□□ -0.25
SPIDR-223ENST00000524033 NESP48681 1621 aa13.52□□□□□ -0.25
SPIDR-223ENST00000524033 PEG3Q9GZU2 1588 aa13.51□□□□□ -0.25
SPIDR-223ENST00000524033 SLC4A2P04920 1241 aa13.47□□□□□ -0.25
SPIDR-223ENST00000524033 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.43□□□□□ -0.263e-6■■□□□ 14.5
SPIDR-223ENST00000524033 PDS5BQ9NTI5 1447 aa13.41□□□□□ -0.26
SPIDR-223ENST00000524033 CADPSQ9ULU8 1353 aa13.41□□□□□ -0.26
SPIDR-223ENST00000524033 LAMC3Q9Y6N6 1575 aa13.38□□□□□ -0.27
SPIDR-223ENST00000524033 MYCNP04198 464 aaPredicted RBP13.36□□□□□ -0.27
SPIDR-223ENST00000524033 RSF1Q96T23 1441 aaPredicted RBP13.34□□□□□ -0.27
SPIDR-223ENST00000524033 WIZO95785 1651 aa13.33□□□□□ -0.28
SPIDR-223ENST00000524033 THOC2Q8NI27 1593 aaKnown RBP13.26□□□□□ -0.29
SPIDR-223ENST00000524033 MRC2Q9UBG0 1479 aa13.23□□□□□ -0.29
SPIDR-223ENST00000524033 CFTRP13569 1480 aa13.22□□□□□ -0.29
SPIDR-223ENST00000524033 FANCD2Q9BXW9 1451 aa13.2□□□□□ -0.3
SPIDR-223ENST00000524033 KIF21AQ7Z4S6 1674 aa13.2□□□□□ -0.3
SPIDR-223ENST00000524033 CEP164Q9UPV0 1460 aa13.19□□□□□ -0.3
SPIDR-223ENST00000524033 TOP2AP11388 1531 aaKnown RBP13.18□□□□□ -0.3
SPIDR-223ENST00000524033 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.16□□□□□ -0.3
SPIDR-223ENST00000524033 HNRNPUL2Q1KMD3 747 aaKnown RBP13.16□□□□□ -0.3
SPIDR-223ENST00000524033 WDR62O43379 1518 aa13.15□□□□□ -0.3
SPIDR-223ENST00000524033 ATXN8OSP0DMR3 200 aa13.15□□□□□ -0.3
SPIDR-223ENST00000524033 SUPT5HO00267 1087 aaKnown RBP13.12□□□□□ -0.31
SPIDR-223ENST00000524033 CCDC88BA6NC98 1476 aa13.11□□□□□ -0.31
SPIDR-223ENST00000524033 SAMD1Q6SPF0 538 aaPredicted RBP13.11□□□□□ -0.31
SPIDR-223ENST00000524033 U3KPZ7 1027 aaPredicted RBP13.1□□□□□ -0.31
SPIDR-223ENST00000524033 POTEDQ86YR6 584 aa13.08□□□□□ -0.32
SPIDR-223ENST00000524033 OSCARQ8IYS5 282 aa13.06□□□□□ -0.32
SPIDR-223ENST00000524033 URB2Q14146 1524 aaKnown RBP13.06□□□□□ -0.32
SPIDR-223ENST00000524033 TRIM41Q8WV44 630 aa13.02□□□□□ -0.33
SPIDR-223ENST00000524033 APLP2Q06481 763 aa13□□□□□ -0.33
SPIDR-223ENST00000524033 IFT140Q96RY7 1462 aa12.94□□□□□ -0.34
SPIDR-223ENST00000524033 ABCC8Q09428 1581 aa12.94□□□□□ -0.34
SPIDR-223ENST00000524033 TOPBP1Q92547 1522 aa12.93□□□□□ -0.34
SPIDR-223ENST00000524033 ZNF608Q9ULD9 1512 aaPredicted RBP12.92□□□□□ -0.34
SPIDR-223ENST00000524033 HRCP23327 699 aa12.91□□□□□ -0.34
SPIDR-223ENST00000524033 ATF5Q9Y2D1 282 aaPredicted RBP12.9□□□□□ -0.34
SPIDR-223ENST00000524033 AQRO60306 1485 aaKnown RBP eCLIP12.85□□□□□ -0.35
SPIDR-223ENST00000524033 FBLN2P98095 1184 aa12.85□□□□□ -0.35
SPIDR-223ENST00000524033 DNMBPQ6XZF7 1577 aa12.85□□□□□ -0.35
SPIDR-223ENST00000524033 SOGA1O94964 1423 aa12.83□□□□□ -0.36
SPIDR-223ENST00000524033 PRDM2Q13029 1718 aa12.82□□□□□ -0.36
SPIDR-223ENST00000524033 TDRD9Q8NDG6 1382 aaKnown RBP12.81□□□□□ -0.36
SPIDR-223ENST00000524033 POLA1P09884 1462 aaPredicted RBP12.81□□□□□ -0.36
SPIDR-223ENST00000524033 RNF39Q9H2S5 420 aa12.81□□□□□ -0.36
SPIDR-223ENST00000524033 RAD54L2Q9Y4B4 1467 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms