RNA–Protein interactions for RNA: ENST00000523993.5

FAM49B-228, Transcript of family with sequence similarity 49 member B, humanhuman

TSL 3

Gene FAM49B, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM49B-228ENST00000523993 AEBP2Q6ZN18 517 aaPredicted RBP16.88■□□□□ 0.29
FAM49B-228ENST00000523993 CHIC1Q5VXU3 224 aa15.97■□□□□ 0.15
FAM49B-228ENST00000523993 NISCHQ9Y2I1 1504 aa15.07■□□□□ 0
FAM49B-228ENST00000523993 SENP3Q9H4L4 574 aaPredicted RBP14.63□□□□□ -0.07
FAM49B-228ENST00000523993 PHF23Q9BUL5 403 aaPredicted RBP14.31□□□□□ -0.12
FAM49B-228ENST00000523993 CCDC180Q9P1Z9 1646 aa13.57□□□□□ -0.24
FAM49B-228ENST00000523993 FOXD1Q16676 465 aa13.57□□□□□ -0.24
FAM49B-228ENST00000523993 ABCC9O60706 1549 aa13.33□□□□□ -0.28
FAM49B-228ENST00000523993 POTEDQ86YR6 584 aa13.22□□□□□ -0.29
FAM49B-228ENST00000523993 MSH5O43196 834 aa12.98□□□□□ -0.33
FAM49B-228ENST00000523993 RB1CC1Q8TDY2 1594 aa12.81□□□□□ -0.36
FAM49B-228ENST00000523993 PLPPR3Q6T4P5 718 aa12.78□□□□□ -0.36
FAM49B-228ENST00000523993 NACADO15069 1562 aa12.77□□□□□ -0.36
FAM49B-228ENST00000523993 MYO15BQ96JP2 1530 aa12.68□□□□□ -0.38
FAM49B-228ENST00000523993 PIAS4Q8N2W9 510 aaPredicted RBP12.68□□□□□ -0.38
FAM49B-228ENST00000523993 UNC13AQ9UPW8 1703 aa12.6□□□□□ -0.39
FAM49B-228ENST00000523993 DCAF1Q9Y4B6 1507 aa12.53□□□□□ -0.4
FAM49B-228ENST00000523993 ZCCHC6Q5VYS8 1495 aaKnown RBP12.52□□□□□ -0.41
FAM49B-228ENST00000523993 DCAF8L2P0C7V8 631 aa12.48□□□□□ -0.41
FAM49B-228ENST00000523993 BICRAQ9NZM4 1560 aa12.46□□□□□ -0.42
FAM49B-228ENST00000523993 DNAJC5BQ9UF47 199 aa12.44□□□□□ -0.42
FAM49B-228ENST00000523993 PABPN1Q86U42 306 aaKnown RBP eCLIP12.36□□□□□ -0.43
FAM49B-228ENST00000523993 SHROOM4Q9ULL8 1493 aa12.35□□□□□ -0.43
FAM49B-228ENST00000523993 ADRA2BP18089 450 aa12.32□□□□□ -0.44
FAM49B-228ENST00000523993 PPP6R1Q9UPN7 881 aa12.32□□□□□ -0.44
FAM49B-228ENST00000523993 SCRIBQ14160 1630 aa12.23□□□□□ -0.45
FAM49B-228ENST00000523993 CC2D2AQ9P2K1 1620 aa12.12□□□□□ -0.47
FAM49B-228ENST00000523993 EIF4G1Q04637 1599 aaKnown RBP12.12□□□□□ -0.47
FAM49B-228ENST00000523993 CECR2Q9BXF3 1484 aa12.03□□□□□ -0.48
FAM49B-228ENST00000523993 EHMT2Q96KQ7 1210 aa12.01□□□□□ -0.49
FAM49B-228ENST00000523993 KCNA4P22459 653 aa11.94□□□□□ -0.5
FAM49B-228ENST00000523993 NCAPD3P42695 1498 aa11.77□□□□□ -0.52
FAM49B-228ENST00000523993 SMARCA4P51532 1647 aa11.75□□□□□ -0.53
FAM49B-228ENST00000523993 ATAD2BQ9ULI0 1458 aa11.72□□□□□ -0.53
FAM49B-228ENST00000523993 SMARCA2P51531 1590 aa11.71□□□□□ -0.53
FAM49B-228ENST00000523993 HMGXB3Q12766 1538 aa11.71□□□□□ -0.53
FAM49B-228ENST00000523993 PEG3Q9GZU2 1588 aa11.71□□□□□ -0.54
FAM49B-228ENST00000523993 BAZ1AQ9NRL2 1556 aaPredicted RBP11.7□□□□□ -0.54
FAM49B-228ENST00000523993 BAZ1BQ9UIG0 1483 aaKnown RBP11.58□□□□□ -0.56
FAM49B-228ENST00000523993 MROH2BQ7Z745 1585 aa11.58□□□□□ -0.56
FAM49B-228ENST00000523993 CUX2O14529 1486 aa11.54□□□□□ -0.56
FAM49B-228ENST00000523993 LAMC3Q9Y6N6 1575 aa11.51□□□□□ -0.57
FAM49B-228ENST00000523993 CSRNP3Q8WYN3 585 aa11.49□□□□□ -0.57
FAM49B-228ENST00000523993 DMRT2Q9Y5R5 561 aa11.49□□□□□ -0.57
FAM49B-228ENST00000523993 ERCC6Q03468 1493 aa11.49□□□□□ -0.57
FAM49B-228ENST00000523993 NESP48681 1621 aa11.49□□□□□ -0.57
FAM49B-228ENST00000523993 SLC4A1APQ9BWU0 796 aaKnown RBP11.48□□□□□ -0.57
FAM49B-228ENST00000523993 WIZO95785 1651 aa11.46□□□□□ -0.57
FAM49B-228ENST00000523993 SCAF1Q9H7N4 1312 aaKnown RBP11.44□□□□□ -0.58
FAM49B-228ENST00000523993 THOC2Q8NI27 1593 aaKnown RBP11.44□□□□□ -0.58
FAM49B-228ENST00000523993 KIF21AQ7Z4S6 1674 aa11.42□□□□□ -0.58
FAM49B-228ENST00000523993 MAPK8IP2Q13387 824 aaPredicted RBP11.4□□□□□ -0.58
FAM49B-228ENST00000523993 DNAJC5Q9H3Z4 198 aa11.4□□□□□ -0.58
FAM49B-228ENST00000523993 PDS5BQ9NTI5 1447 aa11.38□□□□□ -0.59
FAM49B-228ENST00000523993 PPP4R3CPQ6ZMV5 832 aa11.38□□□□□ -0.59
FAM49B-228ENST00000523993 CADPSQ9ULU8 1353 aa11.38□□□□□ -0.59
FAM49B-228ENST00000523993 CACNB1Q02641 598 aaPredicted RBP11.37□□□□□ -0.59
FAM49B-228ENST00000523993 RSF1Q96T23 1441 aaPredicted RBP11.36□□□□□ -0.59
FAM49B-228ENST00000523993 TOP2AP11388 1531 aaKnown RBP11.34□□□□□ -0.59
FAM49B-228ENST00000523993 CFTRP13569 1480 aa11.3□□□□□ -0.6
FAM49B-228ENST00000523993 WDR62O43379 1518 aa11.3□□□□□ -0.6
FAM49B-228ENST00000523993 PRDM2Q13029 1718 aa11.29□□□□□ -0.6
FAM49B-228ENST00000523993 MRC2Q9UBG0 1479 aa11.28□□□□□ -0.6
FAM49B-228ENST00000523993 CEP164Q9UPV0 1460 aa11.25□□□□□ -0.61
FAM49B-228ENST00000523993 FANCD2Q9BXW9 1451 aa11.24□□□□□ -0.61
FAM49B-228ENST00000523993 NCBP3Q53F19 620 aaKnown RBP11.23□□□□□ -0.61
FAM49B-228ENST00000523993 CCDC88BA6NC98 1476 aa11.18□□□□□ -0.62
FAM49B-228ENST00000523993 URB2Q14146 1524 aaKnown RBP11.15□□□□□ -0.62
FAM49B-228ENST00000523993 DCAF8L1A6NGE4 600 aa11.13□□□□□ -0.63
FAM49B-228ENST00000523993 NPM3O75607 178 aaKnown RBP11.13□□□□□ -0.63
FAM49B-228ENST00000523993 ABCC8Q09428 1581 aa11.07□□□□□ -0.64
FAM49B-228ENST00000523993 TOPBP1Q92547 1522 aa11.05□□□□□ -0.64
FAM49B-228ENST00000523993 DNMBPQ6XZF7 1577 aa11.03□□□□□ -0.64
FAM49B-228ENST00000523993 ZBTB22O15209 634 aa11.03□□□□□ -0.64
FAM49B-228ENST00000523993 IFT140Q96RY7 1462 aa11.03□□□□□ -0.64
FAM49B-228ENST00000523993 TARBP1Q13395 1621 aaKnown RBP10.99□□□□□ -0.65
FAM49B-228ENST00000523993 ZNF608Q9ULD9 1512 aaPredicted RBP10.98□□□□□ -0.65
FAM49B-228ENST00000523993 EIF4G3O43432 1585 aaKnown RBP10.96□□□□□ -0.65
FAM49B-228ENST00000523993 OSCARQ8IYS5 282 aa10.95□□□□□ -0.66
FAM49B-228ENST00000523993 RNF39Q9H2S5 420 aa10.95□□□□□ -0.66
FAM49B-228ENST00000523993 WDR97A6NE52 1622 aa10.94□□□□□ -0.66
FAM49B-228ENST00000523993 POLA1P09884 1462 aaPredicted RBP10.93□□□□□ -0.66
FAM49B-228ENST00000523993 HOXD11P31277 338 aaPredicted RBP10.89□□□□□ -0.67
FAM49B-228ENST00000523993 CHD1O14646 1710 aa10.89□□□□□ -0.67
FAM49B-228ENST00000523993 CUX1P39880 1505 aa10.89□□□□□ -0.67
FAM49B-228ENST00000523993 CNKSR2Q8WXI2 1034 aa10.88□□□□□ -0.67
FAM49B-228ENST00000523993 AQRO60306 1485 aaKnown RBP eCLIP10.87□□□□□ -0.67
FAM49B-228ENST00000523993 FGD5Q6ZNL6 1462 aa10.87□□□□□ -0.67
FAM49B-228ENST00000523993 RIMBP3CA6NJZ7 1639 aa10.86□□□□□ -0.67
FAM49B-228ENST00000523993 RIMBP3BA6NNM3 1639 aa10.86□□□□□ -0.67
FAM49B-228ENST00000523993 RIMBP3Q9UFD9 1639 aa10.86□□□□□ -0.67
FAM49B-228ENST00000523993 SOGA1O94964 1423 aa10.85□□□□□ -0.67
FAM49B-228ENST00000523993 RAD54L2Q9Y4B4 1467 aa10.85□□□□□ -0.67
FAM49B-228ENST00000523993 C1QBPQ07021 282 aaKnown RBP10.84□□□□□ -0.67
FAM49B-228ENST00000523993 ARHGEF11O15085 1522 aa10.82□□□□□ -0.68
FAM49B-228ENST00000523993 MAGI1Q96QZ7 1491 aaPredicted RBP10.81□□□□□ -0.68
FAM49B-228ENST00000523993 PBRM1Q86U86 1689 aa10.8□□□□□ -0.68
FAM49B-228ENST00000523993 TRIM41Q8WV44 630 aa10.8□□□□□ -0.68
FAM49B-228ENST00000523993 TDRD9Q8NDG6 1382 aaKnown RBP10.79□□□□□ -0.68
FAM49B-228ENST00000523993 SLC24A1O60721 1099 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms