RNA–Protein interactions for RNA: ENST00000523283.5

LINC00534-202, long intergenic non-protein coding RNA 534, humanhuman

TSL 2

Gene LINC00534, Length 772 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00534-202ENST00000523283 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.6□□□□□ -1.355e-9■■■■■ 94.4
LINC00534-202ENST00000523283 WRNQ14191 1432 aaPredicted RBP eCLIP10.34□□□□□ -0.751e-7■■■■■ 66.8
LINC00534-202ENST00000523283 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.05□□□□□ -1.281e-6■■■■■ 62.9
LINC00534-202ENST00000523283 SF3B1O75533 1304 aaKnown RBP eCLIP6.64□□□□□ -1.351e-6■■■■■ 56.6
LINC00534-202ENST00000523283 PUS1Q9Y606 427 aaKnown RBP eCLIP5.12□□□□□ -1.591e-5■■■■■ 49.7
LINC00534-202ENST00000523283 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.91□□□□□ -1.463e-7■■■■■ 46.2
LINC00534-202ENST00000523283 FMR1Q06787 632 aaKnown RBP eCLIP7.17□□□□□ -1.261e-11■■■■■ 36.3
LINC00534-202ENST00000523283 U2AF2P26368 475 aaKnown RBP eCLIP7.38□□□□□ -1.232e-10■■■■■ 28.9
LINC00534-202ENST00000523283 TAF15Q92804 592 aaKnown RBP eCLIP5.2□□□□□ -1.581e-7■■■■■ 28
LINC00534-202ENST00000523283 SF3B4Q15427 424 aaKnown RBP eCLIP5.59□□□□□ -1.519e-6■■■■■ 27.7
LINC00534-202ENST00000523283 LARP4Q71RC2 724 aaKnown RBP eCLIP6.27□□□□□ -1.414e-7■■■■■ 27.5
LINC00534-202ENST00000523283 SRSF1Q07955 248 aaKnown RBP eCLIP5.11□□□□□ -1.591e-7■■■■■ 27
LINC00534-202ENST00000523283 PTBP1P26599 531 aaKnown RBP eCLIP5.69□□□□□ -1.56e-7■■■■■ 27
LINC00534-202ENST00000523283 SRSF7Q16629 238 aaKnown RBP eCLIP5.43□□□□□ -1.542e-7■■■■□ 24.5
LINC00534-202ENST00000523283 QKIQ96PU8 341 aaKnown RBP eCLIP6.62□□□□□ -1.351e-6■■■■□ 22.5
LINC00534-202ENST00000523283 MATR3P43243 847 aaKnown RBP eCLIP6.97□□□□□ -1.291e-6■■■■□ 22
LINC00534-202ENST00000523283 TARDBPQ13148 414 aaKnown RBP eCLIP5.96□□□□□ -1.466e-7■■■■□ 20.3
LINC00534-202ENST00000523283 SAFBQ15424 915 aaKnown RBP eCLIP7.44□□□□□ -1.223e-6■■■□□ 19.1
LINC00534-202ENST00000523283 NOLC1Q14978 699 aaKnown RBP eCLIP7.14□□□□□ -1.275e-7■■■□□ 18.6
LINC00534-202ENST00000523283 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.69□□□□□ -1.181e-6■■■□□ 18.4
LINC00534-202ENST00000523283 HNRNPKP61978 463 aaKnown RBP eCLIP6.06□□□□□ -1.442e-7■■■□□ 18.2
LINC00534-202ENST00000523283 WDR43Q15061 677 aaKnown RBP eCLIP8.57□□□□□ -1.043e-7■■■□□ 17.9
LINC00534-202ENST00000523283 ILF3Q12906 894 aaKnown RBP eCLIP6.15□□□□□ -1.424e-7■■■□□ 17.6
LINC00534-202ENST00000523283 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.12□□□□□ -1.276e-7■■■□□ 16.6
LINC00534-202ENST00000523283 SAFB2Q14151 953 aaKnown RBP eCLIP8.63□□□□□ -1.038e-7■■■□□ 16.3
LINC00534-202ENST00000523283 RBFOX2O43251 390 aaKnown RBP eCLIP5.27□□□□□ -1.572e-6■■■□□ 15.6
LINC00534-202ENST00000523283 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.7□□□□□ -1.346e-7■■■□□ 15.2
LINC00534-202ENST00000523283 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.19□□□□□ -0.941e-6■■■□□ 14.8
LINC00534-202ENST00000523283 U2AF1Q01081 240 aaKnown RBP eCLIP8.43□□□□□ -1.062e-14■■■□□ 14.7
LINC00534-202ENST00000523283 KHSRPQ92945 711 aaKnown RBP eCLIP8.99□□□□□ -0.971e-7■■□□□ 14.5
LINC00534-202ENST00000523283 HLTFQ14527 1009 aaKnown RBP eCLIP6.77□□□□□ -1.339e-7■■□□□ 14.5
LINC00534-202ENST00000523283 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.86□□□□□ -1.475e-7■■□□□ 14.4
LINC00534-202ENST00000523283 NIPBLQ6KC79 2804 aaeCLIP4.69□□□□□ -1.664e-7■■□□□ 14
LINC00534-202ENST00000523283 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.1□□□□□ -1.433e-8■■□□□ 12.2
LINC00534-202ENST00000523283 HNRNPLP14866 589 aaKnown RBP eCLIP6.34□□□□□ -1.391e-7■■□□□ 12.1
LINC00534-202ENST00000523283 XRCC6P12956 609 aaKnown RBP eCLIP7.41□□□□□ -1.221e-7■■□□□ 11.9
LINC00534-202ENST00000523283 NONOQ15233 471 aaKnown RBP eCLIP7.29□□□□□ -1.248e-9■■□□□ 11.7
LINC00534-202ENST00000523283 TIA1P31483 386 aaKnown RBP eCLIP6.16□□□□□ -1.427e-11■■□□□ 11.4
LINC00534-202ENST00000523283 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.89□□□□□ -1.472e-7■□□□□ 11.2
LINC00534-202ENST00000523283 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.76□□□□□ -1.332e-6■□□□□ 10.7
LINC00534-202ENST00000523283 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.47□□□□□ -0.891e-6■□□□□ 9.9
LINC00534-202ENST00000523283 HNRNPMP52272 730 aaKnown RBP eCLIP9.24□□□□□ -0.938e-8■□□□□ 8.7
LINC00534-202ENST00000523283 RPS3P23396 243 aaKnown RBP eCLIP6.35□□□□□ -1.396e-6■□□□□ 8.7
Retrieved 43 of 43 RNA–protein pairs in 9.4 ms