RNA–Protein interactions for RNA: ENST00000522987.1

MRPS28-209, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 3

Gene MRPS28, Length 487 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-209ENST00000522987 NISCHQ9Y2I1 1504 aa38.68■■■■□ 3.78
MRPS28-209ENST00000522987 ABCC9O60706 1549 aa34.86■■■■□ 3.17
MRPS28-209ENST00000522987 CCDC180Q9P1Z9 1646 aa34.74■■■■□ 3.15
MRPS28-209ENST00000522987 RB1CC1Q8TDY2 1594 aa33.06■■■□□ 2.88
MRPS28-209ENST00000522987 DCAF8L2P0C7V8 631 aa32.83■■■□□ 2.85
MRPS28-209ENST00000522987 NACADO15069 1562 aa32.79■■■□□ 2.84
MRPS28-209ENST00000522987 DNAJC5BQ9UF47 199 aa32.67■■■□□ 2.82
MRPS28-209ENST00000522987 UNC13AQ9UPW8 1703 aa32.53■■■□□ 2.8
MRPS28-209ENST00000522987 PABPN1Q86U42 306 aaKnown RBP eCLIP32.45■■■□□ 2.79
MRPS28-209ENST00000522987 MYO15BQ96JP2 1530 aa32.21■■■□□ 2.75
MRPS28-209ENST00000522987 BICRAQ9NZM4 1560 aa32.15■■■□□ 2.74
MRPS28-209ENST00000522987 ZCCHC6Q5VYS8 1495 aaKnown RBP32.05■■■□□ 2.72
MRPS28-209ENST00000522987 DCAF1Q9Y4B6 1507 aa31.84■■■□□ 2.69
MRPS28-209ENST00000522987 SCRIBQ14160 1630 aa31.8■■■□□ 2.68
MRPS28-209ENST00000522987 SHROOM4Q9ULL8 1493 aa31.49■■■□□ 2.63
MRPS28-209ENST00000522987 CC2D2AQ9P2K1 1620 aa31.46■■■□□ 2.63
MRPS28-209ENST00000522987 EIF4G1Q04637 1599 aaKnown RBP31.34■■■□□ 2.61
MRPS28-209ENST00000522987 CECR2Q9BXF3 1484 aa31.32■■■□□ 2.6
MRPS28-209ENST00000522987 SMARCA4P51532 1647 aa30.25■■■□□ 2.43
MRPS28-209ENST00000522987 NCAPD3P42695 1498 aa30.23■■■□□ 2.43
MRPS28-209ENST00000522987 ATAD2BQ9ULI0 1458 aa30.2■■■□□ 2.43
MRPS28-209ENST00000522987 SMARCA2P51531 1590 aa30.11■■■□□ 2.41
MRPS28-209ENST00000522987 ERCC6Q03468 1493 aa30.06■■■□□ 2.4
MRPS28-209ENST00000522987 HMGXB3Q12766 1538 aa30.05■■■□□ 2.4
MRPS28-209ENST00000522987 BAZ1AQ9NRL2 1556 aaPredicted RBP30.03■■■□□ 2.4
MRPS28-209ENST00000522987 NESP48681 1621 aa29.96■■■□□ 2.39
MRPS28-209ENST00000522987 BAZ1BQ9UIG0 1483 aaKnown RBP29.95■■■□□ 2.39
MRPS28-209ENST00000522987 DNAJC5Q9H3Z4 198 aa29.89■■■□□ 2.38
MRPS28-209ENST00000522987 MROH2BQ7Z745 1585 aa29.89■■■□□ 2.38
MRPS28-209ENST00000522987 CUX2O14529 1486 aa29.88■■■□□ 2.37
MRPS28-209ENST00000522987 PEG3Q9GZU2 1588 aa29.82■■■□□ 2.36
MRPS28-209ENST00000522987 KIF21AQ7Z4S6 1674 aa29.63■■■□□ 2.33
MRPS28-209ENST00000522987 LAMC3Q9Y6N6 1575 aa29.62■■■□□ 2.33
MRPS28-209ENST00000522987 WIZO95785 1651 aa29.61■■■□□ 2.33
MRPS28-209ENST00000522987 THOC2Q8NI27 1593 aaKnown RBP29.6■■■□□ 2.33
MRPS28-209ENST00000522987 PDS5BQ9NTI5 1447 aa29.4■■■□□ 2.3
MRPS28-209ENST00000522987 CADPSQ9ULU8 1353 aa29.34■■■□□ 2.29
MRPS28-209ENST00000522987 MRC2Q9UBG0 1479 aa29.21■■■□□ 2.27
MRPS28-209ENST00000522987 RSF1Q96T23 1441 aaPredicted RBP29.2■■■□□ 2.26
MRPS28-209ENST00000522987 WDR62O43379 1518 aa29.13■■■□□ 2.25
MRPS28-209ENST00000522987 CEP164Q9UPV0 1460 aa29.1■■■□□ 2.25
MRPS28-209ENST00000522987 TOP2AP11388 1531 aaKnown RBP29.1■■■□□ 2.25
MRPS28-209ENST00000522987 FANCD2Q9BXW9 1451 aa29.08■■■□□ 2.25
MRPS28-209ENST00000522987 CFTRP13569 1480 aa29■■■□□ 2.23
MRPS28-209ENST00000522987 PRDM2Q13029 1718 aa28.9■■■□□ 2.22
MRPS28-209ENST00000522987 URB2Q14146 1524 aaKnown RBP28.87■■■□□ 2.21
MRPS28-209ENST00000522987 CCDC88BA6NC98 1476 aa28.79■■■□□ 2.2
MRPS28-209ENST00000522987 TRIM41Q8WV44 630 aa28.77■■■□□ 2.2
MRPS28-209ENST00000522987 TOPBP1Q92547 1522 aa28.54■■■□□ 2.16
MRPS28-209ENST00000522987 ZNF608Q9ULD9 1512 aaPredicted RBP28.54■■■□□ 2.16
MRPS28-209ENST00000522987 OSCARQ8IYS5 282 aa28.54■■■□□ 2.16
MRPS28-209ENST00000522987 IFT140Q96RY7 1462 aa28.47■■■□□ 2.15
MRPS28-209ENST00000522987 DNMBPQ6XZF7 1577 aa28.43■■■□□ 2.14
MRPS28-209ENST00000522987 EIF4G3O43432 1585 aaKnown RBP28.4■■■□□ 2.14
MRPS28-209ENST00000522987 ABCC8Q09428 1581 aa28.36■■■□□ 2.13
MRPS28-209ENST00000522987 RIMBP3CA6NJZ7 1639 aa28.31■■■□□ 2.12
MRPS28-209ENST00000522987 RIMBP3BA6NNM3 1639 aa28.31■■■□□ 2.12
MRPS28-209ENST00000522987 RIMBP3Q9UFD9 1639 aa28.31■■■□□ 2.12
MRPS28-209ENST00000522987 TARBP1Q13395 1621 aaKnown RBP28.3■■■□□ 2.12
MRPS28-209ENST00000522987 CHD1O14646 1710 aa28.29■■■□□ 2.12
MRPS28-209ENST00000522987 AQRO60306 1485 aaKnown RBP eCLIP28.27■■■□□ 2.12
MRPS28-209ENST00000522987 POLA1P09884 1462 aaPredicted RBP28.24■■■□□ 2.11
MRPS28-209ENST00000522987 RAD54L2Q9Y4B4 1467 aa28.21■■■□□ 2.11
MRPS28-209ENST00000522987 ARHGEF11O15085 1522 aa28.15■■■□□ 2.1
MRPS28-209ENST00000522987 FBLN2P98095 1184 aa28.14■■■□□ 2.1
MRPS28-209ENST00000522987 TDRD9Q8NDG6 1382 aaKnown RBP28.1■■■□□ 2.09
MRPS28-209ENST00000522987 SOGA1O94964 1423 aa28.09■■■□□ 2.09
MRPS28-209ENST00000522987 FGD5Q6ZNL6 1462 aa28.09■■■□□ 2.09
MRPS28-209ENST00000522987 CUX1P39880 1505 aa28.08■■■□□ 2.08
MRPS28-209ENST00000522987 SUPT5HO00267 1087 aaKnown RBP28.05■■■□□ 2.08
MRPS28-209ENST00000522987 SNAPC4Q5SXM2 1469 aa27.98■■■□□ 2.07
MRPS28-209ENST00000522987 CYB5RLQ6IPT4 315 aa27.97■■■□□ 2.07
MRPS28-209ENST00000522987 WDR97A6NE52 1622 aa27.93■■■□□ 2.06
MRPS28-209ENST00000522987 PBRM1Q86U86 1689 aa27.89■■■□□ 2.06
MRPS28-209ENST00000522987 ARAP1Q96P48 1450 aa27.89■■■□□ 2.05
MRPS28-209ENST00000522987 GRIN2BQ13224 1484 aa27.83■■■□□ 2.05
MRPS28-209ENST00000522987 CHMP7Q8WUX9 453 aaPredicted RBP27.83■■■□□ 2.05
MRPS28-209ENST00000522987 MAGI1Q96QZ7 1491 aaPredicted RBP27.81■■■□□ 2.04
MRPS28-209ENST00000522987 CLASP1Q7Z460 1538 aa27.8■■■□□ 2.04
MRPS28-209ENST00000522987 SYNJ1O43426 1573 aa27.78■■■□□ 2.04
MRPS28-209ENST00000522987 GAPVD1Q14C86 1478 aa27.76■■■□□ 2.04
MRPS28-209ENST00000522987 SYNJ2O15056 1496 aa27.74■■■□□ 2.03
MRPS28-209ENST00000522987 ABCA5Q8WWZ7 1642 aa27.73■■■□□ 2.03
MRPS28-209ENST00000522987 TRHP20396 242 aaPredicted RBP27.7■■■□□ 2.02
MRPS28-209ENST00000522987 ABCA10Q8WWZ4 1543 aa27.69■■■□□ 2.02
MRPS28-209ENST00000522987 BIVM-ERCC5R4GMW8 1640 aa27.63■■■□□ 2.01
MRPS28-209ENST00000522987 TOP2BQ02880 1626 aa27.59■■■□□ 2.01
MRPS28-209ENST00000522987 WRNQ14191 1432 aaPredicted RBP eCLIP27.58■■■□□ 2
MRPS28-209ENST00000522987 ADAMTS12P58397 1594 aa27.53■■■□□ 2
MRPS28-209ENST00000522987 GRIN2AQ12879 1464 aa27.5■■□□□ 1.99
MRPS28-209ENST00000522987 ERCC6L2Q5T890 1561 aa27.48■■□□□ 1.99
MRPS28-209ENST00000522987 CEP170Q5SW79 1584 aa27.47■■□□□ 1.99
MRPS28-209ENST00000522987 FHAD1B1AJZ9 1412 aa27.36■■□□□ 1.97
MRPS28-209ENST00000522987 NUP160Q12769 1436 aa27.36■■□□□ 1.97
MRPS28-209ENST00000522987 ERICH3Q5RHP9 1530 aa27.34■■□□□ 1.97
MRPS28-209ENST00000522987 SHROOM2Q13796 1616 aa27.3■■□□□ 1.96
MRPS28-209ENST00000522987 PRG4Q92954 1404 aaPredicted RBP27.16■■□□□ 1.94
MRPS28-209ENST00000522987 RUSC2Q8N2Y8 1516 aa27.15■■□□□ 1.94
MRPS28-209ENST00000522987 JPH4Q96JJ6 628 aa27.1■■□□□ 1.93
MRPS28-209ENST00000522987 KIF13AQ9H1H9 1805 aa27.06■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms