RNA–Protein interactions for RNA: ENST00000521713.1

USP42-207, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 5,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-207ENST00000521713 DCAF8L2P0C7V8 631 aa28.75■■■□□ 2.19
USP42-207ENST00000521713 NISCHQ9Y2I1 1504 aa28.4■■■□□ 2.14
USP42-207ENST00000521713 SUPT5HO00267 1087 aaKnown RBP26.9■■□□□ 1.9
USP42-207ENST00000521713 SHROOM4Q9ULL8 1493 aa26.63■■□□□ 1.85
USP42-207ENST00000521713 EHMT2Q96KQ7 1210 aa25.65■■□□□ 1.7
USP42-207ENST00000521713 PELP1Q8IZL8 1130 aaKnown RBP25.62■■□□□ 1.69
USP42-207ENST00000521713 APLP2Q06481 763 aa25.54■■□□□ 1.68
USP42-207ENST00000521713 FAM9AQ8IZU1 332 aaPredicted RBP25.52■■□□□ 1.68
USP42-207ENST00000521713 TRIM41Q8WV44 630 aa25.1■■□□□ 1.61
USP42-207ENST00000521713 MYT1Q01538 1121 aa25.1■■□□□ 1.61
USP42-207ENST00000521713 RANGAP1P46060 587 aaPredicted RBP24.82■■□□□ 1.56
USP42-207ENST00000521713 UBTFP17480 764 aaKnown RBP24.75■■□□□ 1.55
USP42-207ENST00000521713 TTBK1Q5TCY1 1321 aaPredicted RBP24.71■■□□□ 1.55
USP42-207ENST00000521713 ATP1B4Q9UN42 357 aaPredicted RBP24.71■■□□□ 1.55
USP42-207ENST00000521713 CENPBP07199 599 aaPredicted RBP24.67■■□□□ 1.54
USP42-207ENST00000521713 ZEB1P37275 1124 aaPredicted RBP24.63■■□□□ 1.53
USP42-207ENST00000521713 ABCC9O60706 1549 aa24.61■■□□□ 1.53
USP42-207ENST00000521713 PCGF6Q9BYE7 350 aa24.46■■□□□ 1.51
USP42-207ENST00000521713 CCER1Q8TC90 406 aaPredicted RBP24.38■■□□□ 1.49
USP42-207ENST00000521713 ERICH6Q7L0X2 663 aa24.33■■□□□ 1.48
USP42-207ENST00000521713 PABPN1Q86U42 306 aaKnown RBP eCLIP24.3■■□□□ 1.48
USP42-207ENST00000521713 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.06■■□□□ 1.44
USP42-207ENST00000521713 HNRNPUL2Q1KMD3 747 aaKnown RBP24.06■■□□□ 1.44
USP42-207ENST00000521713 CHIC1Q5VXU3 224 aa23.97■■□□□ 1.43
USP42-207ENST00000521713 MYT1LQ9UL68 1186 aa23.91■■□□□ 1.42
USP42-207ENST00000521713 PPARGC1BQ86YN6 1023 aaKnown RBP23.85■■□□□ 1.41
USP42-207ENST00000521713 NEFLP07196 543 aa23.82■■□□□ 1.4
USP42-207ENST00000521713 HRCP23327 699 aa23.79■■□□□ 1.4
USP42-207ENST00000521713 TRIM26Q12899 539 aaPredicted RBP23.76■■□□□ 1.39
USP42-207ENST00000521713 LOC105371045A0A1W2PR82 267 aa23.71■■□□□ 1.39
USP42-207ENST00000521713 ITGAEP38570 1179 aa23.71■■□□□ 1.39
USP42-207ENST00000521713 YTHDC1Q96MU7 727 aaKnown RBP23.49■■□□□ 1.35
USP42-207ENST00000521713 CCDC180Q9P1Z9 1646 aa23.49■■□□□ 1.35
USP42-207ENST00000521713 ZCCHC6Q5VYS8 1495 aaKnown RBP23.47■■□□□ 1.35
USP42-207ENST00000521713 SCRIBQ14160 1630 aa23.47■■□□□ 1.35
USP42-207ENST00000521713 FBLN2P98095 1184 aa23.45■■□□□ 1.34
USP42-207ENST00000521713 FAM50AQ14320 339 aaKnown RBP23.3■■□□□ 1.32
USP42-207ENST00000521713 POLR3GLQ9BT43 218 aa23.27■■□□□ 1.32
USP42-207ENST00000521713 CSRNP3Q8WYN3 585 aa23.21■■□□□ 1.31
USP42-207ENST00000521713 RB1CC1Q8TDY2 1594 aa23.17■■□□□ 1.3
USP42-207ENST00000521713 TRIM52Q96A61 297 aa23.14■■□□□ 1.3
USP42-207ENST00000521713 DAXXQ9UER7 740 aaPredicted RBP23.06■■□□□ 1.28
USP42-207ENST00000521713 CDK11AQ9UQ88 783 aaPredicted RBP23.02■■□□□ 1.28
USP42-207ENST00000521713 P3H3Q8IVL6 736 aa23■■□□□ 1.27
USP42-207ENST00000521713 SLC4A1APQ9BWU0 796 aaKnown RBP22.99■■□□□ 1.27
USP42-207ENST00000521713 NACADO15069 1562 aa22.96■■□□□ 1.27
USP42-207ENST00000521713 RTL5Q5HYW3 569 aaPredicted RBP22.89■■□□□ 1.26
USP42-207ENST00000521713 DIEXFQ68CQ4 756 aaKnown RBP22.88■■□□□ 1.25
USP42-207ENST00000521713 CNGB1Q14028 1251 aaPredicted RBP22.87■■□□□ 1.25
USP42-207ENST00000521713 ARID3CA6NKF2 412 aa22.86■■□□□ 1.25
USP42-207ENST00000521713 NPM1P06748 294 aaKnown RBP eCLIP22.84■■□□□ 1.25
USP42-207ENST00000521713 NEUROD1Q13562 356 aa22.83■■□□□ 1.25
USP42-207ENST00000521713 ZNF777Q9ULD5 760 aaPredicted RBP22.76■■□□□ 1.23
USP42-207ENST00000521713 ZNF326Q5BKZ1 582 aaKnown RBP22.72■■□□□ 1.23
USP42-207ENST00000521713 CHMP7Q8WUX9 453 aaPredicted RBP22.68■■□□□ 1.22
USP42-207ENST00000521713 GTF3C3Q9Y5Q9 886 aa22.68■■□□□ 1.22
USP42-207ENST00000521713 ESF1Q9H501 851 aaKnown RBP22.66■■□□□ 1.22
USP42-207ENST00000521713 RSF1Q96T23 1441 aaPredicted RBP22.61■■□□□ 1.21
USP42-207ENST00000521713 BAZ1BQ9UIG0 1483 aaKnown RBP22.6■■□□□ 1.21
USP42-207ENST00000521713 BCANQ96GW7 911 aa22.59■■□□□ 1.21
USP42-207ENST00000521713 DCAF1Q9Y4B6 1507 aa22.55■■□□□ 1.2
USP42-207ENST00000521713 ZNF316A6NFI3 1004 aaPredicted RBP22.53■■□□□ 1.2
USP42-207ENST00000521713 ACIN1Q9UKV3 1341 aaKnown RBP22.51■■□□□ 1.19
USP42-207ENST00000521713 CLSPNQ9HAW4 1339 aa22.47■■□□□ 1.19
USP42-207ENST00000521713 ANP32CO43423 234 aa22.47■■□□□ 1.19
USP42-207ENST00000521713 EEA1Q15075 1411 aa22.44■■□□□ 1.18
USP42-207ENST00000521713 BAZ1AQ9NRL2 1556 aaPredicted RBP22.42■■□□□ 1.18
USP42-207ENST00000521713 TSPY4P0CV99 314 aa22.4■■□□□ 1.18
USP42-207ENST00000521713 TSPY10P0CW01 314 aa22.4■■□□□ 1.18
USP42-207ENST00000521713 STAG3Q9UJ98 1225 aa22.4■■□□□ 1.18
USP42-207ENST00000521713 WRNQ14191 1432 aaPredicted RBP eCLIP22.38■■□□□ 1.17
USP42-207ENST00000521713 MTUS2Q5JR59 1369 aa22.38■■□□□ 1.17
USP42-207ENST00000521713 NEFMP07197 916 aa22.34■■□□□ 1.17
USP42-207ENST00000521713 CHGAP10645 457 aaKnown RBP22.34■■□□□ 1.17
USP42-207ENST00000521713 ERCC6Q03468 1493 aa22.32■■□□□ 1.16
USP42-207ENST00000521713 CLIP1P30622 1438 aa22.32■■□□□ 1.16
USP42-207ENST00000521713 KIF27Q86VH2 1401 aa22.3■■□□□ 1.16
USP42-207ENST00000521713 TONSLQ96HA7 1378 aa22.28■■□□□ 1.16
USP42-207ENST00000521713 PLEKHD1A6NEE1 506 aa22.26■■□□□ 1.15
USP42-207ENST00000521713 CHIC2Q9UKJ5 165 aa22.25■■□□□ 1.15
USP42-207ENST00000521713 GOLGA3Q08378 1498 aa22.22■■□□□ 1.15
USP42-207ENST00000521713 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.22■■□□□ 1.15
USP42-207ENST00000521713 CECR2Q9BXF3 1484 aa22.19■■□□□ 1.14
USP42-207ENST00000521713 PLPPR3Q6T4P5 718 aa22.17■■□□□ 1.14
USP42-207ENST00000521713 KCNH8Q96L42 1107 aa22.16■■□□□ 1.14
USP42-207ENST00000521713 ZBTB47Q9UFB7 747 aaPredicted RBP22.15■■□□□ 1.14
USP42-207ENST00000521713 SLC24A1O60721 1099 aa22.12■■□□□ 1.13
USP42-207ENST00000521713 CEP164Q9UPV0 1460 aa22.08■■□□□ 1.12
USP42-207ENST00000521713 ANP32AP39687 249 aaKnown RBP22.07■■□□□ 1.12
USP42-207ENST00000521713 CANXP27824 592 aaKnown RBP22.04■■□□□ 1.12
USP42-207ENST00000521713 CEP162Q5TB80 1403 aa22.04■■□□□ 1.12
USP42-207ENST00000521713 SMARCA2P51531 1590 aa22.03■■□□□ 1.12
USP42-207ENST00000521713 MYO15BQ96JP2 1530 aa22.02■■□□□ 1.12
USP42-207ENST00000521713 TNIKQ9UKE5 1360 aa22.01■■□□□ 1.11
USP42-207ENST00000521713 PDS5BQ9NTI5 1447 aa22■■□□□ 1.11
USP42-207ENST00000521713 CFDP1Q9UEE9 299 aaPredicted RBP22■■□□□ 1.11
USP42-207ENST00000521713 GLIPR1L2Q4G1C9 344 aa21.96■■□□□ 1.11
USP42-207ENST00000521713 RRP7BPQ9NSQ0 103 aa21.95■■□□□ 1.1
USP42-207ENST00000521713 CARMIL1Q5VZK9 1371 aa21.93■■□□□ 1.1
USP42-207ENST00000521713 CUX2O14529 1486 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms