RNA–Protein interactions for RNA: ENST00000520746.1

HDAC2-208, Transcript of histone deacetylase 2, humanhuman

TSL 3

Gene HDAC2, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC2-208ENST00000520746 AEBP2Q6ZN18 517 aaPredicted RBP26.73■■□□□ 1.87
HDAC2-208ENST00000520746 CHIC1Q5VXU3 224 aa25.31■■□□□ 1.64
HDAC2-208ENST00000520746 SENP3Q9H4L4 574 aaPredicted RBP22.77■■□□□ 1.24
HDAC2-208ENST00000520746 PHF23Q9BUL5 403 aaPredicted RBP22.47■■□□□ 1.19
HDAC2-208ENST00000520746 FOXD1Q16676 465 aa21.25■□□□□ 0.99
HDAC2-208ENST00000520746 PLPPR3Q6T4P5 718 aa20.18■□□□□ 0.82
HDAC2-208ENST00000520746 MSH5O43196 834 aa19.87■□□□□ 0.77
HDAC2-208ENST00000520746 PPP6R1Q9UPN7 881 aa19.84■□□□□ 0.77
HDAC2-208ENST00000520746 PIAS4Q8N2W9 510 aaPredicted RBP19.83■□□□□ 0.77
HDAC2-208ENST00000520746 ADRA2BP18089 450 aa19.76■□□□□ 0.75
HDAC2-208ENST00000520746 POTEDQ86YR6 584 aa19.52■□□□□ 0.72
HDAC2-208ENST00000520746 MAPK8IP2Q13387 824 aaPredicted RBP18.17■□□□□ 0.5
HDAC2-208ENST00000520746 DMRT2Q9Y5R5 561 aa18.06■□□□□ 0.48
HDAC2-208ENST00000520746 SCAF1Q9H7N4 1312 aaKnown RBP18.03■□□□□ 0.48
HDAC2-208ENST00000520746 PPP4R3CPQ6ZMV5 832 aa17.69■□□□□ 0.42
HDAC2-208ENST00000520746 HOXD11P31277 338 aaPredicted RBP17.37■□□□□ 0.37
HDAC2-208ENST00000520746 CNKSR2Q8WXI2 1034 aa17.36■□□□□ 0.37
HDAC2-208ENST00000520746 DCAF8L1A6NGE4 600 aa17.3■□□□□ 0.36
HDAC2-208ENST00000520746 RNF216Q9NWF9 866 aaPredicted RBP17.22■□□□□ 0.35
HDAC2-208ENST00000520746 CACNB1Q02641 598 aaPredicted RBP17.09■□□□□ 0.33
HDAC2-208ENST00000520746 RNF39Q9H2S5 420 aa16.97■□□□□ 0.31
HDAC2-208ENST00000520746 NCBP3Q53F19 620 aaKnown RBP16.96■□□□□ 0.31
HDAC2-208ENST00000520746 DNAJC5BQ9UF47 199 aa16.77■□□□□ 0.28
HDAC2-208ENST00000520746 NPM3O75607 178 aaKnown RBP16.76■□□□□ 0.27
HDAC2-208ENST00000520746 C1QBPQ07021 282 aaKnown RBP16.7■□□□□ 0.26
HDAC2-208ENST00000520746 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.53■□□□□ 0.244e-9■□□□□ 10
HDAC2-208ENST00000520746 KCNA4P22459 653 aa16.41■□□□□ 0.22
HDAC2-208ENST00000520746 U3KPZ7 1027 aaPredicted RBP16.22■□□□□ 0.19
HDAC2-208ENST00000520746 SLC4A2P04920 1241 aa16.03■□□□□ 0.16
HDAC2-208ENST00000520746 SPINK5Q9NQ38 1064 aaPredicted RBP16■□□□□ 0.15
HDAC2-208ENST00000520746 CAPN15O75808 1086 aa15.94■□□□□ 0.14
HDAC2-208ENST00000520746 DSG3P32926 999 aa15.88■□□□□ 0.13
HDAC2-208ENST00000520746 APLP2Q06481 763 aa15.7■□□□□ 0.1
HDAC2-208ENST00000520746 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.68■□□□□ 0.1
HDAC2-208ENST00000520746 TRHP20396 242 aaPredicted RBP15.68■□□□□ 0.1
HDAC2-208ENST00000520746 HNRNPUL2Q1KMD3 747 aaKnown RBP15.68■□□□□ 0.1
HDAC2-208ENST00000520746 ZNF219Q9P2Y4 722 aaPredicted RBP15.64■□□□□ 0.09
HDAC2-208ENST00000520746 SAMD1Q6SPF0 538 aaPredicted RBP15.61■□□□□ 0.09
HDAC2-208ENST00000520746 ABCB7O75027 752 aa15.59■□□□□ 0.09
HDAC2-208ENST00000520746 MYCNP04198 464 aaPredicted RBP15.49■□□□□ 0.07
HDAC2-208ENST00000520746 SLC4A1APQ9BWU0 796 aaKnown RBP15.46■□□□□ 0.07
HDAC2-208ENST00000520746 FOXD4L1Q9NU39 408 aa15.31■□□□□ 0.04
HDAC2-208ENST00000520746 POTEHQ6S545 545 aa15.27■□□□□ 0.04
HDAC2-208ENST00000520746 POLA2Q14181 598 aa15.24■□□□□ 0.03
HDAC2-208ENST00000520746 ATF5Q9Y2D1 282 aaPredicted RBP15.17■□□□□ 0.02
HDAC2-208ENST00000520746 RBM42Q9BTD8 480 aaKnown RBP15.13■□□□□ 0.01
HDAC2-208ENST00000520746 ZBTB22O15209 634 aa15.1■□□□□ 0.01
HDAC2-208ENST00000520746 ZBTB12Q9Y330 459 aaPredicted RBP14.91□□□□□ -0.02
HDAC2-208ENST00000520746 CHRDL2Q6WN34 429 aa14.83□□□□□ -0.04
HDAC2-208ENST00000520746 ATXN8OSP0DMR3 200 aa14.82□□□□□ -0.04
HDAC2-208ENST00000520746 OSCARQ8IYS5 282 aa14.79□□□□□ -0.04
HDAC2-208ENST00000520746 AKT1S1Q96B36 256 aa14.78□□□□□ -0.04
HDAC2-208ENST00000520746 REM2Q8IYK8 340 aaPredicted RBP14.65□□□□□ -0.06
HDAC2-208ENST00000520746 FBLN2P98095 1184 aa14.53□□□□□ -0.08
HDAC2-208ENST00000520746 PITPNM1O00562 1244 aa14.51□□□□□ -0.09
HDAC2-208ENST00000520746 PIP4P2Q8N4L2 257 aa14.48□□□□□ -0.09
HDAC2-208ENST00000520746 MKRN4PQ13434 485 aaPredicted RBP14.47□□□□□ -0.09
HDAC2-208ENST00000520746 SPDYE2BA6NHP3 402 aa14.46□□□□□ -0.09
HDAC2-208ENST00000520746 SPDYE6P0CI01 402 aa14.46□□□□□ -0.09
HDAC2-208ENST00000520746 SPDYE2Q495Y8 402 aa14.46□□□□□ -0.09
HDAC2-208ENST00000520746 FXR2P51116 673 aaKnown RBP eCLIP14.38□□□□□ -0.112e-6■■■■□ 24.2
HDAC2-208ENST00000520746 CSRNP3Q8WYN3 585 aa14.34□□□□□ -0.11
HDAC2-208ENST00000520746 SP7Q8TDD2 431 aaPredicted RBP14.29□□□□□ -0.12
HDAC2-208ENST00000520746 SSUH2Q9Y2M2 353 aa14.29□□□□□ -0.12
HDAC2-208ENST00000520746 ZNF692Q9BU19 519 aaPredicted RBP14.28□□□□□ -0.12
HDAC2-208ENST00000520746 SPDYE1Q8NFV5 336 aaPredicted RBP14.22□□□□□ -0.13
HDAC2-208ENST00000520746 HAX1O00165 279 aa14.21□□□□□ -0.13
HDAC2-208ENST00000520746 CLEC11AQ9Y240 323 aa14.2□□□□□ -0.14
HDAC2-208ENST00000520746 PRKAR2AP13861 404 aaKnown RBP14.12□□□□□ -0.15
HDAC2-208ENST00000520746 EHMT2Q96KQ7 1210 aa14.12□□□□□ -0.15
HDAC2-208ENST00000520746 PABPN1Q86U42 306 aaKnown RBP eCLIP14.08□□□□□ -0.16
HDAC2-208ENST00000520746 EVX2Q03828 476 aa14.07□□□□□ -0.16
HDAC2-208ENST00000520746 CHADLQ6NUI6 762 aa13.97□□□□□ -0.17
HDAC2-208ENST00000520746 PRR29P0C7W0 189 aa13.95□□□□□ -0.18
HDAC2-208ENST00000520746 C19orf67A6NJJ6 358 aa13.92□□□□□ -0.18
HDAC2-208ENST00000520746 FARP1Q9Y4F1 1045 aaPredicted RBP13.74□□□□□ -0.21
HDAC2-208ENST00000520746 SPDYE4A6NLX3 237 aa13.73□□□□□ -0.21
HDAC2-208ENST00000520746 GABBR2O75899 941 aa13.73□□□□□ -0.21
HDAC2-208ENST00000520746 CD44P16070 742 aaKnown RBP13.67□□□□□ -0.22
HDAC2-208ENST00000520746 STAG3Q9UJ98 1225 aa13.65□□□□□ -0.22
HDAC2-208ENST00000520746 CREBZFQ9NS37 354 aa13.63□□□□□ -0.23
HDAC2-208ENST00000520746 POTEIP0CG38 1075 aa13.47□□□□□ -0.25
HDAC2-208ENST00000520746 ZNF579Q8NAF0 562 aaKnown RBP13.47□□□□□ -0.25
HDAC2-208ENST00000520746 ZRANB1Q9UGI0 708 aa13.46□□□□□ -0.25
HDAC2-208ENST00000520746 CLCN6P51797 869 aa13.45□□□□□ -0.26
HDAC2-208ENST00000520746 PROM2Q8N271 834 aa13.41□□□□□ -0.26
HDAC2-208ENST00000520746 MNX1P50219 401 aaPredicted RBP13.4□□□□□ -0.26
HDAC2-208ENST00000520746 LHX8Q68G74 356 aa13.4□□□□□ -0.26
HDAC2-208ENST00000520746 NPM1P06748 294 aaKnown RBP eCLIP13.34□□□□□ -0.27
HDAC2-208ENST00000520746 PAK3O75914 559 aaPredicted RBP13.32□□□□□ -0.28
HDAC2-208ENST00000520746 DCBLD2Q96PD2 775 aa13.32□□□□□ -0.28
HDAC2-208ENST00000520746 GALR2O43603 387 aaPredicted RBP13.31□□□□□ -0.28
HDAC2-208ENST00000520746 PHF12Q96QT6 1004 aa13.3□□□□□ -0.28
HDAC2-208ENST00000520746 MS4A3Q96HJ5 214 aa13.12□□□□□ -0.31
HDAC2-208ENST00000520746 TSPYL2Q9H2G4 693 aaPredicted RBP13.12□□□□□ -0.31
HDAC2-208ENST00000520746 MIER1Q8N108 512 aa13.08□□□□□ -0.32
HDAC2-208ENST00000520746 CCDC61Q9Y6R9 512 aa13.08□□□□□ -0.32
HDAC2-208ENST00000520746 PELP1Q8IZL8 1130 aaKnown RBP13.07□□□□□ -0.32
HDAC2-208ENST00000520746 PLEKHG5O94827 1062 aa13.05□□□□□ -0.32
HDAC2-208ENST00000520746 POTEB2H3BUK9 544 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms