RNA–Protein interactions for RNA: ENST00000519661.5

SPIDR-212, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 2

Gene SPIDR, Length 1,035 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-212ENST00000519661 NISCHQ9Y2I1 1504 aa28.28■■■□□ 2.12
SPIDR-212ENST00000519661 CCDC180Q9P1Z9 1646 aa25.15■■□□□ 1.62
SPIDR-212ENST00000519661 ABCC9O60706 1549 aa24.35■■□□□ 1.49
SPIDR-212ENST00000519661 MYO15BQ96JP2 1530 aa23.69■■□□□ 1.38
SPIDR-212ENST00000519661 NACADO15069 1562 aa23.65■■□□□ 1.38
SPIDR-212ENST00000519661 ZCCHC6Q5VYS8 1495 aaKnown RBP23.61■■□□□ 1.37
SPIDR-212ENST00000519661 RB1CC1Q8TDY2 1594 aa23.59■■□□□ 1.37
SPIDR-212ENST00000519661 DCAF1Q9Y4B6 1507 aa23.56■■□□□ 1.36
SPIDR-212ENST00000519661 DCAF8L2P0C7V8 631 aa23.21■■□□□ 1.31
SPIDR-212ENST00000519661 UNC13AQ9UPW8 1703 aa22.96■■□□□ 1.27
SPIDR-212ENST00000519661 BICRAQ9NZM4 1560 aa22.92■■□□□ 1.26
SPIDR-212ENST00000519661 SHROOM4Q9ULL8 1493 aa22.86■■□□□ 1.25
SPIDR-212ENST00000519661 SCRIBQ14160 1630 aa22.75■■□□□ 1.23
SPIDR-212ENST00000519661 PABPN1Q86U42 306 aaKnown RBP eCLIP22.7■■□□□ 1.22
SPIDR-212ENST00000519661 DNAJC5BQ9UF47 199 aa22.37■■□□□ 1.17
SPIDR-212ENST00000519661 EIF4G1Q04637 1599 aaKnown RBP22.27■■□□□ 1.16
SPIDR-212ENST00000519661 CC2D2AQ9P2K1 1620 aa22.11■■□□□ 1.13
SPIDR-212ENST00000519661 CECR2Q9BXF3 1484 aa21.96■■□□□ 1.11
SPIDR-212ENST00000519661 BAZ1AQ9NRL2 1556 aaPredicted RBP21.91■■□□□ 1.1
SPIDR-212ENST00000519661 SMARCA4P51532 1647 aa21.89■■□□□ 1.09
SPIDR-212ENST00000519661 NCAPD3P42695 1498 aa21.86■■□□□ 1.09
SPIDR-212ENST00000519661 PEG3Q9GZU2 1588 aa21.84■■□□□ 1.09
SPIDR-212ENST00000519661 ATAD2BQ9ULI0 1458 aa21.8■■□□□ 1.08
SPIDR-212ENST00000519661 SMARCA2P51531 1590 aa21.78■■□□□ 1.08
SPIDR-212ENST00000519661 HMGXB3Q12766 1538 aa21.74■■□□□ 1.07
SPIDR-212ENST00000519661 MROH2BQ7Z745 1585 aa21.73■■□□□ 1.07
SPIDR-212ENST00000519661 BAZ1BQ9UIG0 1483 aaKnown RBP21.55■■□□□ 1.04
SPIDR-212ENST00000519661 RSF1Q96T23 1441 aaPredicted RBP21.55■■□□□ 1.04
SPIDR-212ENST00000519661 WIZO95785 1651 aa21.42■■□□□ 1.02
SPIDR-212ENST00000519661 TOP2AP11388 1531 aaKnown RBP21.32■■□□□ 1
SPIDR-212ENST00000519661 LAMC3Q9Y6N6 1575 aa21.21■□□□□ 0.99
SPIDR-212ENST00000519661 CADPSQ9ULU8 1353 aa21.14■□□□□ 0.98
SPIDR-212ENST00000519661 NESP48681 1621 aa21.11■□□□□ 0.97
SPIDR-212ENST00000519661 CFTRP13569 1480 aa21.07■□□□□ 0.96
SPIDR-212ENST00000519661 PDS5BQ9NTI5 1447 aa21.03■□□□□ 0.96
SPIDR-212ENST00000519661 CCDC88BA6NC98 1476 aa21.01■□□□□ 0.95
SPIDR-212ENST00000519661 ERCC6Q03468 1493 aa20.98■□□□□ 0.95
SPIDR-212ENST00000519661 CUX2O14529 1486 aa20.94■□□□□ 0.94
SPIDR-212ENST00000519661 THOC2Q8NI27 1593 aaKnown RBP20.89■□□□□ 0.94
SPIDR-212ENST00000519661 KIF21AQ7Z4S6 1674 aa20.86■□□□□ 0.93
SPIDR-212ENST00000519661 FANCD2Q9BXW9 1451 aa20.85■□□□□ 0.93
SPIDR-212ENST00000519661 CEP164Q9UPV0 1460 aa20.81■□□□□ 0.92
SPIDR-212ENST00000519661 PRDM2Q13029 1718 aa20.81■□□□□ 0.92
SPIDR-212ENST00000519661 MRC2Q9UBG0 1479 aa20.81■□□□□ 0.92
SPIDR-212ENST00000519661 WDR62O43379 1518 aa20.79■□□□□ 0.92
SPIDR-212ENST00000519661 SUPT5HO00267 1087 aaKnown RBP20.72■□□□□ 0.91
SPIDR-212ENST00000519661 URB2Q14146 1524 aaKnown RBP20.65■□□□□ 0.9
SPIDR-212ENST00000519661 ABCC8Q09428 1581 aa20.61■□□□□ 0.89
SPIDR-212ENST00000519661 TOPBP1Q92547 1522 aa20.53■□□□□ 0.88
SPIDR-212ENST00000519661 DNMBPQ6XZF7 1577 aa20.53■□□□□ 0.88
SPIDR-212ENST00000519661 IFT140Q96RY7 1462 aa20.43■□□□□ 0.86
SPIDR-212ENST00000519661 CUX1P39880 1505 aa20.39■□□□□ 0.85
SPIDR-212ENST00000519661 POLA1P09884 1462 aaPredicted RBP20.37■□□□□ 0.85
SPIDR-212ENST00000519661 TARBP1Q13395 1621 aaKnown RBP20.35■□□□□ 0.85
SPIDR-212ENST00000519661 WDR97A6NE52 1622 aa20.29■□□□□ 0.84
SPIDR-212ENST00000519661 FGD5Q6ZNL6 1462 aa20.29■□□□□ 0.84
SPIDR-212ENST00000519661 WRNQ14191 1432 aaPredicted RBP eCLIP20.27■□□□□ 0.83
SPIDR-212ENST00000519661 TOP2BQ02880 1626 aa20.26■□□□□ 0.83
SPIDR-212ENST00000519661 BIVM-ERCC5R4GMW8 1640 aa20.25■□□□□ 0.83
SPIDR-212ENST00000519661 ZNF608Q9ULD9 1512 aaPredicted RBP20.25■□□□□ 0.83
SPIDR-212ENST00000519661 SOGA1O94964 1423 aa20.24■□□□□ 0.83
SPIDR-212ENST00000519661 RAD54L2Q9Y4B4 1467 aa20.19■□□□□ 0.82
SPIDR-212ENST00000519661 SYNJ1O43426 1573 aa20.19■□□□□ 0.82
SPIDR-212ENST00000519661 EIF4G3O43432 1585 aaKnown RBP20.19■□□□□ 0.82
SPIDR-212ENST00000519661 ABCA10Q8WWZ4 1543 aa20.18■□□□□ 0.82
SPIDR-212ENST00000519661 DNAJC5Q9H3Z4 198 aa20.18■□□□□ 0.82
SPIDR-212ENST00000519661 AQRO60306 1485 aaKnown RBP eCLIP20.11■□□□□ 0.81
SPIDR-212ENST00000519661 ABCA5Q8WWZ7 1642 aa20.08■□□□□ 0.8
SPIDR-212ENST00000519661 TDRD9Q8NDG6 1382 aaKnown RBP20.08■□□□□ 0.8
SPIDR-212ENST00000519661 GRIN2BQ13224 1484 aa20.05■□□□□ 0.8
SPIDR-212ENST00000519661 MAGI1Q96QZ7 1491 aaPredicted RBP20.04■□□□□ 0.8
SPIDR-212ENST00000519661 GAPVD1Q14C86 1478 aa20.03■□□□□ 0.8
SPIDR-212ENST00000519661 SNAPC4Q5SXM2 1469 aa19.95■□□□□ 0.78
SPIDR-212ENST00000519661 OSCARQ8IYS5 282 aa19.95■□□□□ 0.78
SPIDR-212ENST00000519661 ERICH3Q5RHP9 1530 aa19.95■□□□□ 0.78
SPIDR-212ENST00000519661 SYNJ2O15056 1496 aa19.93■□□□□ 0.78
SPIDR-212ENST00000519661 PBRM1Q86U86 1689 aa19.92■□□□□ 0.78
SPIDR-212ENST00000519661 ADAMTS12P58397 1594 aa19.86■□□□□ 0.77
SPIDR-212ENST00000519661 CHD1O14646 1710 aa19.85■□□□□ 0.77
SPIDR-212ENST00000519661 KIF27Q86VH2 1401 aa19.85■□□□□ 0.77
SPIDR-212ENST00000519661 FHAD1B1AJZ9 1412 aa19.84■□□□□ 0.77
SPIDR-212ENST00000519661 CLASP1Q7Z460 1538 aa19.81■□□□□ 0.76
SPIDR-212ENST00000519661 GRIN2AQ12879 1464 aa19.79■□□□□ 0.76
SPIDR-212ENST00000519661 IGF1RP08069 1367 aa19.79■□□□□ 0.76
SPIDR-212ENST00000519661 NUP160Q12769 1436 aa19.77■□□□□ 0.76
SPIDR-212ENST00000519661 CHMP7Q8WUX9 453 aaPredicted RBP19.77■□□□□ 0.76
SPIDR-212ENST00000519661 CUL7Q14999 1698 aa19.72■□□□□ 0.75
SPIDR-212ENST00000519661 FBLN2P98095 1184 aa19.69■□□□□ 0.74
SPIDR-212ENST00000519661 ARHGEF11O15085 1522 aa19.67■□□□□ 0.74
SPIDR-212ENST00000519661 TRIM41Q8WV44 630 aa19.67■□□□□ 0.74
SPIDR-212ENST00000519661 CEP170Q5SW79 1584 aa19.66■□□□□ 0.74
SPIDR-212ENST00000519661 RIMBP3CA6NJZ7 1639 aa19.62■□□□□ 0.73
SPIDR-212ENST00000519661 RIMBP3BA6NNM3 1639 aa19.62■□□□□ 0.73
SPIDR-212ENST00000519661 RIMBP3Q9UFD9 1639 aa19.62■□□□□ 0.73
SPIDR-212ENST00000519661 CARMIL1Q5VZK9 1371 aa19.61■□□□□ 0.73
SPIDR-212ENST00000519661 SHROOM2Q13796 1616 aa19.61■□□□□ 0.73
SPIDR-212ENST00000519661 RUSC2Q8N2Y8 1516 aa19.59■□□□□ 0.73
SPIDR-212ENST00000519661 EEA1Q15075 1411 aa19.57■□□□□ 0.72
SPIDR-212ENST00000519661 PRXQ9BXM0 1461 aa19.56■□□□□ 0.72
SPIDR-212ENST00000519661 KIAA0586Q9BVV6 1533 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms