RNA–Protein interactions for RNA: ENST00000515815.5

SDHA-219, Transcript of succinate dehydrogenase complex flavoprotein subunit A, humanhuman

TSL 3

Gene SDHA, Length 704 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDHA-219ENST00000515815 NISCHQ9Y2I1 1504 aa30.01■■■□□ 2.39
SDHA-219ENST00000515815 CCDC180Q9P1Z9 1646 aa27.12■■□□□ 1.93
SDHA-219ENST00000515815 ABCC9O60706 1549 aa26.44■■□□□ 1.82
SDHA-219ENST00000515815 RB1CC1Q8TDY2 1594 aa25.49■■□□□ 1.67
SDHA-219ENST00000515815 NACADO15069 1562 aa25.35■■□□□ 1.65
SDHA-219ENST00000515815 UNC13AQ9UPW8 1703 aa25.16■■□□□ 1.62
SDHA-219ENST00000515815 MYO15BQ96JP2 1530 aa25.07■■□□□ 1.6
SDHA-219ENST00000515815 ZCCHC6Q5VYS8 1495 aaKnown RBP25.02■■□□□ 1.6
SDHA-219ENST00000515815 DCAF1Q9Y4B6 1507 aa24.87■■□□□ 1.57
SDHA-219ENST00000515815 DCAF8L2P0C7V8 631 aa24.84■■□□□ 1.57
SDHA-219ENST00000515815 BICRAQ9NZM4 1560 aa24.67■■□□□ 1.54
SDHA-219ENST00000515815 SCRIBQ14160 1630 aa24.59■■□□□ 1.53
SDHA-219ENST00000515815 SHROOM4Q9ULL8 1493 aa24.46■■□□□ 1.51
SDHA-219ENST00000515815 PABPN1Q86U42 306 aaKnown RBP eCLIP24.43■■□□□ 1.5
SDHA-219ENST00000515815 DNAJC5BQ9UF47 199 aa24.2■■□□□ 1.46
SDHA-219ENST00000515815 EIF4G1Q04637 1599 aaKnown RBP24.07■■□□□ 1.44
SDHA-219ENST00000515815 CC2D2AQ9P2K1 1620 aa24.05■■□□□ 1.44
SDHA-219ENST00000515815 CECR2Q9BXF3 1484 aa23.8■■□□□ 1.4
SDHA-219ENST00000515815 SMARCA4P51532 1647 aa23.49■■□□□ 1.35
SDHA-219ENST00000515815 BAZ1AQ9NRL2 1556 aaPredicted RBP23.38■■□□□ 1.33
SDHA-219ENST00000515815 SMARCA2P51531 1590 aa23.34■■□□□ 1.33
SDHA-219ENST00000515815 HMGXB3Q12766 1538 aa23.31■■□□□ 1.32
SDHA-219ENST00000515815 PEG3Q9GZU2 1588 aa23.23■■□□□ 1.31
SDHA-219ENST00000515815 ATAD2BQ9ULI0 1458 aa23.23■■□□□ 1.31
SDHA-219ENST00000515815 NCAPD3P42695 1498 aa23.22■■□□□ 1.31
SDHA-219ENST00000515815 BAZ1BQ9UIG0 1483 aaKnown RBP23.11■■□□□ 1.29
SDHA-219ENST00000515815 MROH2BQ7Z745 1585 aa23.1■■□□□ 1.29
SDHA-219ENST00000515815 WIZO95785 1651 aa22.98■■□□□ 1.27
SDHA-219ENST00000515815 ERCC6Q03468 1493 aa22.87■■□□□ 1.25
SDHA-219ENST00000515815 LAMC3Q9Y6N6 1575 aa22.87■■□□□ 1.25
SDHA-219ENST00000515815 KIF21AQ7Z4S6 1674 aa22.83■■□□□ 1.24
SDHA-219ENST00000515815 NESP48681 1621 aa22.8■■□□□ 1.24
SDHA-219ENST00000515815 THOC2Q8NI27 1593 aaKnown RBP22.76■■□□□ 1.23
SDHA-219ENST00000515815 CUX2O14529 1486 aa22.75■■□□□ 1.23
SDHA-219ENST00000515815 TOP2AP11388 1531 aaKnown RBP22.72■■□□□ 1.23
SDHA-219ENST00000515815 PRDM2Q13029 1718 aa22.71■■□□□ 1.23
SDHA-219ENST00000515815 RSF1Q96T23 1441 aaPredicted RBP22.63■■□□□ 1.21
SDHA-219ENST00000515815 PDS5BQ9NTI5 1447 aa22.53■■□□□ 1.2
SDHA-219ENST00000515815 CADPSQ9ULU8 1353 aa22.48■■□□□ 1.19
SDHA-219ENST00000515815 WDR62O43379 1518 aa22.43■■□□□ 1.18
SDHA-219ENST00000515815 MRC2Q9UBG0 1479 aa22.42■■□□□ 1.18
SDHA-219ENST00000515815 CEP164Q9UPV0 1460 aa22.42■■□□□ 1.18
SDHA-219ENST00000515815 CFTRP13569 1480 aa22.37■■□□□ 1.17
SDHA-219ENST00000515815 FANCD2Q9BXW9 1451 aa22.34■■□□□ 1.17
SDHA-219ENST00000515815 CCDC88BA6NC98 1476 aa22.25■■□□□ 1.15
SDHA-219ENST00000515815 URB2Q14146 1524 aaKnown RBP22.16■■□□□ 1.14
SDHA-219ENST00000515815 DNMBPQ6XZF7 1577 aa22.04■■□□□ 1.12
SDHA-219ENST00000515815 DNAJC5Q9H3Z4 198 aa22.04■■□□□ 1.12
SDHA-219ENST00000515815 TOPBP1Q92547 1522 aa21.99■■□□□ 1.11
SDHA-219ENST00000515815 ABCC8Q09428 1581 aa21.95■■□□□ 1.11
SDHA-219ENST00000515815 EIF4G3O43432 1585 aaKnown RBP21.95■■□□□ 1.1
SDHA-219ENST00000515815 IFT140Q96RY7 1462 aa21.9■■□□□ 1.1
SDHA-219ENST00000515815 TARBP1Q13395 1621 aaKnown RBP21.86■■□□□ 1.09
SDHA-219ENST00000515815 WDR97A6NE52 1622 aa21.82■■□□□ 1.08
SDHA-219ENST00000515815 CHD1O14646 1710 aa21.8■■□□□ 1.08
SDHA-219ENST00000515815 ZNF608Q9ULD9 1512 aaPredicted RBP21.78■■□□□ 1.08
SDHA-219ENST00000515815 POLA1P09884 1462 aaPredicted RBP21.77■■□□□ 1.08
SDHA-219ENST00000515815 CUX1P39880 1505 aa21.73■■□□□ 1.07
SDHA-219ENST00000515815 PBRM1Q86U86 1689 aa21.72■■□□□ 1.07
SDHA-219ENST00000515815 SUPT5HO00267 1087 aaKnown RBP21.71■■□□□ 1.07
SDHA-219ENST00000515815 FGD5Q6ZNL6 1462 aa21.71■■□□□ 1.07
SDHA-219ENST00000515815 BIVM-ERCC5R4GMW8 1640 aa21.66■■□□□ 1.06
SDHA-219ENST00000515815 RAD54L2Q9Y4B4 1467 aa21.6■■□□□ 1.05
SDHA-219ENST00000515815 ABCA5Q8WWZ7 1642 aa21.58■■□□□ 1.05
SDHA-219ENST00000515815 TOP2BQ02880 1626 aa21.57■■□□□ 1.04
SDHA-219ENST00000515815 SOGA1O94964 1423 aa21.55■■□□□ 1.04
SDHA-219ENST00000515815 SYNJ1O43426 1573 aa21.54■■□□□ 1.04
SDHA-219ENST00000515815 AQRO60306 1485 aaKnown RBP eCLIP21.54■■□□□ 1.042e-6■■□□□ 13.8
SDHA-219ENST00000515815 RIMBP3CA6NJZ7 1639 aa21.54■■□□□ 1.04
SDHA-219ENST00000515815 RIMBP3BA6NNM3 1639 aa21.54■■□□□ 1.04
SDHA-219ENST00000515815 RIMBP3Q9UFD9 1639 aa21.54■■□□□ 1.04
SDHA-219ENST00000515815 SNAPC4Q5SXM2 1469 aa21.5■■□□□ 1.03
SDHA-219ENST00000515815 MAGI1Q96QZ7 1491 aaPredicted RBP21.47■■□□□ 1.03
SDHA-219ENST00000515815 ABCA10Q8WWZ4 1543 aa21.46■■□□□ 1.03
SDHA-219ENST00000515815 OSCARQ8IYS5 282 aa21.45■■□□□ 1.02
SDHA-219ENST00000515815 GRIN2BQ13224 1484 aa21.44■■□□□ 1.02
SDHA-219ENST00000515815 WRNQ14191 1432 aaPredicted RBP eCLIP21.42■■□□□ 1.02
SDHA-219ENST00000515815 ARHGEF11O15085 1522 aa21.41■■□□□ 1.02
SDHA-219ENST00000515815 TDRD9Q8NDG6 1382 aaKnown RBP21.41■■□□□ 1.02
SDHA-219ENST00000515815 ADAMTS12P58397 1594 aa21.4■■□□□ 1.02
SDHA-219ENST00000515815 GAPVD1Q14C86 1478 aa21.39■■□□□ 1.01
SDHA-219ENST00000515815 CLASP1Q7Z460 1538 aa21.38■■□□□ 1.01
SDHA-219ENST00000515815 SYNJ2O15056 1496 aa21.36■■□□□ 1.01
SDHA-219ENST00000515815 TRIM41Q8WV44 630 aa21.27■■□□□ 1
SDHA-219ENST00000515815 ERICH3Q5RHP9 1530 aa21.26■□□□□ 0.99
SDHA-219ENST00000515815 FBLN2P98095 1184 aa21.25■□□□□ 0.99
SDHA-219ENST00000515815 GRIN2AQ12879 1464 aa21.21■□□□□ 0.99
SDHA-219ENST00000515815 ARAP1Q96P48 1450 aa21.2■□□□□ 0.98
SDHA-219ENST00000515815 CEP170Q5SW79 1584 aa21.19■□□□□ 0.98
SDHA-219ENST00000515815 CUL7Q14999 1698 aa21.18■□□□□ 0.98
SDHA-219ENST00000515815 CHMP7Q8WUX9 453 aaPredicted RBP21.15■□□□□ 0.98
SDHA-219ENST00000515815 SHROOM2Q13796 1616 aa21.14■□□□□ 0.97
SDHA-219ENST00000515815 RUSC2Q8N2Y8 1516 aa21.12■□□□□ 0.97
SDHA-219ENST00000515815 FHAD1B1AJZ9 1412 aa21.11■□□□□ 0.97
SDHA-219ENST00000515815 NUP160Q12769 1436 aa21.07■□□□□ 0.96
SDHA-219ENST00000515815 ERCC6L2Q5T890 1561 aa20.99■□□□□ 0.95
SDHA-219ENST00000515815 KIF27Q86VH2 1401 aa20.98■□□□□ 0.95
SDHA-219ENST00000515815 CYB5RLQ6IPT4 315 aa20.92■□□□□ 0.94
SDHA-219ENST00000515815 CTTNBP2Q8WZ74 1663 aa20.88■□□□□ 0.93
SDHA-219ENST00000515815 IQGAP2Q13576 1575 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms