RNA–Protein interactions for RNA: ENST00000514822.1

PHF3-211, Transcript of PHD finger protein 3, humanhuman

TSL 4

Gene PHF3, Length 486 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-211ENST00000514822 AEBP2Q6ZN18 517 aaPredicted RBP26.98■■□□□ 1.91
PHF3-211ENST00000514822 CHIC1Q5VXU3 224 aa26.25■■□□□ 1.79
PHF3-211ENST00000514822 PHF23Q9BUL5 403 aaPredicted RBP23.03■■□□□ 1.28
PHF3-211ENST00000514822 SENP3Q9H4L4 574 aaPredicted RBP22.98■■□□□ 1.27
PHF3-211ENST00000514822 FOXD1Q16676 465 aa21.31■■□□□ 1
PHF3-211ENST00000514822 PLPPR3Q6T4P5 718 aa21.27■■□□□ 1
PHF3-211ENST00000514822 PPP6R1Q9UPN7 881 aa20.36■□□□□ 0.85
PHF3-211ENST00000514822 ADRA2BP18089 450 aa20.35■□□□□ 0.85
PHF3-211ENST00000514822 PIAS4Q8N2W9 510 aaPredicted RBP20.09■□□□□ 0.81
PHF3-211ENST00000514822 MSH5O43196 834 aa19.77■□□□□ 0.76
PHF3-211ENST00000514822 PPP4R3CPQ6ZMV5 832 aa18.71■□□□□ 0.59
PHF3-211ENST00000514822 SCAF1Q9H7N4 1312 aaKnown RBP18.7■□□□□ 0.58
PHF3-211ENST00000514822 MAPK8IP2Q13387 824 aaPredicted RBP18.49■□□□□ 0.55
PHF3-211ENST00000514822 DMRT2Q9Y5R5 561 aa18.31■□□□□ 0.52
PHF3-211ENST00000514822 CNKSR2Q8WXI2 1034 aa18.24■□□□□ 0.51
PHF3-211ENST00000514822 NCBP3Q53F19 620 aaKnown RBP18.22■□□□□ 0.51
PHF3-211ENST00000514822 POTEDQ86YR6 584 aa18.22■□□□□ 0.51
PHF3-211ENST00000514822 KCNA4P22459 653 aa18.09■□□□□ 0.49
PHF3-211ENST00000514822 RNF216Q9NWF9 866 aaPredicted RBP17.91■□□□□ 0.46
PHF3-211ENST00000514822 NPM3O75607 178 aaKnown RBP17.9■□□□□ 0.46
PHF3-211ENST00000514822 HOXD11P31277 338 aaPredicted RBP17.87■□□□□ 0.45
PHF3-211ENST00000514822 DCAF8L1A6NGE4 600 aa17.54■□□□□ 0.4
PHF3-211ENST00000514822 DNAJC5BQ9UF47 199 aa17.41■□□□□ 0.38
PHF3-211ENST00000514822 SLC4A1APQ9BWU0 796 aaKnown RBP17.22■□□□□ 0.35
PHF3-211ENST00000514822 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.05■□□□□ 0.32
PHF3-211ENST00000514822 SLC4A2P04920 1241 aa16.92■□□□□ 0.3
PHF3-211ENST00000514822 RNF39Q9H2S5 420 aa16.88■□□□□ 0.29
PHF3-211ENST00000514822 U3KPZ7 1027 aaPredicted RBP16.73■□□□□ 0.27
PHF3-211ENST00000514822 FOXD4L1Q9NU39 408 aa16.72■□□□□ 0.27
PHF3-211ENST00000514822 C1QBPQ07021 282 aaKnown RBP16.7■□□□□ 0.26
PHF3-211ENST00000514822 ZBTB22O15209 634 aa16.6■□□□□ 0.25
PHF3-211ENST00000514822 MYCNP04198 464 aaPredicted RBP16.58■□□□□ 0.24
PHF3-211ENST00000514822 CACNB1Q02641 598 aaPredicted RBP16.58■□□□□ 0.24
PHF3-211ENST00000514822 EHMT2Q96KQ7 1210 aa16.54■□□□□ 0.24
PHF3-211ENST00000514822 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.52■□□□□ 0.24
PHF3-211ENST00000514822 HNRNPUL2Q1KMD3 747 aaKnown RBP16.52■□□□□ 0.24
PHF3-211ENST00000514822 SAMD1Q6SPF0 538 aaPredicted RBP16.44■□□□□ 0.22
PHF3-211ENST00000514822 APLP2Q06481 763 aa16.41■□□□□ 0.22
PHF3-211ENST00000514822 CSRNP3Q8WYN3 585 aa16.41■□□□□ 0.22
PHF3-211ENST00000514822 SPINK5Q9NQ38 1064 aaPredicted RBP16.29■□□□□ 0.2
PHF3-211ENST00000514822 CAPN15O75808 1086 aa16.28■□□□□ 0.2
PHF3-211ENST00000514822 ZNF219Q9P2Y4 722 aaPredicted RBP16.17■□□□□ 0.18
PHF3-211ENST00000514822 ATXN8OSP0DMR3 200 aa16.16■□□□□ 0.18
PHF3-211ENST00000514822 TRHP20396 242 aaPredicted RBP16.16■□□□□ 0.18
PHF3-211ENST00000514822 ATF5Q9Y2D1 282 aaPredicted RBP16.08■□□□□ 0.16
PHF3-211ENST00000514822 DSG3P32926 999 aa16.01■□□□□ 0.15
PHF3-211ENST00000514822 ABCB7O75027 752 aa15.93■□□□□ 0.14
PHF3-211ENST00000514822 POLA2Q14181 598 aa15.86■□□□□ 0.13
PHF3-211ENST00000514822 ZBTB12Q9Y330 459 aaPredicted RBP15.62■□□□□ 0.09
PHF3-211ENST00000514822 FBLN2P98095 1184 aa15.5■□□□□ 0.07
PHF3-211ENST00000514822 MKRN4PQ13434 485 aaPredicted RBP15.38■□□□□ 0.05
PHF3-211ENST00000514822 RBM42Q9BTD8 480 aaKnown RBP15.32■□□□□ 0.04
PHF3-211ENST00000514822 OSCARQ8IYS5 282 aa15.31■□□□□ 0.04
PHF3-211ENST00000514822 SPDYE2BA6NHP3 402 aa15.17■□□□□ 0.02
PHF3-211ENST00000514822 SPDYE6P0CI01 402 aa15.17■□□□□ 0.02
PHF3-211ENST00000514822 SPDYE2Q495Y8 402 aa15.17■□□□□ 0.02
PHF3-211ENST00000514822 AKT1S1Q96B36 256 aa15.08■□□□□ 0
PHF3-211ENST00000514822 ZNF692Q9BU19 519 aaPredicted RBP15.08■□□□□ 0
PHF3-211ENST00000514822 SPDYE4A6NLX3 237 aa15.01□□□□□ -0.01
PHF3-211ENST00000514822 SSUH2Q9Y2M2 353 aa15.01□□□□□ -0.01
PHF3-211ENST00000514822 REM2Q8IYK8 340 aaPredicted RBP14.9□□□□□ -0.02
PHF3-211ENST00000514822 FKBP8Q14318 412 aa14.88□□□□□ -0.03
PHF3-211ENST00000514822 PABPN1Q86U42 306 aaKnown RBP eCLIP14.87□□□□□ -0.03
PHF3-211ENST00000514822 SPDYE1Q8NFV5 336 aaPredicted RBP14.77□□□□□ -0.05
PHF3-211ENST00000514822 PITPNM1O00562 1244 aa14.73□□□□□ -0.05
PHF3-211ENST00000514822 PROM2Q8N271 834 aa14.71□□□□□ -0.05
PHF3-211ENST00000514822 CHRDL2Q6WN34 429 aa14.7□□□□□ -0.06
PHF3-211ENST00000514822 CLEC11AQ9Y240 323 aa14.7□□□□□ -0.06
PHF3-211ENST00000514822 STAG3Q9UJ98 1225 aa14.63□□□□□ -0.07
PHF3-211ENST00000514822 PRR29P0C7W0 189 aa14.55□□□□□ -0.08
PHF3-211ENST00000514822 FXR2P51116 673 aaKnown RBP eCLIP14.49□□□□□ -0.092e-6■■□□□ 11.9
PHF3-211ENST00000514822 PIP4P2Q8N4L2 257 aa14.47□□□□□ -0.09
PHF3-211ENST00000514822 FBXO3Q9UK99 471 aa14.43□□□□□ -0.1
PHF3-211ENST00000514822 POTEHQ6S545 545 aa14.41□□□□□ -0.1
PHF3-211ENST00000514822 PRKAR2AP13861 404 aaKnown RBP14.38□□□□□ -0.11
PHF3-211ENST00000514822 CHADLQ6NUI6 762 aa14.33□□□□□ -0.12
PHF3-211ENST00000514822 CREBZFQ9NS37 354 aa14.29□□□□□ -0.12
PHF3-211ENST00000514822 MIER1Q8N108 512 aa14.26□□□□□ -0.13
PHF3-211ENST00000514822 PLEKHG5O94827 1062 aa14.25□□□□□ -0.13
PHF3-211ENST00000514822 PLCD3Q8N3E9 789 aa14.23□□□□□ -0.13
PHF3-211ENST00000514822 VASPP50552 380 aaPredicted RBP14.2□□□□□ -0.14
PHF3-211ENST00000514822 FARP1Q9Y4F1 1045 aaPredicted RBP14.19□□□□□ -0.14
PHF3-211ENST00000514822 NPM1P06748 294 aaKnown RBP eCLIP14.11□□□□□ -0.15
PHF3-211ENST00000514822 MNX1P50219 401 aaPredicted RBP14.11□□□□□ -0.15
PHF3-211ENST00000514822 ZBTB47Q9UFB7 747 aaPredicted RBP14.11□□□□□ -0.15
PHF3-211ENST00000514822 HAX1O00165 279 aa14.07□□□□□ -0.16
PHF3-211ENST00000514822 KLHL34Q8N239 644 aa14.01□□□□□ -0.17
PHF3-211ENST00000514822 C19orf67A6NJJ6 358 aa14□□□□□ -0.17
PHF3-211ENST00000514822 IFNLR1Q8IU57 520 aaPredicted RBP13.97□□□□□ -0.17
PHF3-211ENST00000514822 CD44P16070 742 aaKnown RBP13.96□□□□□ -0.17
PHF3-211ENST00000514822 PAK3O75914 559 aaPredicted RBP13.92□□□□□ -0.18
PHF3-211ENST00000514822 NUBP1P53384 320 aa13.88□□□□□ -0.19
PHF3-211ENST00000514822 EVX2Q03828 476 aa13.88□□□□□ -0.19
PHF3-211ENST00000514822 ZRANB1Q9UGI0 708 aa13.87□□□□□ -0.19
PHF3-211ENST00000514822 SPOCK2Q92563 424 aa13.86□□□□□ -0.19
PHF3-211ENST00000514822 RASEFQ8IZ41 740 aa13.85□□□□□ -0.19
PHF3-211ENST00000514822 TSPYL2Q9H2G4 693 aaPredicted RBP13.84□□□□□ -0.19
PHF3-211ENST00000514822 FAM212AQ96EL1 285 aa13.82□□□□□ -0.2
PHF3-211ENST00000514822 SP7Q8TDD2 431 aaPredicted RBP13.8□□□□□ -0.2
PHF3-211ENST00000514822 ZNF579Q8NAF0 562 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms