RNA–Protein interactions for RNA: ENST00000511092.5

CLCN3-207, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-207ENST00000511092 AEBP2Q6ZN18 517 aaPredicted RBP22.94■■□□□ 1.26
CLCN3-207ENST00000511092 CHIC1Q5VXU3 224 aa21.99■■□□□ 1.11
CLCN3-207ENST00000511092 SENP3Q9H4L4 574 aaPredicted RBP19.6■□□□□ 0.73
CLCN3-207ENST00000511092 PHF23Q9BUL5 403 aaPredicted RBP19.31■□□□□ 0.68
CLCN3-207ENST00000511092 FOXD1Q16676 465 aa18.2■□□□□ 0.5
CLCN3-207ENST00000511092 PLPPR3Q6T4P5 718 aa17.65■□□□□ 0.42
CLCN3-207ENST00000511092 DNAJC5BQ9UF47 199 aa17.59■□□□□ 0.41
CLCN3-207ENST00000511092 ABCC9O60706 1549 aa17.26■□□□□ 0.35
CLCN3-207ENST00000511092 DNAJC5Q9H3Z4 198 aa17.13■□□□□ 0.33
CLCN3-207ENST00000511092 PPP6R1Q9UPN7 881 aa17.11■□□□□ 0.33
CLCN3-207ENST00000511092 MSH5O43196 834 aa17.04■□□□□ 0.32
CLCN3-207ENST00000511092 PIAS4Q8N2W9 510 aaPredicted RBP17.04■□□□□ 0.32
CLCN3-207ENST00000511092 ADRA2BP18089 450 aa17.03■□□□□ 0.32
CLCN3-207ENST00000511092 NISCHQ9Y2I1 1504 aa16.65■□□□□ 0.26
CLCN3-207ENST00000511092 POTEDQ86YR6 584 aa16.29■□□□□ 0.2
CLCN3-207ENST00000511092 TRIM41Q8WV44 630 aa15.83■□□□□ 0.12
CLCN3-207ENST00000511092 PABPN1Q86U42 306 aaKnown RBP eCLIP15.75■□□□□ 0.11
CLCN3-207ENST00000511092 CCDC180Q9P1Z9 1646 aa15.69■□□□□ 0.1
CLCN3-207ENST00000511092 SCAF1Q9H7N4 1312 aaKnown RBP15.68■□□□□ 0.1
CLCN3-207ENST00000511092 CECR2Q9BXF3 1484 aa15.64■□□□□ 0.09
CLCN3-207ENST00000511092 RB1CC1Q8TDY2 1594 aa15.62■□□□□ 0.09
CLCN3-207ENST00000511092 UNC13AQ9UPW8 1703 aa15.6■□□□□ 0.09
CLCN3-207ENST00000511092 MAPK8IP2Q13387 824 aaPredicted RBP15.58■□□□□ 0.08
CLCN3-207ENST00000511092 DMRT2Q9Y5R5 561 aa15.57■□□□□ 0.08
CLCN3-207ENST00000511092 CC2D2AQ9P2K1 1620 aa15.54■□□□□ 0.08
CLCN3-207ENST00000511092 PPP4R3CPQ6ZMV5 832 aa15.45■□□□□ 0.06
CLCN3-207ENST00000511092 BICRAQ9NZM4 1560 aa15.4■□□□□ 0.06
CLCN3-207ENST00000511092 CUX2O14529 1486 aa15.39■□□□□ 0.05
CLCN3-207ENST00000511092 CNKSR2Q8WXI2 1034 aa15.16■□□□□ 0.02
CLCN3-207ENST00000511092 NACADO15069 1562 aa15.09■□□□□ 0.01
CLCN3-207ENST00000511092 HOXD11P31277 338 aaPredicted RBP15.08■□□□□ 0
CLCN3-207ENST00000511092 EIF4G1Q04637 1599 aaKnown RBP15.07■□□□□ 0
CLCN3-207ENST00000511092 ILDR1Q86SU0 546 aaPredicted RBP15.06■□□□□ 0
CLCN3-207ENST00000511092 RNF216Q9NWF9 866 aaPredicted RBP15□□□□□ -0.01
CLCN3-207ENST00000511092 NCBP3Q53F19 620 aaKnown RBP14.93□□□□□ -0.02
CLCN3-207ENST00000511092 ERCC6Q03468 1493 aa14.91□□□□□ -0.02
CLCN3-207ENST00000511092 DCAF8L1A6NGE4 600 aa14.78□□□□□ -0.04
CLCN3-207ENST00000511092 SHROOM4Q9ULL8 1493 aa14.73□□□□□ -0.05
CLCN3-207ENST00000511092 NPM3O75607 178 aaKnown RBP14.7□□□□□ -0.06
CLCN3-207ENST00000511092 DCAF8L2P0C7V8 631 aa14.63□□□□□ -0.07
CLCN3-207ENST00000511092 THOC2Q8NI27 1593 aaKnown RBP14.63□□□□□ -0.07
CLCN3-207ENST00000511092 KCNA4P22459 653 aa14.62□□□□□ -0.07
CLCN3-207ENST00000511092 RIMBP3CA6NJZ7 1639 aa14.6□□□□□ -0.07
CLCN3-207ENST00000511092 RIMBP3BA6NNM3 1639 aa14.6□□□□□ -0.07
CLCN3-207ENST00000511092 RIMBP3Q9UFD9 1639 aa14.6□□□□□ -0.07
CLCN3-207ENST00000511092 RNF39Q9H2S5 420 aa14.54□□□□□ -0.08
CLCN3-207ENST00000511092 BAZ1AQ9NRL2 1556 aaPredicted RBP14.52□□□□□ -0.08
CLCN3-207ENST00000511092 TRHP20396 242 aaPredicted RBP14.5□□□□□ -0.09
CLCN3-207ENST00000511092 CACNB1Q02641 598 aaPredicted RBP14.43□□□□□ -0.1
CLCN3-207ENST00000511092 NESP48681 1621 aa14.43□□□□□ -0.1
CLCN3-207ENST00000511092 SMARCA2P51531 1590 aa14.36□□□□□ -0.11
CLCN3-207ENST00000511092 C1QBPQ07021 282 aaKnown RBP14.35□□□□□ -0.11
CLCN3-207ENST00000511092 ARHGEF11O15085 1522 aa14.31□□□□□ -0.12
CLCN3-207ENST00000511092 SCRIBQ14160 1630 aa14.3□□□□□ -0.12
CLCN3-207ENST00000511092 OSCARQ8IYS5 282 aa14.29□□□□□ -0.12
CLCN3-207ENST00000511092 KIF21AQ7Z4S6 1674 aa14.29□□□□□ -0.12
CLCN3-207ENST00000511092 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.28□□□□□ -0.12
CLCN3-207ENST00000511092 MYO15BQ96JP2 1530 aa14.27□□□□□ -0.12
CLCN3-207ENST00000511092 CYB5RLQ6IPT4 315 aa14.17□□□□□ -0.14
CLCN3-207ENST00000511092 LMTK3Q96Q04 1460 aa14.13□□□□□ -0.15
CLCN3-207ENST00000511092 ARAP1Q96P48 1450 aa14.09□□□□□ -0.15
CLCN3-207ENST00000511092 SOCS7O14512 581 aa14.04□□□□□ -0.16
CLCN3-207ENST00000511092 U3KPZ7 1027 aaPredicted RBP14.04□□□□□ -0.16
CLCN3-207ENST00000511092 ILDR2Q71H61 639 aa14.02□□□□□ -0.17
CLCN3-207ENST00000511092 SLC4A2P04920 1241 aa14□□□□□ -0.17
CLCN3-207ENST00000511092 WDR62O43379 1518 aa13.95□□□□□ -0.18
CLCN3-207ENST00000511092 LAMC3Q9Y6N6 1575 aa13.92□□□□□ -0.18
CLCN3-207ENST00000511092 NCAPD3P42695 1498 aa13.92□□□□□ -0.18
CLCN3-207ENST00000511092 SLC4A1APQ9BWU0 796 aaKnown RBP13.91□□□□□ -0.18
CLCN3-207ENST00000511092 ERCC6L2Q5T890 1561 aa13.9□□□□□ -0.18
CLCN3-207ENST00000511092 MRC2Q9UBG0 1479 aa13.89□□□□□ -0.19
CLCN3-207ENST00000511092 FBXO41Q8TF61 875 aa13.89□□□□□ -0.19
CLCN3-207ENST00000511092 KDM4FA0A1W2PPD8 638 aa13.87□□□□□ -0.19
CLCN3-207ENST00000511092 HECW2Q9P2P5 1572 aa13.83□□□□□ -0.19
CLCN3-207ENST00000511092 PDS5BQ9NTI5 1447 aa13.78□□□□□ -0.2
CLCN3-207ENST00000511092 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.75□□□□□ -0.21
CLCN3-207ENST00000511092 HNRNPUL2Q1KMD3 747 aaKnown RBP13.75□□□□□ -0.21
CLCN3-207ENST00000511092 HMGXB3Q12766 1538 aa13.74□□□□□ -0.21
CLCN3-207ENST00000511092 SPINK5Q9NQ38 1064 aaPredicted RBP13.74□□□□□ -0.21
CLCN3-207ENST00000511092 ATAD2BQ9ULI0 1458 aa13.73□□□□□ -0.21
CLCN3-207ENST00000511092 APLP2Q06481 763 aa13.72□□□□□ -0.21
CLCN3-207ENST00000511092 CHD1O14646 1710 aa13.71□□□□□ -0.21
CLCN3-207ENST00000511092 CAPN15O75808 1086 aa13.7□□□□□ -0.22
CLCN3-207ENST00000511092 DISP3Q9P2K9 1392 aa13.7□□□□□ -0.22
CLCN3-207ENST00000511092 SAMD1Q6SPF0 538 aaPredicted RBP13.67□□□□□ -0.22
CLCN3-207ENST00000511092 DSG3P32926 999 aa13.64□□□□□ -0.23
CLCN3-207ENST00000511092 MYCNP04198 464 aaPredicted RBP13.63□□□□□ -0.23
CLCN3-207ENST00000511092 KIF13AQ9H1H9 1805 aa13.62□□□□□ -0.23
CLCN3-207ENST00000511092 SMARCA4P51532 1647 aa13.6□□□□□ -0.23
CLCN3-207ENST00000511092 RSF1Q96T23 1441 aaPredicted RBP13.59□□□□□ -0.23
CLCN3-207ENST00000511092 ZNF219Q9P2Y4 722 aaPredicted RBP13.59□□□□□ -0.23
CLCN3-207ENST00000511092 FOXD4L1Q9NU39 408 aa13.57□□□□□ -0.24
CLCN3-207ENST00000511092 DCAF1Q9Y4B6 1507 aa13.56□□□□□ -0.24
CLCN3-207ENST00000511092 SYNJ2O15056 1496 aa13.54□□□□□ -0.24
CLCN3-207ENST00000511092 ZNF608Q9ULD9 1512 aaPredicted RBP13.54□□□□□ -0.24
CLCN3-207ENST00000511092 SPATA31D1Q6ZQQ2 1576 aa13.54□□□□□ -0.24
CLCN3-207ENST00000511092 BAZ1BQ9UIG0 1483 aaKnown RBP13.5□□□□□ -0.25
CLCN3-207ENST00000511092 CEP164Q9UPV0 1460 aa13.5□□□□□ -0.25
CLCN3-207ENST00000511092 ZCCHC6Q5VYS8 1495 aaKnown RBP13.49□□□□□ -0.25
CLCN3-207ENST00000511092 ADGRL1O94910 1474 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms