RNA–Protein interactions for RNA: ENST00000509142.5

SEC31A-228, Transcript of SEC31 homolog A, COPII coat complex component, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SEC31A, Length 3,861 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC31A-228ENST00000509142 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.88□□□□□ -0.511e-10■■■■■ 52
SEC31A-228ENST00000509142 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.79□□□□□ -0.523e-6■■■■■ 50.8
SEC31A-228ENST00000509142 TARDBPQ13148 414 aaKnown RBP eCLIP10.36□□□□□ -0.752e-8■■■■■ 33.5
SEC31A-228ENST00000509142 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11□□□□□ -0.652e-7■■■■■ 32.8
SEC31A-228ENST00000509142 RBM22Q9NW64 420 aaKnown RBP eCLIP11.14□□□□□ -0.632e-6■■■■□ 25.6
SEC31A-228ENST00000509142 MATR3P43243 847 aaKnown RBP eCLIP12.04□□□□□ -0.485e-7■■■■□ 23.2
SEC31A-228ENST00000509142 SUB1P53999 127 aaKnown RBP eCLIP8.9□□□□□ -0.996e-18■■■■□ 22.9
SEC31A-228ENST00000509142 EFTUD2Q15029 972 aaKnown RBP eCLIP11.46□□□□□ -0.586e-8■■■■□ 22.8
SEC31A-228ENST00000509142 SF3B4Q15427 424 aaKnown RBP eCLIP10.36□□□□□ -0.757e-7■■■■□ 22.6
SEC31A-228ENST00000509142 PABPN1Q86U42 306 aaKnown RBP eCLIP17.57■□□□□ 0.42e-7■■■■□ 22
SEC31A-228ENST00000509142 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.56□□□□□ -1.044e-7■■■■□ 21.7
SEC31A-228ENST00000509142 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.53□□□□□ -0.882e-8■■■■□ 21.3
SEC31A-228ENST00000509142 AQRO60306 1485 aaKnown RBP eCLIP15.87■□□□□ 0.137e-7■■■■□ 21.1
SEC31A-228ENST00000509142 HNRNPMP52272 730 aaKnown RBP eCLIP15.22■□□□□ 0.038e-7■■■■□ 21
SEC31A-228ENST00000509142 IGF2BP3O00425 579 aaKnown RBP eCLIP11.5□□□□□ -0.574e-7■■■■□ 20.7
SEC31A-228ENST00000509142 PABPC4Q13310 644 aaKnown RBP eCLIP12.11□□□□□ -0.471e-9■■■■□ 20.4
SEC31A-228ENST00000509142 QKIQ96PU8 341 aaKnown RBP eCLIP11.3□□□□□ -0.65e-7■■■■□ 20.3
SEC31A-228ENST00000509142 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.3□□□□□ -0.762e-6■■■■□ 19.5
SEC31A-228ENST00000509142 ZC3H11AO75152 810 aaKnown RBP eCLIP11.71□□□□□ -0.533e-10■■■□□ 18.9
SEC31A-228ENST00000509142 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.88□□□□□ -0.672e-8■■■□□ 18.8
SEC31A-228ENST00000509142 GPKOWQ92917 476 aaPredicted RBP eCLIP12.45□□□□□ -0.422e-6■■■□□ 18.2
SEC31A-228ENST00000509142 CSTF2P33240 577 aaKnown RBP eCLIP10.29□□□□□ -0.764e-8■■■□□ 17.3
SEC31A-228ENST00000509142 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.86□□□□□ -0.673e-9■■■□□ 17.2
SEC31A-228ENST00000509142 KHSRPQ92945 711 aaKnown RBP eCLIP11.35□□□□□ -0.593e-9■■■□□ 16.9
SEC31A-228ENST00000509142 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.23□□□□□ -0.773e-7■■■□□ 16.7
SEC31A-228ENST00000509142 HNRNPLP14866 589 aaKnown RBP eCLIP11.03□□□□□ -0.641e-8■■■□□ 16.5
SEC31A-228ENST00000509142 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.76□□□□□ -0.697e-15■■■□□ 16.1
SEC31A-228ENST00000509142 DDX42Q86XP3 938 aaKnown RBP eCLIP11.89□□□□□ -0.513e-6■■■□□ 16.1
SEC31A-228ENST00000509142 DDX3XO00571 662 aaKnown RBP eCLIP11.89□□□□□ -0.513e-14■■■□□ 15.9
SEC31A-228ENST00000509142 FXR1P51114 621 aaKnown RBP eCLIP12.34□□□□□ -0.432e-6■■■□□ 15.9
SEC31A-228ENST00000509142 TRA2AQ13595 282 aaKnown RBP eCLIP9.69□□□□□ -0.861e-7■■■□□ 15.7
SEC31A-228ENST00000509142 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.67□□□□□ -0.544e-29■■■□□ 15.4
SEC31A-228ENST00000509142 PCBP2Q15366 365 aaKnown RBP eCLIP10.78□□□□□ -0.685e-11■■■□□ 15.4
SEC31A-228ENST00000509142 SRSF1Q07955 248 aaKnown RBP eCLIP8.27□□□□□ -1.099e-7■■■□□ 15.2
SEC31A-228ENST00000509142 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.9□□□□□ -0.346e-8■■■□□ 14.8
SEC31A-228ENST00000509142 U2AF2P26368 475 aaKnown RBP eCLIP12.68□□□□□ -0.382e-7■■□□□ 14.5
SEC31A-228ENST00000509142 HNRNPKP61978 463 aaKnown RBP eCLIP10.03□□□□□ -0.86e-7■■□□□ 14.4
SEC31A-228ENST00000509142 EIF3HO15372 352 aaKnown RBP eCLIP11.9□□□□□ -0.51e-6■■□□□ 14.3
SEC31A-228ENST00000509142 U2AF1Q01081 240 aaKnown RBP eCLIP14.23□□□□□ -0.132e-7■■□□□ 14.3
SEC31A-228ENST00000509142 SF3A3Q12874 501 aaKnown RBP eCLIP11.71□□□□□ -0.548e-7■■□□□ 14.1
SEC31A-228ENST00000509142 HLTFQ14527 1009 aaKnown RBP eCLIP11.89□□□□□ -0.513e-8■■□□□ 13.9
SEC31A-228ENST00000509142 PPIGQ13427 754 aaKnown RBP eCLIP10.56□□□□□ -0.725e-8■■□□□ 13.8
SEC31A-228ENST00000509142 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.86□□□□□ -0.515e-7■■□□□ 13.8
SEC31A-228ENST00000509142 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.03□□□□□ -0.323e-7■■□□□ 13.8
SEC31A-228ENST00000509142 FMR1Q06787 632 aaKnown RBP eCLIP12.49□□□□□ -0.416e-7■■□□□ 13.6
SEC31A-228ENST00000509142 PUM1Q14671 1186 aaKnown RBP eCLIP10.37□□□□□ -0.752e-6■■□□□ 13.4
SEC31A-228ENST00000509142 TIA1P31483 386 aaKnown RBP eCLIP10.55□□□□□ -0.722e-6■■□□□ 13.3
SEC31A-228ENST00000509142 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.46□□□□□ -0.422e-19■■□□□ 13.3
SEC31A-228ENST00000509142 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.23□□□□□ -0.292e-13■■□□□ 13.3
SEC31A-228ENST00000509142 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.12□□□□□ -0.154e-7■■□□□ 13.2
SEC31A-228ENST00000509142 ILF3Q12906 894 aaKnown RBP eCLIP10.26□□□□□ -0.772e-11■■□□□ 12.8
SEC31A-228ENST00000509142 NIPBLQ6KC79 2804 aaeCLIP7.95□□□□□ -1.142e-6■■□□□ 12.5
SEC31A-228ENST00000509142 PUS1Q9Y606 427 aaKnown RBP eCLIP9.27□□□□□ -0.935e-6■■□□□ 12.4
SEC31A-228ENST00000509142 PRPF4O43172 522 aaKnown RBP eCLIP11.42□□□□□ -0.581e-6■■□□□ 12.3
SEC31A-228ENST00000509142 PCBP1Q15365 356 aaKnown RBP eCLIP11.35□□□□□ -0.599e-27■■□□□ 12.2
SEC31A-228ENST00000509142 RBFOX2O43251 390 aaKnown RBP eCLIP9.05□□□□□ -0.963e-22■■□□□ 12.2
SEC31A-228ENST00000509142 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.09■□□□□ 0.014e-7■■□□□ 12.2
SEC31A-228ENST00000509142 TIAL1Q01085 375 aaKnown RBP eCLIP10.9□□□□□ -0.663e-7■■□□□ 12.1
SEC31A-228ENST00000509142 SF3B1O75533 1304 aaKnown RBP eCLIP11.21□□□□□ -0.614e-7■■□□□ 12.1
SEC31A-228ENST00000509142 HNRNPCP07910 306 aaKnown RBP eCLIP10.63□□□□□ -0.719e-7■■□□□ 11.9
SEC31A-228ENST00000509142 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.25□□□□□ -0.611e-6■■□□□ 11.5
SEC31A-228ENST00000509142 YBX3P16989 372 aaKnown RBP eCLIP11.4□□□□□ -0.585e-10■□□□□ 11.2
SEC31A-228ENST00000509142 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.36□□□□□ -0.599e-9■□□□□ 11.2
SEC31A-228ENST00000509142 RPS3P23396 243 aaKnown RBP eCLIP10.76□□□□□ -0.692e-7■□□□□ 11.2
SEC31A-228ENST00000509142 PTBP1P26599 531 aaKnown RBP eCLIP10.03□□□□□ -0.86e-8■□□□□ 11.1
SEC31A-228ENST00000509142 FXR2P51116 673 aaKnown RBP eCLIP12.21□□□□□ -0.451e-8■□□□□ 11.1
SEC31A-228ENST00000509142 DDX6P26196 483 aaKnown RBP eCLIP10.64□□□□□ -0.712e-13■□□□□ 10.7
SEC31A-228ENST00000509142 LSM11P83369 360 aaKnown RBP eCLIP10.34□□□□□ -0.758e-8■□□□□ 10.5
SEC31A-228ENST00000509142 G3BP1Q13283 466 aaKnown RBP eCLIP13.28□□□□□ -0.282e-7■□□□□ 10.2
SEC31A-228ENST00000509142 WDR43Q15061 677 aaKnown RBP eCLIP14.57□□□□□ -0.086e-7■□□□□ 9.8
SEC31A-228ENST00000509142 XRCC6P12956 609 aaKnown RBP eCLIP13.63□□□□□ -0.232e-6■□□□□ 9.8
SEC31A-228ENST00000509142 ZNF622Q969S3 477 aaKnown RBP eCLIP12.29□□□□□ -0.447e-8■□□□□ 9.4
SEC31A-228ENST00000509142 SND1Q7KZF4 910 aaKnown RBP eCLIP11.99□□□□□ -0.491e-8■□□□□ 9.2
SEC31A-228ENST00000509142 FUBP3Q96I24 572 aaKnown RBP eCLIP11.06□□□□□ -0.641e-8■□□□□ 8.3
Retrieved 74 of 74 RNA–protein pairs in 8 ms