RNA–Protein interactions for RNA: ENST00000507955.5

DDX41-208, Transcript of DEAD-box helicase 41, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX41, Length 2,607 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-208ENST00000507955 NISCHQ9Y2I1 1504 aa30.83■■■□□ 2.53
DDX41-208ENST00000507955 SHROOM4Q9ULL8 1493 aa26.32■■□□□ 1.8
DDX41-208ENST00000507955 CCDC180Q9P1Z9 1646 aa26.22■■□□□ 1.79
DDX41-208ENST00000507955 ZCCHC6Q5VYS8 1495 aaKnown RBP25.99■■□□□ 1.75
DDX41-208ENST00000507955 DCAF8L2P0C7V8 631 aa25.95■■□□□ 1.74
DDX41-208ENST00000507955 SUPT5HO00267 1087 aaKnown RBP25.64■■□□□ 1.7
DDX41-208ENST00000507955 DCAF1Q9Y4B6 1507 aa25.16■■□□□ 1.62
DDX41-208ENST00000507955 ABCC9O60706 1549 aa24.84■■□□□ 1.57
DDX41-208ENST00000507955 SCRIBQ14160 1630 aa24.74■■□□□ 1.55
DDX41-208ENST00000507955 CHIC1Q5VXU3 224 aa24.67■■□□□ 1.54
DDX41-208ENST00000507955 MYO15BQ96JP2 1530 aa24.52■■□□□ 1.52
DDX41-208ENST00000507955 NACADO15069 1562 aa24.37■■□□□ 1.49
DDX41-208ENST00000507955 RSF1Q96T23 1441 aaPredicted RBP24.33■■□□□ 1.49
DDX41-208ENST00000507955 CECR2Q9BXF3 1484 aa24.2■■□□□ 1.46
DDX41-208ENST00000507955 RB1CC1Q8TDY2 1594 aa24.06■■□□□ 1.44
DDX41-208ENST00000507955 LOC105371045A0A1W2PR82 267 aa24.06■■□□□ 1.44
DDX41-208ENST00000507955 MROH2BQ7Z745 1585 aa24.03■■□□□ 1.44
DDX41-208ENST00000507955 WIZO95785 1651 aa23.89■■□□□ 1.41
DDX41-208ENST00000507955 TRIM41Q8WV44 630 aa23.81■■□□□ 1.4
DDX41-208ENST00000507955 PABPN1Q86U42 306 aaKnown RBP eCLIP23.78■■□□□ 1.43e-7■■■■□ 23.8
DDX41-208ENST00000507955 UNC13AQ9UPW8 1703 aa23.77■■□□□ 1.4
DDX41-208ENST00000507955 FAM9AQ8IZU1 332 aaPredicted RBP23.75■■□□□ 1.39
DDX41-208ENST00000507955 EHMT2Q96KQ7 1210 aa23.67■■□□□ 1.38
DDX41-208ENST00000507955 BAZ1AQ9NRL2 1556 aaPredicted RBP23.66■■□□□ 1.38
DDX41-208ENST00000507955 PCGF6Q9BYE7 350 aa23.66■■□□□ 1.38
DDX41-208ENST00000507955 SMARCA4P51532 1647 aa23.54■■□□□ 1.36
DDX41-208ENST00000507955 HRCP23327 699 aa23.52■■□□□ 1.36
DDX41-208ENST00000507955 BICRAQ9NZM4 1560 aa23.5■■□□□ 1.35
DDX41-208ENST00000507955 TOP2AP11388 1531 aaKnown RBP23.39■■□□□ 1.34
DDX41-208ENST00000507955 CCDC88BA6NC98 1476 aa23.39■■□□□ 1.33
DDX41-208ENST00000507955 SMARCA2P51531 1590 aa23.31■■□□□ 1.32
DDX41-208ENST00000507955 EIF4G1Q04637 1599 aaKnown RBP23.31■■□□□ 1.32
DDX41-208ENST00000507955 ABCC8Q09428 1581 aa23.29■■□□□ 1.32
DDX41-208ENST00000507955 TRIM26Q12899 539 aaPredicted RBP23.14■■□□□ 1.3
DDX41-208ENST00000507955 PPARGC1BQ86YN6 1023 aaKnown RBP23.11■■□□□ 1.29
DDX41-208ENST00000507955 ATAD2BQ9ULI0 1458 aa23.05■■□□□ 1.28
DDX41-208ENST00000507955 PEG3Q9GZU2 1588 aa23.02■■□□□ 1.28
DDX41-208ENST00000507955 SOGA1O94964 1423 aa23.02■■□□□ 1.27
DDX41-208ENST00000507955 BAZ1BQ9UIG0 1483 aaKnown RBP22.96■■□□□ 1.27
DDX41-208ENST00000507955 RUSC2Q8N2Y8 1516 aa22.95■■□□□ 1.26
DDX41-208ENST00000507955 WRNQ14191 1432 aaPredicted RBP eCLIP22.85■■□□□ 1.25
DDX41-208ENST00000507955 CSRNP3Q8WYN3 585 aa22.8■■□□□ 1.24
DDX41-208ENST00000507955 TTBK1Q5TCY1 1321 aaPredicted RBP22.79■■□□□ 1.24
DDX41-208ENST00000507955 SYNJ1O43426 1573 aa22.77■■□□□ 1.24
DDX41-208ENST00000507955 UBTFP17480 764 aaKnown RBP22.76■■□□□ 1.23
DDX41-208ENST00000507955 CEP162Q5TB80 1403 aa22.68■■□□□ 1.22
DDX41-208ENST00000507955 TNIKQ9UKE5 1360 aa22.61■■□□□ 1.21
DDX41-208ENST00000507955 EEA1Q15075 1411 aa22.61■■□□□ 1.21
DDX41-208ENST00000507955 NCAPD3P42695 1498 aa22.61■■□□□ 1.21
DDX41-208ENST00000507955 RANGAP1P46060 587 aaPredicted RBP22.56■■□□□ 1.2
DDX41-208ENST00000507955 GOLGA3Q08378 1498 aa22.53■■□□□ 1.2
DDX41-208ENST00000507955 HMGXB3Q12766 1538 aa22.52■■□□□ 1.2
DDX41-208ENST00000507955 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.45■■□□□ 1.18
DDX41-208ENST00000507955 TOP2BQ02880 1626 aa22.44■■□□□ 1.18
DDX41-208ENST00000507955 CEP164Q9UPV0 1460 aa22.43■■□□□ 1.18
DDX41-208ENST00000507955 RAPGEF2Q9Y4G8 1499 aa22.43■■□□□ 1.18
DDX41-208ENST00000507955 ZEB1P37275 1124 aaPredicted RBP22.37■■□□□ 1.17
DDX41-208ENST00000507955 CUX1P39880 1505 aa22.36■■□□□ 1.17
DDX41-208ENST00000507955 CFTRP13569 1480 aa22.36■■□□□ 1.17
DDX41-208ENST00000507955 KIF21BO75037 1637 aa22.36■■□□□ 1.17
DDX41-208ENST00000507955 BIVM-ERCC5R4GMW8 1640 aa22.33■■□□□ 1.16
DDX41-208ENST00000507955 CLIP1P30622 1438 aa22.32■■□□□ 1.16
DDX41-208ENST00000507955 CCER1Q8TC90 406 aaPredicted RBP22.28■■□□□ 1.16
DDX41-208ENST00000507955 CC2D2AQ9P2K1 1620 aa22.28■■□□□ 1.16
DDX41-208ENST00000507955 CADPSQ9ULU8 1353 aa22.2■■□□□ 1.15
DDX41-208ENST00000507955 PRXQ9BXM0 1461 aa22.16■■□□□ 1.14
DDX41-208ENST00000507955 KIF27Q86VH2 1401 aa22.14■■□□□ 1.14
DDX41-208ENST00000507955 VPS8Q8N3P4 1428 aa22.14■■□□□ 1.14
DDX41-208ENST00000507955 HNRNPUL2Q1KMD3 747 aaKnown RBP22.11■■□□□ 1.13
DDX41-208ENST00000507955 APLP2Q06481 763 aa22.09■■□□□ 1.13
DDX41-208ENST00000507955 DNAJC5BQ9UF47 199 aa22.08■■□□□ 1.12
DDX41-208ENST00000507955 CUX2O14529 1486 aa22.06■■□□□ 1.12
DDX41-208ENST00000507955 NESP48681 1621 aa22.05■■□□□ 1.12
DDX41-208ENST00000507955 ERICH3Q5RHP9 1530 aa22.04■■□□□ 1.12
DDX41-208ENST00000507955 PRDM2Q13029 1718 aa22.04■■□□□ 1.12
DDX41-208ENST00000507955 FGD5Q6ZNL6 1462 aa22.02■■□□□ 1.12
DDX41-208ENST00000507955 IGF1RP08069 1367 aa22■■□□□ 1.11
DDX41-208ENST00000507955 ARAP1Q96P48 1450 aa22■■□□□ 1.11
DDX41-208ENST00000507955 FANCD2Q9BXW9 1451 aa22■■□□□ 1.11
DDX41-208ENST00000507955 KANK4Q5T7N3 995 aaPredicted RBP21.97■■□□□ 1.11
DDX41-208ENST00000507955 RAD54L2Q9Y4B4 1467 aa21.92■■□□□ 1.1
DDX41-208ENST00000507955 CARMIL1Q5VZK9 1371 aa21.89■■□□□ 1.09
DDX41-208ENST00000507955 ARHGAP35Q9NRY4 1499 aa21.87■■□□□ 1.09
DDX41-208ENST00000507955 P3H3Q8IVL6 736 aa21.83■■□□□ 1.09
DDX41-208ENST00000507955 TOPBP1Q92547 1522 aa21.81■■□□□ 1.08
DDX41-208ENST00000507955 SCAF1Q9H7N4 1312 aaKnown RBP21.8■■□□□ 1.08
DDX41-208ENST00000507955 POLA1P09884 1462 aaPredicted RBP21.8■■□□□ 1.08
DDX41-208ENST00000507955 DNMBPQ6XZF7 1577 aa21.77■■□□□ 1.08
DDX41-208ENST00000507955 URB2Q14146 1524 aaKnown RBP21.72■■□□□ 1.07
DDX41-208ENST00000507955 ITGAEP38570 1179 aa21.71■■□□□ 1.07
DDX41-208ENST00000507955 ATP1B4Q9UN42 357 aaPredicted RBP21.71■■□□□ 1.07
DDX41-208ENST00000507955 TDRD9Q8NDG6 1382 aaKnown RBP21.69■■□□□ 1.06
DDX41-208ENST00000507955 ABCA10Q8WWZ4 1543 aa21.69■■□□□ 1.06
DDX41-208ENST00000507955 LAMC3Q9Y6N6 1575 aa21.65■■□□□ 1.06
DDX41-208ENST00000507955 DIEXFQ68CQ4 756 aaKnown RBP21.63■■□□□ 1.05
DDX41-208ENST00000507955 FHOD3Q2V2M9 1422 aa21.59■■□□□ 1.05
DDX41-208ENST00000507955 PDS5BQ9NTI5 1447 aa21.58■■□□□ 1.04
DDX41-208ENST00000507955 KIF21AQ7Z4S6 1674 aa21.57■■□□□ 1.04
DDX41-208ENST00000507955 RRBP1Q9P2E9 1410 aaKnown RBP21.56■■□□□ 1.04
DDX41-208ENST00000507955 CCNB3Q8WWL7 1395 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms