RNA–Protein interactions for RNA: ENST00000506909.5

PDCD6-204, Transcript of programmed cell death 6, humanhuman

TSL 3

Gene PDCD6, Length 458 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD6-204ENST00000506909 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.58□□□□□ -0.41e-18■■■■■ 114.6
PDCD6-204ENST00000506909 SF3B1O75533 1304 aaKnown RBP eCLIP14.78□□□□□ -0.042e-6■■■■■ 103.4
PDCD6-204ENST00000506909 QKIQ96PU8 341 aaKnown RBP eCLIP13.59□□□□□ -0.232e-16■■■■■ 59
PDCD6-204ENST00000506909 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.83□□□□□ -0.686e-8■■■■■ 55.7
PDCD6-204ENST00000506909 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.31□□□□□ -0.282e-6■■■■■ 54.9
PDCD6-204ENST00000506909 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.57□□□□□ -0.083e-7■■■■■ 54.3
PDCD6-204ENST00000506909 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.43□□□□□ -0.19e-7■■■■■ 53.5
PDCD6-204ENST00000506909 EIF4G2P78344 907 aaKnown RBP eCLIP18.98■□□□□ 0.633e-7■■■■■ 50.1
PDCD6-204ENST00000506909 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.9□□□□□ -0.342e-6■■■■■ 48.1
PDCD6-204ENST00000506909 SUB1P53999 127 aaKnown RBP eCLIP10.3□□□□□ -0.761e-9■■■■■ 46.9
PDCD6-204ENST00000506909 PCBP2Q15366 365 aaKnown RBP eCLIP12.85□□□□□ -0.358e-7■■■■■ 46.6
PDCD6-204ENST00000506909 PCBP1Q15365 356 aaKnown RBP eCLIP15.07■□□□□ 06e-8■■■■■ 46.6
PDCD6-204ENST00000506909 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.85■□□□□ 0.932e-7■■■■■ 43.8
PDCD6-204ENST00000506909 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.48□□□□□ -0.256e-12■■■■■ 40.3
PDCD6-204ENST00000506909 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.16■□□□□ 0.022e-10■■■■■ 38.3
PDCD6-204ENST00000506909 HNRNPMP52272 730 aaKnown RBP eCLIP21.28■■□□□ 12e-7■■■■■ 37.9
PDCD6-204ENST00000506909 DKC1O60832 514 aaKnown RBP eCLIP15.25■□□□□ 0.032e-7■■■■■ 35.4
PDCD6-204ENST00000506909 WRNQ14191 1432 aaPredicted RBP eCLIP23.73■■□□□ 1.395e-6■■■■■ 33.4
PDCD6-204ENST00000506909 PRPF4O43172 522 aaKnown RBP eCLIP12.9□□□□□ -0.341e-8■■■■■ 33.2
PDCD6-204ENST00000506909 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.27□□□□□ -0.453e-6■■■■■ 32.2
PDCD6-204ENST00000506909 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.79■■□□□ 1.083e-6■■■■■ 29.7
PDCD6-204ENST00000506909 YWHAGP61981 247 aaKnown RBP eCLIP14.24□□□□□ -0.137e-7■■■■■ 27.7
PDCD6-204ENST00000506909 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.02□□□□□ -0.175e-7■■■■■ 27.5
PDCD6-204ENST00000506909 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.1□□□□□ -0.158e-8■■■■□ 26.5
PDCD6-204ENST00000506909 DDX3XO00571 662 aaKnown RBP eCLIP14□□□□□ -0.175e-13■■■■□ 26.2
PDCD6-204ENST00000506909 EFTUD2Q15029 972 aaKnown RBP eCLIP12.97□□□□□ -0.335e-7■■■■□ 26.2
PDCD6-204ENST00000506909 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.57□□□□□ -0.563e-9■■■■□ 25.3
PDCD6-204ENST00000506909 AQRO60306 1485 aaKnown RBP eCLIP23.7■■□□□ 1.381e-6■■■■□ 25.2
PDCD6-204ENST00000506909 SF3A3Q12874 501 aaKnown RBP eCLIP12.15□□□□□ -0.464e-8■■■■□ 23.8
PDCD6-204ENST00000506909 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.49■□□□□ 0.231e-6■■■■□ 23.4
PDCD6-204ENST00000506909 HNRNPKP61978 463 aaKnown RBP eCLIP13.59□□□□□ -0.234e-7■■■■□ 23.3
PDCD6-204ENST00000506909 HLTFQ14527 1009 aaKnown RBP eCLIP13.41□□□□□ -0.262e-11■■■■□ 23.2
PDCD6-204ENST00000506909 BCCIPQ9P287 314 aaKnown RBP eCLIP13.98□□□□□ -0.177e-7■■■■□ 23
PDCD6-204ENST00000506909 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.91■□□□□ 0.142e-6■■■■□ 22.9
PDCD6-204ENST00000506909 EWSR1Q01844 656 aaKnown RBP eCLIP9.93□□□□□ -0.822e-6■■■■□ 22.5
PDCD6-204ENST00000506909 GTF2F1P35269 517 aaKnown RBP eCLIP14.83□□□□□ -0.044e-8■■■■□ 22.3
PDCD6-204ENST00000506909 LSM11P83369 360 aaKnown RBP eCLIP11.86□□□□□ -0.514e-6■■■■□ 22.2
PDCD6-204ENST00000506909 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.12■□□□□ 0.174e-6■■■■□ 21.8
PDCD6-204ENST00000506909 ZC3H11AO75152 810 aaKnown RBP eCLIP14.9□□□□□ -0.022e-12■■■■□ 21.5
PDCD6-204ENST00000506909 AATFQ9NY61 560 aaKnown RBP eCLIP16.49■□□□□ 0.238e-6■■■■□ 21.3
PDCD6-204ENST00000506909 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.64■□□□□ 0.899e-7■■■■□ 21.2
PDCD6-204ENST00000506909 RBFOX2O43251 390 aaKnown RBP eCLIP10.57□□□□□ -0.722e-7■■■■□ 21.1
PDCD6-204ENST00000506909 SMNDC1O75940 238 aaKnown RBP eCLIP12.11□□□□□ -0.478e-9■■■■□ 21
PDCD6-204ENST00000506909 RPS3P23396 243 aaKnown RBP eCLIP13.23□□□□□ -0.298e-10■■■■□ 20.7
PDCD6-204ENST00000506909 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.64□□□□□ -0.391e-6■■■□□ 18.9
PDCD6-204ENST00000506909 NONOQ15233 471 aaKnown RBP eCLIP15.41■□□□□ 0.067e-7■■■□□ 18.8
PDCD6-204ENST00000506909 FUSP35637 526 aaKnown RBP eCLIP8.97□□□□□ -0.971e-6■■■□□ 18.7
PDCD6-204ENST00000506909 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.76□□□□□ -0.053e-8■■■□□ 17.7
PDCD6-204ENST00000506909 ZRANB2O95218 330 aaKnown RBP eCLIP13.68□□□□□ -0.222e-6■■■□□ 16.1
PDCD6-204ENST00000506909 TARDBPQ13148 414 aaKnown RBP eCLIP13.4□□□□□ -0.261e-6■■■□□ 15.8
PDCD6-204ENST00000506909 SF3B4Q15427 424 aaKnown RBP eCLIP12.32□□□□□ -0.443e-7■■■□□ 15.5
PDCD6-204ENST00000506909 HNRNPLP14866 589 aaKnown RBP eCLIP14.07□□□□□ -0.163e-8■■■□□ 15.1
PDCD6-204ENST00000506909 XRCC6P12956 609 aaKnown RBP eCLIP15.17■□□□□ 0.021e-5■■■□□ 14.9
PDCD6-204ENST00000506909 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.42□□□□□ -0.586e-6■■□□□ 14.4
PDCD6-204ENST00000506909 ZNF622Q969S3 477 aaKnown RBP eCLIP17.44■□□□□ 0.381e-6■■□□□ 14.2
PDCD6-204ENST00000506909 PTBP1P26599 531 aaKnown RBP eCLIP10.48□□□□□ -0.731e-6■■□□□ 14
PDCD6-204ENST00000506909 SAFB2Q14151 953 aaKnown RBP eCLIP19.49■□□□□ 0.713e-8■■□□□ 13.6
PDCD6-204ENST00000506909 ILF3Q12906 894 aaKnown RBP eCLIP13.45□□□□□ -0.267e-7■■□□□ 13.2
PDCD6-204ENST00000506909 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.18■□□□□ 0.022e-9■■□□□ 12.3
PDCD6-204ENST00000506909 PABPC4Q13310 644 aaKnown RBP eCLIP16.21■□□□□ 0.191e-7■■□□□ 12.2
PDCD6-204ENST00000506909 RBM15Q96T37 977 aaKnown RBP eCLIP13.58□□□□□ -0.245e-7■■□□□ 11.4
PDCD6-204ENST00000506909 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.36■□□□□ 0.051e-6■□□□□ 11.2
PDCD6-204ENST00000506909 NIPBLQ6KC79 2804 aaeCLIP11.58□□□□□ -0.567e-6■□□□□ 10.5
PDCD6-204ENST00000506909 NOLC1Q14978 699 aaKnown RBP eCLIP14.85□□□□□ -0.036e-11■□□□□ 10
PDCD6-204ENST00000506909 DDX6P26196 483 aaKnown RBP eCLIP14.41□□□□□ -0.14e-11■□□□□ 9.8
PDCD6-204ENST00000506909 MATR3P43243 847 aaKnown RBP eCLIP14.81□□□□□ -0.043e-6■□□□□ 9.6
PDCD6-204ENST00000506909 YBX3P16989 372 aaKnown RBP eCLIP17.59■□□□□ 0.411e-8■□□□□ 8.4
Retrieved 67 of 67 RNA–protein pairs in 23 ms