RNA–Protein interactions for RNA: ENST00000505005.5

NR1I3-220, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1I3, Length 985 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-220ENST00000505005 NISCHQ9Y2I1 1504 aa23.56■■□□□ 1.36
NR1I3-220ENST00000505005 CCDC180Q9P1Z9 1646 aa21.01■□□□□ 0.95
NR1I3-220ENST00000505005 ABCC9O60706 1549 aa20.35■□□□□ 0.85
NR1I3-220ENST00000505005 NACADO15069 1562 aa19.78■□□□□ 0.76
NR1I3-220ENST00000505005 RB1CC1Q8TDY2 1594 aa19.78■□□□□ 0.76
NR1I3-220ENST00000505005 MYO15BQ96JP2 1530 aa19.74■□□□□ 0.75
NR1I3-220ENST00000505005 DCAF8L2P0C7V8 631 aa19.69■□□□□ 0.74
NR1I3-220ENST00000505005 DCAF1Q9Y4B6 1507 aa19.61■□□□□ 0.73
NR1I3-220ENST00000505005 ZCCHC6Q5VYS8 1495 aaKnown RBP19.6■□□□□ 0.73
NR1I3-220ENST00000505005 AEBP2Q6ZN18 517 aaPredicted RBP19.27■□□□□ 0.68
NR1I3-220ENST00000505005 CHIC1Q5VXU3 224 aa19.25■□□□□ 0.67
NR1I3-220ENST00000505005 UNC13AQ9UPW8 1703 aa19.13■□□□□ 0.65
NR1I3-220ENST00000505005 SHROOM4Q9ULL8 1493 aa19.1■□□□□ 0.65
NR1I3-220ENST00000505005 PABPN1Q86U42 306 aaKnown RBP eCLIP19.01■□□□□ 0.63
NR1I3-220ENST00000505005 SCRIBQ14160 1630 aa18.99■□□□□ 0.63
NR1I3-220ENST00000505005 BICRAQ9NZM4 1560 aa18.98■□□□□ 0.63
NR1I3-220ENST00000505005 EIF4G1Q04637 1599 aaKnown RBP18.56■□□□□ 0.56
NR1I3-220ENST00000505005 DNAJC5BQ9UF47 199 aa18.55■□□□□ 0.56
NR1I3-220ENST00000505005 CC2D2AQ9P2K1 1620 aa18.45■□□□□ 0.54
NR1I3-220ENST00000505005 CECR2Q9BXF3 1484 aa18.37■□□□□ 0.53
NR1I3-220ENST00000505005 BAZ1AQ9NRL2 1556 aaPredicted RBP18.34■□□□□ 0.53
NR1I3-220ENST00000505005 SMARCA2P51531 1590 aa18.25■□□□□ 0.51
NR1I3-220ENST00000505005 SMARCA4P51532 1647 aa18.24■□□□□ 0.51
NR1I3-220ENST00000505005 NCAPD3P42695 1498 aa18.22■□□□□ 0.51
NR1I3-220ENST00000505005 ATAD2BQ9ULI0 1458 aa18.16■□□□□ 0.5
NR1I3-220ENST00000505005 PEG3Q9GZU2 1588 aa18.14■□□□□ 0.49
NR1I3-220ENST00000505005 HMGXB3Q12766 1538 aa18.13■□□□□ 0.49
NR1I3-220ENST00000505005 BAZ1BQ9UIG0 1483 aaKnown RBP18.06■□□□□ 0.48
NR1I3-220ENST00000505005 MROH2BQ7Z745 1585 aa18.05■□□□□ 0.48
NR1I3-220ENST00000505005 RSF1Q96T23 1441 aaPredicted RBP17.92■□□□□ 0.46
NR1I3-220ENST00000505005 WIZO95785 1651 aa17.85■□□□□ 0.45
NR1I3-220ENST00000505005 TOP2AP11388 1531 aaKnown RBP17.77■□□□□ 0.44
NR1I3-220ENST00000505005 LAMC3Q9Y6N6 1575 aa17.76■□□□□ 0.43
NR1I3-220ENST00000505005 CADPSQ9ULU8 1353 aa17.69■□□□□ 0.42
NR1I3-220ENST00000505005 PDS5BQ9NTI5 1447 aa17.69■□□□□ 0.42
NR1I3-220ENST00000505005 ERCC6Q03468 1493 aa17.69■□□□□ 0.42
NR1I3-220ENST00000505005 NESP48681 1621 aa17.56■□□□□ 0.4
NR1I3-220ENST00000505005 CFTRP13569 1480 aa17.56■□□□□ 0.4
NR1I3-220ENST00000505005 CUX2O14529 1486 aa17.54■□□□□ 0.4
NR1I3-220ENST00000505005 CCDC88BA6NC98 1476 aa17.52■□□□□ 0.4
NR1I3-220ENST00000505005 SUPT5HO00267 1087 aaKnown RBP17.49■□□□□ 0.39
NR1I3-220ENST00000505005 CEP164Q9UPV0 1460 aa17.44■□□□□ 0.38
NR1I3-220ENST00000505005 PRDM2Q13029 1718 aa17.44■□□□□ 0.38
NR1I3-220ENST00000505005 FANCD2Q9BXW9 1451 aa17.43■□□□□ 0.38
NR1I3-220ENST00000505005 KIF21AQ7Z4S6 1674 aa17.4■□□□□ 0.38
NR1I3-220ENST00000505005 MRC2Q9UBG0 1479 aa17.39■□□□□ 0.37
NR1I3-220ENST00000505005 ABCC8Q09428 1581 aa17.36■□□□□ 0.37
NR1I3-220ENST00000505005 THOC2Q8NI27 1593 aaKnown RBP17.36■□□□□ 0.37
NR1I3-220ENST00000505005 WDR62O43379 1518 aa17.31■□□□□ 0.36
NR1I3-220ENST00000505005 URB2Q14146 1524 aaKnown RBP17.16■□□□□ 0.34
NR1I3-220ENST00000505005 DNMBPQ6XZF7 1577 aa17.15■□□□□ 0.34
NR1I3-220ENST00000505005 TOPBP1Q92547 1522 aa17.13■□□□□ 0.33
NR1I3-220ENST00000505005 IFT140Q96RY7 1462 aa17.12■□□□□ 0.33
NR1I3-220ENST00000505005 WDR97A6NE52 1622 aa17■□□□□ 0.31
NR1I3-220ENST00000505005 SOGA1O94964 1423 aa16.98■□□□□ 0.31
NR1I3-220ENST00000505005 POLA1P09884 1462 aaPredicted RBP16.98■□□□□ 0.31
NR1I3-220ENST00000505005 WRNQ14191 1432 aaPredicted RBP eCLIP16.96■□□□□ 0.31
NR1I3-220ENST00000505005 CUX1P39880 1505 aa16.94■□□□□ 0.3
NR1I3-220ENST00000505005 FGD5Q6ZNL6 1462 aa16.93■□□□□ 0.3
NR1I3-220ENST00000505005 DNAJC5Q9H3Z4 198 aa16.92■□□□□ 0.3
NR1I3-220ENST00000505005 TARBP1Q13395 1621 aaKnown RBP16.91■□□□□ 0.3
NR1I3-220ENST00000505005 TOP2BQ02880 1626 aa16.9■□□□□ 0.3
NR1I3-220ENST00000505005 PHF23Q9BUL5 403 aaPredicted RBP16.89■□□□□ 0.29
NR1I3-220ENST00000505005 BIVM-ERCC5R4GMW8 1640 aa16.88■□□□□ 0.29
NR1I3-220ENST00000505005 OSCARQ8IYS5 282 aa16.86■□□□□ 0.29
NR1I3-220ENST00000505005 ABCA10Q8WWZ4 1543 aa16.84■□□□□ 0.29
NR1I3-220ENST00000505005 EIF4G3O43432 1585 aaKnown RBP16.83■□□□□ 0.28
NR1I3-220ENST00000505005 ZNF608Q9ULD9 1512 aaPredicted RBP16.83■□□□□ 0.28
NR1I3-220ENST00000505005 RAD54L2Q9Y4B4 1467 aa16.83■□□□□ 0.28
NR1I3-220ENST00000505005 AQRO60306 1485 aaKnown RBP eCLIP16.8■□□□□ 0.28
NR1I3-220ENST00000505005 GRIN2BQ13224 1484 aa16.8■□□□□ 0.28
NR1I3-220ENST00000505005 TDRD9Q8NDG6 1382 aaKnown RBP16.79■□□□□ 0.28
NR1I3-220ENST00000505005 GAPVD1Q14C86 1478 aa16.78■□□□□ 0.28
NR1I3-220ENST00000505005 MAGI1Q96QZ7 1491 aaPredicted RBP16.78■□□□□ 0.28
NR1I3-220ENST00000505005 SYNJ1O43426 1573 aa16.77■□□□□ 0.28
NR1I3-220ENST00000505005 CHMP7Q8WUX9 453 aaPredicted RBP16.73■□□□□ 0.27
NR1I3-220ENST00000505005 ABCA5Q8WWZ7 1642 aa16.7■□□□□ 0.26
NR1I3-220ENST00000505005 FBLN2P98095 1184 aa16.69■□□□□ 0.26
NR1I3-220ENST00000505005 ERICH3Q5RHP9 1530 aa16.69■□□□□ 0.26
NR1I3-220ENST00000505005 KIF27Q86VH2 1401 aa16.69■□□□□ 0.26
NR1I3-220ENST00000505005 SYNJ2O15056 1496 aa16.67■□□□□ 0.26
NR1I3-220ENST00000505005 PBRM1Q86U86 1689 aa16.67■□□□□ 0.26
NR1I3-220ENST00000505005 SNAPC4Q5SXM2 1469 aa16.67■□□□□ 0.26
NR1I3-220ENST00000505005 TRIM41Q8WV44 630 aa16.65■□□□□ 0.26
NR1I3-220ENST00000505005 FHAD1B1AJZ9 1412 aa16.62■□□□□ 0.25
NR1I3-220ENST00000505005 CHD1O14646 1710 aa16.6■□□□□ 0.25
NR1I3-220ENST00000505005 CUL7Q14999 1698 aa16.54■□□□□ 0.24
NR1I3-220ENST00000505005 ADAMTS12P58397 1594 aa16.53■□□□□ 0.24
NR1I3-220ENST00000505005 GRIN2AQ12879 1464 aa16.53■□□□□ 0.24
NR1I3-220ENST00000505005 IGF1RP08069 1367 aa16.51■□□□□ 0.23
NR1I3-220ENST00000505005 EEA1Q15075 1411 aa16.47■□□□□ 0.23
NR1I3-220ENST00000505005 CARMIL1Q5VZK9 1371 aa16.47■□□□□ 0.23
NR1I3-220ENST00000505005 NUP160Q12769 1436 aa16.46■□□□□ 0.23
NR1I3-220ENST00000505005 CLASP1Q7Z460 1538 aa16.45■□□□□ 0.22
NR1I3-220ENST00000505005 SENP3Q9H4L4 574 aaPredicted RBP16.42■□□□□ 0.22
NR1I3-220ENST00000505005 ARHGEF11O15085 1522 aa16.41■□□□□ 0.22
NR1I3-220ENST00000505005 RIMBP3CA6NJZ7 1639 aa16.38■□□□□ 0.21
NR1I3-220ENST00000505005 RIMBP3BA6NNM3 1639 aa16.38■□□□□ 0.21
NR1I3-220ENST00000505005 RIMBP3Q9UFD9 1639 aa16.38■□□□□ 0.21
NR1I3-220ENST00000505005 RAPGEF2Q9Y4G8 1499 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms