RNA–Protein interactions for RNA: ENST00000504386.1

SKP2-203, Transcript of S-phase kinase associated protein 2, humanhuman

TSL 5

Gene SKP2, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP2-203ENST00000504386 NISCHQ9Y2I1 1504 aa18.73■□□□□ 0.59
SKP2-203ENST00000504386 CCDC180Q9P1Z9 1646 aa16.69■□□□□ 0.26
SKP2-203ENST00000504386 AEBP2Q6ZN18 517 aaPredicted RBP16.63■□□□□ 0.25
SKP2-203ENST00000504386 ABCC9O60706 1549 aa16.24■□□□□ 0.19
SKP2-203ENST00000504386 CHIC1Q5VXU3 224 aa15.94■□□□□ 0.14
SKP2-203ENST00000504386 RB1CC1Q8TDY2 1594 aa15.73■□□□□ 0.11
SKP2-203ENST00000504386 NACADO15069 1562 aa15.72■□□□□ 0.11
SKP2-203ENST00000504386 MYO15BQ96JP2 1530 aa15.67■□□□□ 0.1
SKP2-203ENST00000504386 DCAF8L2P0C7V8 631 aa15.64■□□□□ 0.09
SKP2-203ENST00000504386 ZCCHC6Q5VYS8 1495 aaKnown RBP15.61■□□□□ 0.09
SKP2-203ENST00000504386 DCAF1Q9Y4B6 1507 aa15.57■□□□□ 0.08
SKP2-203ENST00000504386 SHROOM4Q9ULL8 1493 aa15.2■□□□□ 0.02
SKP2-203ENST00000504386 UNC13AQ9UPW8 1703 aa15.17■□□□□ 0.02
SKP2-203ENST00000504386 PABPN1Q86U42 306 aaKnown RBP eCLIP15.15■□□□□ 0.02
SKP2-203ENST00000504386 SCRIBQ14160 1630 aa15.14■□□□□ 0.01
SKP2-203ENST00000504386 BICRAQ9NZM4 1560 aa15.11■□□□□ 0.01
SKP2-203ENST00000504386 DNAJC5BQ9UF47 199 aa14.8□□□□□ -0.04
SKP2-203ENST00000504386 EIF4G1Q04637 1599 aaKnown RBP14.77□□□□□ -0.04
SKP2-203ENST00000504386 CC2D2AQ9P2K1 1620 aa14.69□□□□□ -0.06
SKP2-203ENST00000504386 CECR2Q9BXF3 1484 aa14.64□□□□□ -0.07
SKP2-203ENST00000504386 BAZ1AQ9NRL2 1556 aaPredicted RBP14.57□□□□□ -0.08
SKP2-203ENST00000504386 SMARCA4P51532 1647 aa14.51□□□□□ -0.09
SKP2-203ENST00000504386 SMARCA2P51531 1590 aa14.51□□□□□ -0.09
SKP2-203ENST00000504386 NCAPD3P42695 1498 aa14.49□□□□□ -0.09
SKP2-203ENST00000504386 ATAD2BQ9ULI0 1458 aa14.45□□□□□ -0.1
SKP2-203ENST00000504386 HMGXB3Q12766 1538 aa14.42□□□□□ -0.1
SKP2-203ENST00000504386 PEG3Q9GZU2 1588 aa14.41□□□□□ -0.1
SKP2-203ENST00000504386 BAZ1BQ9UIG0 1483 aaKnown RBP14.38□□□□□ -0.11
SKP2-203ENST00000504386 MROH2BQ7Z745 1585 aa14.37□□□□□ -0.11
SKP2-203ENST00000504386 RSF1Q96T23 1441 aaPredicted RBP14.25□□□□□ -0.13
SKP2-203ENST00000504386 WIZO95785 1651 aa14.19□□□□□ -0.14
SKP2-203ENST00000504386 TOP2AP11388 1531 aaKnown RBP14.15□□□□□ -0.14
SKP2-203ENST00000504386 LAMC3Q9Y6N6 1575 aa14.1□□□□□ -0.15
SKP2-203ENST00000504386 ERCC6Q03468 1493 aa14.1□□□□□ -0.15
SKP2-203ENST00000504386 SENP3Q9H4L4 574 aaPredicted RBP14.08□□□□□ -0.16
SKP2-203ENST00000504386 CADPSQ9ULU8 1353 aa14.07□□□□□ -0.16
SKP2-203ENST00000504386 PDS5BQ9NTI5 1447 aa14.06□□□□□ -0.16
SKP2-203ENST00000504386 NESP48681 1621 aa14.01□□□□□ -0.17
SKP2-203ENST00000504386 PHF23Q9BUL5 403 aaPredicted RBP13.98□□□□□ -0.17
SKP2-203ENST00000504386 CFTRP13569 1480 aa13.97□□□□□ -0.17
SKP2-203ENST00000504386 CUX2O14529 1486 aa13.96□□□□□ -0.17
SKP2-203ENST00000504386 CCDC88BA6NC98 1476 aa13.93□□□□□ -0.18
SKP2-203ENST00000504386 CEP164Q9UPV0 1460 aa13.89□□□□□ -0.19
SKP2-203ENST00000504386 SUPT5HO00267 1087 aaKnown RBP13.89□□□□□ -0.19
SKP2-203ENST00000504386 FANCD2Q9BXW9 1451 aa13.87□□□□□ -0.19
SKP2-203ENST00000504386 MRC2Q9UBG0 1479 aa13.87□□□□□ -0.19
SKP2-203ENST00000504386 KIF21AQ7Z4S6 1674 aa13.84□□□□□ -0.19
SKP2-203ENST00000504386 THOC2Q8NI27 1593 aaKnown RBP13.83□□□□□ -0.2
SKP2-203ENST00000504386 PRDM2Q13029 1718 aa13.81□□□□□ -0.2
SKP2-203ENST00000504386 WDR62O43379 1518 aa13.79□□□□□ -0.2
SKP2-203ENST00000504386 ABCC8Q09428 1581 aa13.77□□□□□ -0.21
SKP2-203ENST00000504386 URB2Q14146 1524 aaKnown RBP13.68□□□□□ -0.22
SKP2-203ENST00000504386 DNMBPQ6XZF7 1577 aa13.65□□□□□ -0.22
SKP2-203ENST00000504386 TOPBP1Q92547 1522 aa13.64□□□□□ -0.23
SKP2-203ENST00000504386 IFT140Q96RY7 1462 aa13.61□□□□□ -0.23
SKP2-203ENST00000504386 POLA1P09884 1462 aaPredicted RBP13.52□□□□□ -0.25
SKP2-203ENST00000504386 SOGA1O94964 1423 aa13.5□□□□□ -0.25
SKP2-203ENST00000504386 CUX1P39880 1505 aa13.49□□□□□ -0.25
SKP2-203ENST00000504386 WRNQ14191 1432 aaPredicted RBP eCLIP13.49□□□□□ -0.25
SKP2-203ENST00000504386 WDR97A6NE52 1622 aa13.49□□□□□ -0.25
SKP2-203ENST00000504386 FGD5Q6ZNL6 1462 aa13.48□□□□□ -0.25
SKP2-203ENST00000504386 DNAJC5Q9H3Z4 198 aa13.47□□□□□ -0.25
SKP2-203ENST00000504386 TARBP1Q13395 1621 aaKnown RBP13.44□□□□□ -0.26
SKP2-203ENST00000504386 ZNF608Q9ULD9 1512 aaPredicted RBP13.43□□□□□ -0.26
SKP2-203ENST00000504386 TOP2BQ02880 1626 aa13.42□□□□□ -0.26
SKP2-203ENST00000504386 EIF4G3O43432 1585 aaKnown RBP13.41□□□□□ -0.26
SKP2-203ENST00000504386 BIVM-ERCC5R4GMW8 1640 aa13.41□□□□□ -0.26
SKP2-203ENST00000504386 RAD54L2Q9Y4B4 1467 aa13.41□□□□□ -0.26
SKP2-203ENST00000504386 ABCA10Q8WWZ4 1543 aa13.39□□□□□ -0.27
SKP2-203ENST00000504386 OSCARQ8IYS5 282 aa13.39□□□□□ -0.27
SKP2-203ENST00000504386 AQRO60306 1485 aaKnown RBP eCLIP13.38□□□□□ -0.274e-6■■■■□ 24.8
SKP2-203ENST00000504386 TDRD9Q8NDG6 1382 aaKnown RBP13.38□□□□□ -0.27
SKP2-203ENST00000504386 GRIN2BQ13224 1484 aa13.37□□□□□ -0.27
SKP2-203ENST00000504386 SYNJ1O43426 1573 aa13.35□□□□□ -0.27
SKP2-203ENST00000504386 MAGI1Q96QZ7 1491 aaPredicted RBP13.35□□□□□ -0.27
SKP2-203ENST00000504386 GAPVD1Q14C86 1478 aa13.34□□□□□ -0.27
SKP2-203ENST00000504386 FOXD1Q16676 465 aa13.3□□□□□ -0.28
SKP2-203ENST00000504386 ABCA5Q8WWZ7 1642 aa13.29□□□□□ -0.28
SKP2-203ENST00000504386 CHMP7Q8WUX9 453 aaPredicted RBP13.29□□□□□ -0.28
SKP2-203ENST00000504386 SNAPC4Q5SXM2 1469 aa13.29□□□□□ -0.28
SKP2-203ENST00000504386 FBLN2P98095 1184 aa13.28□□□□□ -0.28
SKP2-203ENST00000504386 SYNJ2O15056 1496 aa13.27□□□□□ -0.29
SKP2-203ENST00000504386 ERICH3Q5RHP9 1530 aa13.26□□□□□ -0.29
SKP2-203ENST00000504386 KIF27Q86VH2 1401 aa13.25□□□□□ -0.29
SKP2-203ENST00000504386 PBRM1Q86U86 1689 aa13.24□□□□□ -0.29
SKP2-203ENST00000504386 FHAD1B1AJZ9 1412 aa13.22□□□□□ -0.29
SKP2-203ENST00000504386 CHD1O14646 1710 aa13.2□□□□□ -0.3
SKP2-203ENST00000504386 TRIM41Q8WV44 630 aa13.2□□□□□ -0.3
SKP2-203ENST00000504386 ADAMTS12P58397 1594 aa13.18□□□□□ -0.3
SKP2-203ENST00000504386 GRIN2AQ12879 1464 aa13.16□□□□□ -0.3
SKP2-203ENST00000504386 CUL7Q14999 1698 aa13.13□□□□□ -0.31
SKP2-203ENST00000504386 IGF1RP08069 1367 aa13.12□□□□□ -0.31
SKP2-203ENST00000504386 NUP160Q12769 1436 aa13.11□□□□□ -0.31
SKP2-203ENST00000504386 CLASP1Q7Z460 1538 aa13.1□□□□□ -0.31
SKP2-203ENST00000504386 ARHGEF11O15085 1522 aa13.09□□□□□ -0.31
SKP2-203ENST00000504386 CARMIL1Q5VZK9 1371 aa13.08□□□□□ -0.31
SKP2-203ENST00000504386 POTEDQ86YR6 584 aa13.07□□□□□ -0.32
SKP2-203ENST00000504386 EEA1Q15075 1411 aa13.06□□□□□ -0.32
SKP2-203ENST00000504386 RIMBP3CA6NJZ7 1639 aa13.06□□□□□ -0.32
SKP2-203ENST00000504386 RIMBP3BA6NNM3 1639 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms