RNA–Protein interactions for RNA: ENST00000503827.5

PDLIM7-210, Transcript of PDZ and LIM domain 7, humanhuman

TSL 5

Gene PDLIM7, Length 451 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-210ENST00000503827 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.76■□□□□ 0.276e-7■■■■■ 67.2
PDLIM7-210ENST00000503827 HNRNPKP61978 463 aaKnown RBP eCLIP16.31■□□□□ 0.21e-16■■■■■ 57.8
PDLIM7-210ENST00000503827 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.44□□□□□ -0.17e-8■■■■■ 55
PDLIM7-210ENST00000503827 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.73■□□□□ 0.752e-6■■■■■ 52.9
PDLIM7-210ENST00000503827 SF3A3Q12874 501 aaKnown RBP eCLIP12.35□□□□□ -0.432e-7■■■■■ 49.4
PDLIM7-210ENST00000503827 SF3B1O75533 1304 aaKnown RBP eCLIP17.66■□□□□ 0.424e-7■■■■■ 44.1
PDLIM7-210ENST00000503827 PCBP1Q15365 356 aaKnown RBP eCLIP17.65■□□□□ 0.424e-10■■■■■ 32.7
PDLIM7-210ENST00000503827 HNRNPMP52272 730 aaKnown RBP eCLIP26.06■■□□□ 1.764e-8■■■■■ 27.6
PDLIM7-210ENST00000503827 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.8■■□□□ 1.723e-6■■■■□ 26.4
PDLIM7-210ENST00000503827 AQRO60306 1485 aaKnown RBP eCLIP29.98■■■□□ 2.394e-10■■■■□ 25.6
PDLIM7-210ENST00000503827 SF3B4Q15427 424 aaKnown RBP eCLIP14.58□□□□□ -0.087e-8■■■■□ 22.3
PDLIM7-210ENST00000503827 EFTUD2Q15029 972 aaKnown RBP eCLIP14.49□□□□□ -0.097e-13■■■■□ 21.1
PDLIM7-210ENST00000503827 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.95■□□□□ 0.788e-9■■■■□ 19.6
PDLIM7-210ENST00000503827 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.27□□□□□ -0.132e-7■■■□□ 19.1
PDLIM7-210ENST00000503827 PCBP2Q15366 365 aaKnown RBP eCLIP14.75□□□□□ -0.053e-6■■■□□ 18.8
PDLIM7-210ENST00000503827 ZRANB2O95218 330 aaKnown RBP eCLIP15.09■□□□□ 0.012e-6■■■□□ 18.6
PDLIM7-210ENST00000503827 RBFOX2O43251 390 aaKnown RBP eCLIP11.3□□□□□ -0.68e-13■■■□□ 18.5
PDLIM7-210ENST00000503827 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.95■□□□□ 0.624e-11■■■□□ 18.5
PDLIM7-210ENST00000503827 PPIGQ13427 754 aaKnown RBP eCLIP19.3■□□□□ 0.681e-7■■■□□ 16.8
PDLIM7-210ENST00000503827 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.32■□□□□ 0.689e-10■■■□□ 15.9
PDLIM7-210ENST00000503827 U2AF2P26368 475 aaKnown RBP eCLIP17.19■□□□□ 0.347e-7■■■□□ 15.8
PDLIM7-210ENST00000503827 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.94■■□□□ 1.92e-7■■□□□ 14.3
PDLIM7-210ENST00000503827 U2AF1Q01081 240 aaKnown RBP eCLIP21.03■□□□□ 0.964e-6■■□□□ 12.1
PDLIM7-210ENST00000503827 AARSP49588 968 aaKnown RBP eCLIP17.19■□□□□ 0.344e-9■■□□□ 11.9
PDLIM7-210ENST00000503827 TIA1P31483 386 aaKnown RBP eCLIP13.85□□□□□ -0.191e-6■□□□□ 11.1
PDLIM7-210ENST00000503827 PUM1Q14671 1186 aaKnown RBP eCLIP18.13■□□□□ 0.493e-7■□□□□ 10.6
PDLIM7-210ENST00000503827 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.9□□□□□ -0.026e-7■□□□□ 9.2
PDLIM7-210ENST00000503827 NCBP2P52298 156 aaKnown RBP eCLIP13.9□□□□□ -0.182e-6■□□□□ 8.3
Retrieved 28 of 28 RNA–protein pairs in 6.5 ms