RNA–Protein interactions for RNA: ENST00000503401.1

SCLT1-205, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene SCLT1, Length 1,604 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-205ENST00000503401 NISCHQ9Y2I1 1504 aa39.63■■■■□ 3.93
SCLT1-205ENST00000503401 CCDC180Q9P1Z9 1646 aa35.09■■■■□ 3.21
SCLT1-205ENST00000503401 ABCC9O60706 1549 aa34.2■■■■□ 3.06
SCLT1-205ENST00000503401 DCAF8L2P0C7V8 631 aa33.12■■■□□ 2.89
SCLT1-205ENST00000503401 ZCCHC6Q5VYS8 1495 aaKnown RBP33.06■■■□□ 2.88
SCLT1-205ENST00000503401 NACADO15069 1562 aa32.92■■■□□ 2.86
SCLT1-205ENST00000503401 RB1CC1Q8TDY2 1594 aa32.92■■■□□ 2.86
SCLT1-205ENST00000503401 MYO15BQ96JP2 1530 aa32.75■■■□□ 2.83
SCLT1-205ENST00000503401 DCAF1Q9Y4B6 1507 aa32.73■■■□□ 2.83
SCLT1-205ENST00000503401 UNC13AQ9UPW8 1703 aa32.29■■■□□ 2.76
SCLT1-205ENST00000503401 SCRIBQ14160 1630 aa32.15■■■□□ 2.74
SCLT1-205ENST00000503401 PABPN1Q86U42 306 aaKnown RBP eCLIP32.02■■■□□ 2.72
SCLT1-205ENST00000503401 BICRAQ9NZM4 1560 aa31.96■■■□□ 2.71
SCLT1-205ENST00000503401 SHROOM4Q9ULL8 1493 aa31.59■■■□□ 2.65
SCLT1-205ENST00000503401 DNAJC5BQ9UF47 199 aa31.18■■■□□ 2.58
SCLT1-205ENST00000503401 EIF4G1Q04637 1599 aaKnown RBP31.09■■■□□ 2.57
SCLT1-205ENST00000503401 CC2D2AQ9P2K1 1620 aa30.93■■■□□ 2.54
SCLT1-205ENST00000503401 CECR2Q9BXF3 1484 aa30.9■■■□□ 2.54
SCLT1-205ENST00000503401 SMARCA4P51532 1647 aa30.72■■■□□ 2.51
SCLT1-205ENST00000503401 BAZ1AQ9NRL2 1556 aaPredicted RBP30.68■■■□□ 2.5
SCLT1-205ENST00000503401 MROH2BQ7Z745 1585 aa30.59■■■□□ 2.49
SCLT1-205ENST00000503401 ATAD2BQ9ULI0 1458 aa30.47■■■□□ 2.47
SCLT1-205ENST00000503401 SMARCA2P51531 1590 aa30.42■■■□□ 2.46
SCLT1-205ENST00000503401 NCAPD3P42695 1498 aa30.38■■■□□ 2.45
SCLT1-205ENST00000503401 PEG3Q9GZU2 1588 aa30.35■■■□□ 2.45
SCLT1-205ENST00000503401 RSF1Q96T23 1441 aaPredicted RBP30.31■■■□□ 2.44
SCLT1-205ENST00000503401 WIZO95785 1651 aa30.3■■■□□ 2.44
SCLT1-205ENST00000503401 HMGXB3Q12766 1538 aa30.25■■■□□ 2.43
SCLT1-205ENST00000503401 BAZ1BQ9UIG0 1483 aaKnown RBP30.24■■■□□ 2.43
SCLT1-205ENST00000503401 TOP2AP11388 1531 aaKnown RBP29.93■■■□□ 2.38
SCLT1-205ENST00000503401 SUPT5HO00267 1087 aaKnown RBP29.81■■■□□ 2.36
SCLT1-205ENST00000503401 NESP48681 1621 aa29.68■■■□□ 2.34
SCLT1-205ENST00000503401 CCDC88BA6NC98 1476 aa29.6■■■□□ 2.33
SCLT1-205ENST00000503401 LAMC3Q9Y6N6 1575 aa29.55■■■□□ 2.32
SCLT1-205ENST00000503401 CADPSQ9ULU8 1353 aa29.53■■■□□ 2.32
SCLT1-205ENST00000503401 ERCC6Q03468 1493 aa29.42■■■□□ 2.3
SCLT1-205ENST00000503401 CFTRP13569 1480 aa29.4■■■□□ 2.3
SCLT1-205ENST00000503401 KIF21AQ7Z4S6 1674 aa29.34■■■□□ 2.29
SCLT1-205ENST00000503401 PDS5BQ9NTI5 1447 aa29.34■■■□□ 2.29
SCLT1-205ENST00000503401 PRDM2Q13029 1718 aa29.25■■■□□ 2.27
SCLT1-205ENST00000503401 FANCD2Q9BXW9 1451 aa29.22■■■□□ 2.27
SCLT1-205ENST00000503401 CEP164Q9UPV0 1460 aa29.15■■■□□ 2.26
SCLT1-205ENST00000503401 THOC2Q8NI27 1593 aaKnown RBP29.14■■■□□ 2.25
SCLT1-205ENST00000503401 MRC2Q9UBG0 1479 aa29.04■■■□□ 2.24
SCLT1-205ENST00000503401 CUX2O14529 1486 aa28.95■■■□□ 2.23
SCLT1-205ENST00000503401 WDR62O43379 1518 aa28.94■■■□□ 2.22
SCLT1-205ENST00000503401 URB2Q14146 1524 aaKnown RBP28.93■■■□□ 2.22
SCLT1-205ENST00000503401 TOPBP1Q92547 1522 aa28.78■■■□□ 2.2
SCLT1-205ENST00000503401 DNMBPQ6XZF7 1577 aa28.75■■■□□ 2.19
SCLT1-205ENST00000503401 ABCC8Q09428 1581 aa28.72■■■□□ 2.19
SCLT1-205ENST00000503401 CUX1P39880 1505 aa28.68■■■□□ 2.18
SCLT1-205ENST00000503401 POLA1P09884 1462 aaPredicted RBP28.56■■■□□ 2.16
SCLT1-205ENST00000503401 WRNQ14191 1432 aaPredicted RBP eCLIP28.56■■■□□ 2.16
SCLT1-205ENST00000503401 FGD5Q6ZNL6 1462 aa28.53■■■□□ 2.16
SCLT1-205ENST00000503401 SYNJ1O43426 1573 aa28.53■■■□□ 2.16
SCLT1-205ENST00000503401 IFT140Q96RY7 1462 aa28.5■■■□□ 2.15
SCLT1-205ENST00000503401 RAD54L2Q9Y4B4 1467 aa28.47■■■□□ 2.15
SCLT1-205ENST00000503401 TOP2BQ02880 1626 aa28.47■■■□□ 2.15
SCLT1-205ENST00000503401 BIVM-ERCC5R4GMW8 1640 aa28.47■■■□□ 2.15
SCLT1-205ENST00000503401 TARBP1Q13395 1621 aaKnown RBP28.45■■■□□ 2.15
SCLT1-205ENST00000503401 SOGA1O94964 1423 aa28.43■■■□□ 2.14
SCLT1-205ENST00000503401 ZNF608Q9ULD9 1512 aaPredicted RBP28.43■■■□□ 2.14
SCLT1-205ENST00000503401 EIF4G3O43432 1585 aaKnown RBP28.32■■■□□ 2.12
SCLT1-205ENST00000503401 AQRO60306 1485 aaKnown RBP eCLIP28.3■■■□□ 2.12
SCLT1-205ENST00000503401 WDR97A6NE52 1622 aa28.29■■■□□ 2.12
SCLT1-205ENST00000503401 TDRD9Q8NDG6 1382 aaKnown RBP28.28■■■□□ 2.12
SCLT1-205ENST00000503401 ABCA10Q8WWZ4 1543 aa28.23■■■□□ 2.11
SCLT1-205ENST00000503401 ABCA5Q8WWZ7 1642 aa28.12■■■□□ 2.09
SCLT1-205ENST00000503401 GAPVD1Q14C86 1478 aa28.11■■■□□ 2.09
SCLT1-205ENST00000503401 TRIM41Q8WV44 630 aa28.08■■■□□ 2.09
SCLT1-205ENST00000503401 PBRM1Q86U86 1689 aa28.08■■■□□ 2.09
SCLT1-205ENST00000503401 GRIN2BQ13224 1484 aa28.05■■■□□ 2.08
SCLT1-205ENST00000503401 SNAPC4Q5SXM2 1469 aa28.02■■■□□ 2.08
SCLT1-205ENST00000503401 MAGI1Q96QZ7 1491 aaPredicted RBP27.94■■■□□ 2.06
SCLT1-205ENST00000503401 CHD1O14646 1710 aa27.94■■■□□ 2.06
SCLT1-205ENST00000503401 KIF27Q86VH2 1401 aa27.93■■■□□ 2.06
SCLT1-205ENST00000503401 FBLN2P98095 1184 aa27.92■■■□□ 2.06
SCLT1-205ENST00000503401 CHIC1Q5VXU3 224 aa27.92■■■□□ 2.06
SCLT1-205ENST00000503401 ERICH3Q5RHP9 1530 aa27.89■■■□□ 2.05
SCLT1-205ENST00000503401 RUSC2Q8N2Y8 1516 aa27.85■■■□□ 2.05
SCLT1-205ENST00000503401 ADAMTS12P58397 1594 aa27.85■■■□□ 2.05
SCLT1-205ENST00000503401 SYNJ2O15056 1496 aa27.84■■■□□ 2.05
SCLT1-205ENST00000503401 OSCARQ8IYS5 282 aa27.84■■■□□ 2.05
SCLT1-205ENST00000503401 CHMP7Q8WUX9 453 aaPredicted RBP27.84■■■□□ 2.05
SCLT1-205ENST00000503401 DNAJC5Q9H3Z4 198 aa27.81■■■□□ 2.04
SCLT1-205ENST00000503401 IGF1RP08069 1367 aa27.8■■■□□ 2.04
SCLT1-205ENST00000503401 FHAD1B1AJZ9 1412 aa27.77■■■□□ 2.04
SCLT1-205ENST00000503401 GRIN2AQ12879 1464 aa27.71■■■□□ 2.03
SCLT1-205ENST00000503401 CUL7Q14999 1698 aa27.69■■■□□ 2.02
SCLT1-205ENST00000503401 CARMIL1Q5VZK9 1371 aa27.64■■■□□ 2.02
SCLT1-205ENST00000503401 CEP170Q5SW79 1584 aa27.6■■■□□ 2.01
SCLT1-205ENST00000503401 FAM9AQ8IZU1 332 aaPredicted RBP27.58■■■□□ 2.01
SCLT1-205ENST00000503401 CLASP1Q7Z460 1538 aa27.58■■■□□ 2.01
SCLT1-205ENST00000503401 NUP160Q12769 1436 aa27.56■■■□□ 2
SCLT1-205ENST00000503401 EEA1Q15075 1411 aa27.51■■□□□ 1.99
SCLT1-205ENST00000503401 CSRNP3Q8WYN3 585 aa27.5■■□□□ 1.99
SCLT1-205ENST00000503401 RAPGEF2Q9Y4G8 1499 aa27.5■■□□□ 1.99
SCLT1-205ENST00000503401 PRXQ9BXM0 1461 aa27.45■■□□□ 1.99
SCLT1-205ENST00000503401 ARHGEF11O15085 1522 aa27.41■■□□□ 1.98
SCLT1-205ENST00000503401 RIMBP3CA6NJZ7 1639 aa27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms