RNA–Protein interactions for RNA: ENST00000502714.1

YIPF3-210, Transcript of Yip1 domain family member 3, humanhuman

TSL 4

Gene YIPF3, Length 795 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF3-210ENST00000502714 NISCHQ9Y2I1 1504 aa28.48■■■□□ 2.15
YIPF3-210ENST00000502714 CCDC180Q9P1Z9 1646 aa25.22■■□□□ 1.63
YIPF3-210ENST00000502714 ABCC9O60706 1549 aa24.39■■□□□ 1.49
YIPF3-210ENST00000502714 ZCCHC6Q5VYS8 1495 aaKnown RBP23.8■■□□□ 1.4
YIPF3-210ENST00000502714 DCAF8L2P0C7V8 631 aa23.71■■□□□ 1.39
YIPF3-210ENST00000502714 NACADO15069 1562 aa23.66■■□□□ 1.38
YIPF3-210ENST00000502714 RB1CC1Q8TDY2 1594 aa23.62■■□□□ 1.37
YIPF3-210ENST00000502714 MYO15BQ96JP2 1530 aa23.62■■□□□ 1.37
YIPF3-210ENST00000502714 DCAF1Q9Y4B6 1507 aa23.61■■□□□ 1.37
YIPF3-210ENST00000502714 SCRIBQ14160 1630 aa23■■□□□ 1.27
YIPF3-210ENST00000502714 UNC13AQ9UPW8 1703 aa22.98■■□□□ 1.27
YIPF3-210ENST00000502714 PABPN1Q86U42 306 aaKnown RBP eCLIP22.83■■□□□ 1.25
YIPF3-210ENST00000502714 BICRAQ9NZM4 1560 aa22.83■■□□□ 1.25
YIPF3-210ENST00000502714 SHROOM4Q9ULL8 1493 aa22.73■■□□□ 1.23
YIPF3-210ENST00000502714 EIF4G1Q04637 1599 aaKnown RBP22.25■■□□□ 1.15
YIPF3-210ENST00000502714 CECR2Q9BXF3 1484 aa22.12■■□□□ 1.13
YIPF3-210ENST00000502714 BAZ1AQ9NRL2 1556 aaPredicted RBP22.09■■□□□ 1.13
YIPF3-210ENST00000502714 DNAJC5BQ9UF47 199 aa22.08■■□□□ 1.13
YIPF3-210ENST00000502714 CC2D2AQ9P2K1 1620 aa22.06■■□□□ 1.12
YIPF3-210ENST00000502714 SMARCA4P51532 1647 aa22.04■■□□□ 1.12
YIPF3-210ENST00000502714 MROH2BQ7Z745 1585 aa21.93■■□□□ 1.1
YIPF3-210ENST00000502714 SMARCA2P51531 1590 aa21.88■■□□□ 1.09
YIPF3-210ENST00000502714 ATAD2BQ9ULI0 1458 aa21.86■■□□□ 1.09
YIPF3-210ENST00000502714 PEG3Q9GZU2 1588 aa21.83■■□□□ 1.09
YIPF3-210ENST00000502714 NCAPD3P42695 1498 aa21.82■■□□□ 1.08
YIPF3-210ENST00000502714 RSF1Q96T23 1441 aaPredicted RBP21.8■■□□□ 1.08
YIPF3-210ENST00000502714 HMGXB3Q12766 1538 aa21.75■■□□□ 1.07
YIPF3-210ENST00000502714 BAZ1BQ9UIG0 1483 aaKnown RBP21.73■■□□□ 1.07
YIPF3-210ENST00000502714 WIZO95785 1651 aa21.69■■□□□ 1.06
YIPF3-210ENST00000502714 TOP2AP11388 1531 aaKnown RBP21.54■■□□□ 1.04
YIPF3-210ENST00000502714 SUPT5HO00267 1087 aaKnown RBP21.46■■□□□ 1.03
YIPF3-210ENST00000502714 CCDC88BA6NC98 1476 aa21.26■□□□□ 0.99
YIPF3-210ENST00000502714 LAMC3Q9Y6N6 1575 aa21.21■□□□□ 0.99
YIPF3-210ENST00000502714 CADPSQ9ULU8 1353 aa21.21■□□□□ 0.99
YIPF3-210ENST00000502714 NESP48681 1621 aa21.16■□□□□ 0.98
YIPF3-210ENST00000502714 CFTRP13569 1480 aa21.13■□□□□ 0.97
YIPF3-210ENST00000502714 PDS5BQ9NTI5 1447 aa21.08■□□□□ 0.97
YIPF3-210ENST00000502714 ERCC6Q03468 1493 aa21.06■□□□□ 0.96
YIPF3-210ENST00000502714 FANCD2Q9BXW9 1451 aa20.96■□□□□ 0.95
YIPF3-210ENST00000502714 PRDM2Q13029 1718 aa20.95■□□□□ 0.94
YIPF3-210ENST00000502714 CEP164Q9UPV0 1460 aa20.93■□□□□ 0.94
YIPF3-210ENST00000502714 KIF21AQ7Z4S6 1674 aa20.92■□□□□ 0.94
YIPF3-210ENST00000502714 MRC2Q9UBG0 1479 aa20.83■□□□□ 0.93
YIPF3-210ENST00000502714 THOC2Q8NI27 1593 aaKnown RBP20.8■□□□□ 0.92
YIPF3-210ENST00000502714 WDR62O43379 1518 aa20.73■□□□□ 0.91
YIPF3-210ENST00000502714 CUX2O14529 1486 aa20.73■□□□□ 0.91
YIPF3-210ENST00000502714 ABCC8Q09428 1581 aa20.71■□□□□ 0.91
YIPF3-210ENST00000502714 URB2Q14146 1524 aaKnown RBP20.7■□□□□ 0.9
YIPF3-210ENST00000502714 DNMBPQ6XZF7 1577 aa20.65■□□□□ 0.9
YIPF3-210ENST00000502714 TOPBP1Q92547 1522 aa20.64■□□□□ 0.9
YIPF3-210ENST00000502714 WRNQ14191 1432 aaPredicted RBP eCLIP20.58■□□□□ 0.88
YIPF3-210ENST00000502714 CUX1P39880 1505 aa20.57■□□□□ 0.88
YIPF3-210ENST00000502714 POLA1P09884 1462 aaPredicted RBP20.49■□□□□ 0.87
YIPF3-210ENST00000502714 TOP2BQ02880 1626 aa20.48■□□□□ 0.87
YIPF3-210ENST00000502714 FGD5Q6ZNL6 1462 aa20.48■□□□□ 0.87
YIPF3-210ENST00000502714 IFT140Q96RY7 1462 aa20.47■□□□□ 0.87
YIPF3-210ENST00000502714 SYNJ1O43426 1573 aa20.46■□□□□ 0.87
YIPF3-210ENST00000502714 BIVM-ERCC5R4GMW8 1640 aa20.46■□□□□ 0.87
YIPF3-210ENST00000502714 SOGA1O94964 1423 aa20.42■□□□□ 0.86
YIPF3-210ENST00000502714 TARBP1Q13395 1621 aaKnown RBP20.37■□□□□ 0.85
YIPF3-210ENST00000502714 RAD54L2Q9Y4B4 1467 aa20.37■□□□□ 0.85
YIPF3-210ENST00000502714 ABCA10Q8WWZ4 1543 aa20.3■□□□□ 0.84
YIPF3-210ENST00000502714 ZNF608Q9ULD9 1512 aaPredicted RBP20.3■□□□□ 0.84
YIPF3-210ENST00000502714 WDR97A6NE52 1622 aa20.29■□□□□ 0.84
YIPF3-210ENST00000502714 TRIM41Q8WV44 630 aa20.29■□□□□ 0.84
YIPF3-210ENST00000502714 EIF4G3O43432 1585 aaKnown RBP20.25■□□□□ 0.83
YIPF3-210ENST00000502714 TDRD9Q8NDG6 1382 aaKnown RBP20.25■□□□□ 0.83
YIPF3-210ENST00000502714 AQRO60306 1485 aaKnown RBP eCLIP20.24■□□□□ 0.831e-8■■■□□ 18.9
YIPF3-210ENST00000502714 GAPVD1Q14C86 1478 aa20.19■□□□□ 0.82
YIPF3-210ENST00000502714 ABCA5Q8WWZ7 1642 aa20.17■□□□□ 0.82
YIPF3-210ENST00000502714 CHIC1Q5VXU3 224 aa20.17■□□□□ 0.82
YIPF3-210ENST00000502714 GRIN2BQ13224 1484 aa20.17■□□□□ 0.82
YIPF3-210ENST00000502714 KIF27Q86VH2 1401 aa20.15■□□□□ 0.82
YIPF3-210ENST00000502714 MAGI1Q96QZ7 1491 aaPredicted RBP20.09■□□□□ 0.81
YIPF3-210ENST00000502714 PBRM1Q86U86 1689 aa20.09■□□□□ 0.81
YIPF3-210ENST00000502714 SNAPC4Q5SXM2 1469 aa20.08■□□□□ 0.81
YIPF3-210ENST00000502714 ERICH3Q5RHP9 1530 aa20.07■□□□□ 0.8
YIPF3-210ENST00000502714 SYNJ2O15056 1496 aa19.99■□□□□ 0.79
YIPF3-210ENST00000502714 IGF1RP08069 1367 aa19.98■□□□□ 0.79
YIPF3-210ENST00000502714 FBLN2P98095 1184 aa19.98■□□□□ 0.79
YIPF3-210ENST00000502714 CHMP7Q8WUX9 453 aaPredicted RBP19.98■□□□□ 0.79
YIPF3-210ENST00000502714 FHAD1B1AJZ9 1412 aa19.98■□□□□ 0.79
YIPF3-210ENST00000502714 ADAMTS12P58397 1594 aa19.97■□□□□ 0.79
YIPF3-210ENST00000502714 EEA1Q15075 1411 aa19.96■□□□□ 0.79
YIPF3-210ENST00000502714 RUSC2Q8N2Y8 1516 aa19.95■□□□□ 0.78
YIPF3-210ENST00000502714 CUL7Q14999 1698 aa19.94■□□□□ 0.78
YIPF3-210ENST00000502714 OSCARQ8IYS5 282 aa19.92■□□□□ 0.78
YIPF3-210ENST00000502714 CHD1O14646 1710 aa19.91■□□□□ 0.78
YIPF3-210ENST00000502714 CARMIL1Q5VZK9 1371 aa19.9■□□□□ 0.78
YIPF3-210ENST00000502714 GRIN2AQ12879 1464 aa19.9■□□□□ 0.78
YIPF3-210ENST00000502714 CSRNP3Q8WYN3 585 aa19.85■□□□□ 0.77
YIPF3-210ENST00000502714 FAM9AQ8IZU1 332 aaPredicted RBP19.82■□□□□ 0.76
YIPF3-210ENST00000502714 RAPGEF2Q9Y4G8 1499 aa19.81■□□□□ 0.76
YIPF3-210ENST00000502714 PRXQ9BXM0 1461 aa19.79■□□□□ 0.76
YIPF3-210ENST00000502714 NUP160Q12769 1436 aa19.79■□□□□ 0.76
YIPF3-210ENST00000502714 CEP170Q5SW79 1584 aa19.74■□□□□ 0.75
YIPF3-210ENST00000502714 DNAJC5Q9H3Z4 198 aa19.74■□□□□ 0.75
YIPF3-210ENST00000502714 CLASP1Q7Z460 1538 aa19.73■□□□□ 0.75
YIPF3-210ENST00000502714 KIF21BO75037 1637 aa19.69■□□□□ 0.74
YIPF3-210ENST00000502714 KIAA0586Q9BVV6 1533 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms