RNA–Protein interactions for RNA: ENST00000501038.6

PLXND1-202, Transcript of plexin D1, humanhuman

TSL 1 (best)

Gene PLXND1, Length 1,633 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PLXND1-202ENST00000501038 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.67■□□□□ 0.91e-18■■■□□ 18.3
PLXND1-202ENST00000501038 DDX3XO00571 662 aaKnown RBP eCLIP20.11■□□□□ 0.812e-16■□□□□ 10.3
PLXND1-202ENST00000501038 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.22■□□□□ 0.676e-15■■■■□ 19.5
PLXND1-202ENST00000501038 EIF3HO15372 352 aaKnown RBP eCLIP19.25■□□□□ 0.674e-14■■■■■ 61.5
PLXND1-202ENST00000501038 LARP4Q71RC2 724 aaKnown RBP eCLIP18.3■□□□□ 0.521e-11■■□□□ 12.4
PLXND1-202ENST00000501038 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.82■□□□□ 0.443e-10■■■□□ 15.7
PLXND1-202ENST00000501038 PABPC4Q13310 644 aaKnown RBP eCLIP20.65■□□□□ 0.96e-10■■■■□ 20.9
PLXND1-202ENST00000501038 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.49□□□□□ -0.098e-10■■■■□ 20.2
PLXND1-202ENST00000501038 AQRO60306 1485 aaKnown RBP eCLIP28.61■■■□□ 2.179e-10■■■■□ 21
PLXND1-202ENST00000501038 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.1■□□□□ 0.653e-9■□□□□ 10.1
PLXND1-202ENST00000501038 PRPF4O43172 522 aaKnown RBP eCLIP19.04■□□□□ 0.643e-9■■■■□ 20.4
PLXND1-202ENST00000501038 EFTUD2Q15029 972 aaKnown RBP eCLIP19.11■□□□□ 0.655e-9■■■■□ 24
PLXND1-202ENST00000501038 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.53■□□□□ 0.244e-8■■■□□ 15.1
PLXND1-202ENST00000501038 PCBP2Q15366 365 aaKnown RBP eCLIP18.3■□□□□ 0.526e-8■□□□□ 10.7
PLXND1-202ENST00000501038 UPF1Q92900 1129 aaKnown RBP eCLIP20.95■□□□□ 0.948e-8■■■■■ 32.8
PLXND1-202ENST00000501038 EIF3DO15371 548 aaKnown RBP eCLIP20.5■□□□□ 0.872e-7■□□□□ 8.1
PLXND1-202ENST00000501038 RBM15Q96T37 977 aaKnown RBP eCLIP19.3■□□□□ 0.686e-7■■■■□ 23.8
PLXND1-202ENST00000501038 TIAL1Q01085 375 aaKnown RBP eCLIP18.54■□□□□ 0.568e-7■□□□□ 8.1
PLXND1-202ENST00000501038 AKAP1Q92667 903 aaKnown RBP eCLIP16.18■□□□□ 0.189e-7■□□□□ 11.3
PLXND1-202ENST00000501038 GRSF1Q12849 480 aaKnown RBP eCLIP17.97■□□□□ 0.479e-7■■□□□ 13.9
PLXND1-202ENST00000501038 LSM11P83369 360 aaKnown RBP eCLIP17.22■□□□□ 0.351e-6■□□□□ 8.9
PLXND1-202ENST00000501038 METAP2P50579 478 aaKnown RBP eCLIP21.74■■□□□ 1.071e-6■■■■■ 27.4
PLXND1-202ENST00000501038 SUB1P53999 127 aaKnown RBP eCLIP14.91□□□□□ -0.021e-6■■■■■ 30.8
PLXND1-202ENST00000501038 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.71■□□□□ 0.582e-6■■□□□ 12.6
PLXND1-202ENST00000501038 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.18■■□□□ 1.143e-6■■■■■ 39.5
PLXND1-202ENST00000501038 DDX6P26196 483 aaKnown RBP eCLIP18.64■□□□□ 0.576e-6■■■■□ 19.3
PLXND1-202ENST00000501038 SF3B1O75533 1304 aaKnown RBP eCLIP19.23■□□□□ 0.678e-6■■■■■ 107
Retrieved 27 of 27 RNA–protein pairs in 6.4 ms