RNA–Protein interactions for RNA: ENST00000498678.5

HOXB3-212, Transcript of homeobox B3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HOXB3, Length 2,196 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXB3-212ENST00000498678 UTP3Q9NQZ2 479 aaKnown RBP eCLIP28.16■■■□□ 2.14e-7■■■■■ 165.8
HOXB3-212ENST00000498678 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP25.01■■□□□ 1.593e-8■■■■■ 116
HOXB3-212ENST00000498678 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP27.24■■□□□ 1.953e-7■■■■■ 68.6
HOXB3-212ENST00000498678 SF3B1O75533 1304 aaKnown RBP eCLIP27.14■■□□□ 1.947e-8■■■■■ 58.7
HOXB3-212ENST00000498678 PTBP1P26599 531 aaKnown RBP eCLIP22.81■■□□□ 1.243e-7■■■■■ 51.9
HOXB3-212ENST00000498678 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP39.17■■■■□ 3.864e-7■■■■■ 39.7
HOXB3-212ENST00000498678 DHX30Q7L2E3 1194 aaKnown RBP eCLIP28.91■■■□□ 2.223e-6■■■■■ 37.6
HOXB3-212ENST00000498678 TARDBPQ13148 414 aaKnown RBP eCLIP24.05■■□□□ 1.448e-7■■■■■ 37.6
HOXB3-212ENST00000498678 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP27.24■■□□□ 1.956e-9■■■■□ 25.1
HOXB3-212ENST00000498678 NIPBLQ6KC79 2804 aaeCLIP19.19■□□□□ 0.662e-6■■■■□ 25.1
HOXB3-212ENST00000498678 QKIQ96PU8 341 aaKnown RBP eCLIP26.91■■□□□ 1.95e-6■■■■□ 24.8
HOXB3-212ENST00000498678 HNRNPMP52272 730 aaKnown RBP eCLIP38.24■■■■□ 3.712e-6■■■■□ 24.7
HOXB3-212ENST00000498678 RBM15Q96T37 977 aaKnown RBP eCLIP26.88■■□□□ 1.893e-7■■■■□ 23.5
HOXB3-212ENST00000498678 AQRO60306 1485 aaKnown RBP eCLIP41.01■■■■■ 4.162e-7■■■■□ 21.2
HOXB3-212ENST00000498678 U2AF1Q01081 240 aaKnown RBP eCLIP34.45■■■■□ 3.14e-6■■■■□ 20.8
HOXB3-212ENST00000498678 DDX6P26196 483 aaKnown RBP eCLIP26.4■■□□□ 1.823e-6■■■□□ 19.1
HOXB3-212ENST00000498678 EIF4G2P78344 907 aaKnown RBP eCLIP36.85■■■■□ 3.494e-7■■■□□ 18.3
HOXB3-212ENST00000498678 NONOQ15233 471 aaKnown RBP eCLIP29.69■■■□□ 2.343e-6■■■□□ 18.1
HOXB3-212ENST00000498678 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP23.67■■□□□ 1.384e-6■■■□□ 18.1
HOXB3-212ENST00000498678 UPF1Q92900 1129 aaKnown RBP eCLIP30.44■■■□□ 2.462e-6■■■□□ 17.8
HOXB3-212ENST00000498678 HNRNPKP61978 463 aaKnown RBP eCLIP24.78■■□□□ 1.562e-9■■■□□ 16.8
HOXB3-212ENST00000498678 GTF2F1P35269 517 aaKnown RBP eCLIP28.11■■■□□ 2.094e-7■■■□□ 16.8
HOXB3-212ENST00000498678 DDX51Q8N8A6 666 aaKnown RBP eCLIP26.12■■□□□ 1.773e-6■■■□□ 16.3
HOXB3-212ENST00000498678 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP23.18■■□□□ 1.33e-6■■■□□ 15.8
HOXB3-212ENST00000498678 DDX24Q9GZR7 859 aaKnown RBP eCLIP31.23■■■□□ 2.593e-8■■□□□ 14.5
HOXB3-212ENST00000498678 GPKOWQ92917 476 aaPredicted RBP eCLIP29.96■■■□□ 2.399e-6■■□□□ 14.5
HOXB3-212ENST00000498678 MATR3P43243 847 aaKnown RBP eCLIP28.25■■■□□ 2.112e-7■■□□□ 14.4
HOXB3-212ENST00000498678 SRSF1Q07955 248 aaKnown RBP eCLIP21.31■■□□□ 12e-6■■□□□ 13
HOXB3-212ENST00000498678 WDR43Q15061 677 aaKnown RBP eCLIP34.84■■■■□ 3.174e-9■■□□□ 12.8
HOXB3-212ENST00000498678 XRCC6P12956 609 aaKnown RBP eCLIP29.93■■■□□ 2.388e-6■■□□□ 12.6
HOXB3-212ENST00000498678 PUM2Q8TB72 1066 aaKnown RBP eCLIP24.95■■□□□ 1.589e-7■■□□□ 12.2
HOXB3-212ENST00000498678 EFTUD2Q15029 972 aaKnown RBP eCLIP26.59■■□□□ 1.851e-6■■□□□ 12.1
HOXB3-212ENST00000498678 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.49■■■■□ 3.751e-8■■□□□ 11.7
HOXB3-212ENST00000498678 SLTMQ9NWH9 1034 aaKnown RBP eCLIP27.35■■□□□ 1.974e-9■□□□□ 11.2
HOXB3-212ENST00000498678 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP28.73■■■□□ 2.192e-6■□□□□ 11
HOXB3-212ENST00000498678 TIA1P31483 386 aaKnown RBP eCLIP24.99■■□□□ 1.592e-6■□□□□ 10.8
HOXB3-212ENST00000498678 U2AF2P26368 475 aaKnown RBP eCLIP30.14■■■□□ 2.422e-6■□□□□ 10.7
HOXB3-212ENST00000498678 SDAD1Q9NVU7 687 aaKnown RBP eCLIP25.45■■□□□ 1.672e-6■□□□□ 10.4
HOXB3-212ENST00000498678 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP27.04■■□□□ 1.921e-7■□□□□ 10.1
HOXB3-212ENST00000498678 FMR1Q06787 632 aaKnown RBP eCLIP29.25■■■□□ 2.271e-8■□□□□ 9.5
HOXB3-212ENST00000498678 RPS3P23396 243 aaKnown RBP eCLIP25.83■■□□□ 1.735e-7■□□□□ 8.4
Retrieved 41 of 41 RNA–protein pairs in 610.3 ms