RNA–Protein interactions for RNA: ENST00000498090.1

AFF3-215, Transcript of AF4/FMR2 family member 3, humanhuman

TSL 2

Gene AFF3, Length 1,673 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AFF3-215ENST00000498090 NISCHQ9Y2I1 1504 aa27.86■■■□□ 2.05
AFF3-215ENST00000498090 CCDC180Q9P1Z9 1646 aa24.45■■□□□ 1.5
AFF3-215ENST00000498090 ABCC9O60706 1549 aa23.59■■□□□ 1.37
AFF3-215ENST00000498090 ZCCHC6Q5VYS8 1495 aaKnown RBP23.36■■□□□ 1.33
AFF3-215ENST00000498090 DCAF1Q9Y4B6 1507 aa23.04■■□□□ 1.28
AFF3-215ENST00000498090 DCAF8L2P0C7V8 631 aa22.98■■□□□ 1.27
AFF3-215ENST00000498090 MYO15BQ96JP2 1530 aa22.89■■□□□ 1.26
AFF3-215ENST00000498090 NACADO15069 1562 aa22.84■■□□□ 1.25
AFF3-215ENST00000498090 RB1CC1Q8TDY2 1594 aa22.71■■□□□ 1.23
AFF3-215ENST00000498090 SHROOM4Q9ULL8 1493 aa22.44■■□□□ 1.18
AFF3-215ENST00000498090 SCRIBQ14160 1630 aa22.43■■□□□ 1.18
AFF3-215ENST00000498090 AEBP2Q6ZN18 517 aaPredicted RBP22.36■■□□□ 1.17
AFF3-215ENST00000498090 UNC13AQ9UPW8 1703 aa22.25■■□□□ 1.15
AFF3-215ENST00000498090 BICRAQ9NZM4 1560 aa22.09■■□□□ 1.13
AFF3-215ENST00000498090 PABPN1Q86U42 306 aaKnown RBP eCLIP22.09■■□□□ 1.13
AFF3-215ENST00000498090 CHIC1Q5VXU3 224 aa21.77■■□□□ 1.08
AFF3-215ENST00000498090 DNAJC5BQ9UF47 199 aa21.75■■□□□ 1.07
AFF3-215ENST00000498090 CECR2Q9BXF3 1484 aa21.68■■□□□ 1.06
AFF3-215ENST00000498090 MROH2BQ7Z745 1585 aa21.52■■□□□ 1.04
AFF3-215ENST00000498090 BAZ1AQ9NRL2 1556 aaPredicted RBP21.52■■□□□ 1.04
AFF3-215ENST00000498090 SMARCA4P51532 1647 aa21.48■■□□□ 1.03
AFF3-215ENST00000498090 RSF1Q96T23 1441 aaPredicted RBP21.47■■□□□ 1.03
AFF3-215ENST00000498090 EIF4G1Q04637 1599 aaKnown RBP21.43■■□□□ 1.02
AFF3-215ENST00000498090 SUPT5HO00267 1087 aaKnown RBP21.37■■□□□ 1.01
AFF3-215ENST00000498090 CC2D2AQ9P2K1 1620 aa21.31■■□□□ 1
AFF3-215ENST00000498090 WIZO95785 1651 aa21.31■■□□□ 1
AFF3-215ENST00000498090 PEG3Q9GZU2 1588 aa21.25■□□□□ 0.99
AFF3-215ENST00000498090 ATAD2BQ9ULI0 1458 aa21.22■□□□□ 0.99
AFF3-215ENST00000498090 SMARCA2P51531 1590 aa21.17■□□□□ 0.98
AFF3-215ENST00000498090 TOP2AP11388 1531 aaKnown RBP21.09■□□□□ 0.97
AFF3-215ENST00000498090 NCAPD3P42695 1498 aa21.09■□□□□ 0.97
AFF3-215ENST00000498090 BAZ1BQ9UIG0 1483 aaKnown RBP21.06■□□□□ 0.96
AFF3-215ENST00000498090 HMGXB3Q12766 1538 aa21.05■□□□□ 0.96
AFF3-215ENST00000498090 CCDC88BA6NC98 1476 aa20.85■□□□□ 0.93
AFF3-215ENST00000498090 CFTRP13569 1480 aa20.53■□□□□ 0.88
AFF3-215ENST00000498090 CADPSQ9ULU8 1353 aa20.5■□□□□ 0.87
AFF3-215ENST00000498090 NESP48681 1621 aa20.47■□□□□ 0.87
AFF3-215ENST00000498090 LAMC3Q9Y6N6 1575 aa20.41■□□□□ 0.86
AFF3-215ENST00000498090 PRDM2Q13029 1718 aa20.38■□□□□ 0.85
AFF3-215ENST00000498090 ABCC8Q09428 1581 aa20.31■□□□□ 0.84
AFF3-215ENST00000498090 FANCD2Q9BXW9 1451 aa20.29■□□□□ 0.84
AFF3-215ENST00000498090 ERCC6Q03468 1493 aa20.26■□□□□ 0.83
AFF3-215ENST00000498090 PDS5BQ9NTI5 1447 aa20.24■□□□□ 0.83
AFF3-215ENST00000498090 WRNQ14191 1432 aaPredicted RBP eCLIP20.2■□□□□ 0.82
AFF3-215ENST00000498090 KIF21AQ7Z4S6 1674 aa20.2■□□□□ 0.82
AFF3-215ENST00000498090 CEP164Q9UPV0 1460 aa20.19■□□□□ 0.82
AFF3-215ENST00000498090 SYNJ1O43426 1573 aa20.17■□□□□ 0.82
AFF3-215ENST00000498090 CUX1P39880 1505 aa20.14■□□□□ 0.82
AFF3-215ENST00000498090 TRIM41Q8WV44 630 aa20.1■□□□□ 0.81
AFF3-215ENST00000498090 TOP2BQ02880 1626 aa20.09■□□□□ 0.81
AFF3-215ENST00000498090 BIVM-ERCC5R4GMW8 1640 aa20.09■□□□□ 0.81
AFF3-215ENST00000498090 URB2Q14146 1524 aaKnown RBP20.09■□□□□ 0.81
AFF3-215ENST00000498090 THOC2Q8NI27 1593 aaKnown RBP20.08■□□□□ 0.81
AFF3-215ENST00000498090 HRCP23327 699 aa20.08■□□□□ 0.81
AFF3-215ENST00000498090 CUX2O14529 1486 aa20.06■□□□□ 0.8
AFF3-215ENST00000498090 DNMBPQ6XZF7 1577 aa20.05■□□□□ 0.8
AFF3-215ENST00000498090 TOPBP1Q92547 1522 aa20.05■□□□□ 0.8
AFF3-215ENST00000498090 MRC2Q9UBG0 1479 aa20.04■□□□□ 0.8
AFF3-215ENST00000498090 WDR62O43379 1518 aa19.97■□□□□ 0.79
AFF3-215ENST00000498090 FGD5Q6ZNL6 1462 aa19.96■□□□□ 0.79
AFF3-215ENST00000498090 LOC105371045A0A1W2PR82 267 aa19.95■□□□□ 0.78
AFF3-215ENST00000498090 PCGF6Q9BYE7 350 aa19.94■□□□□ 0.78
AFF3-215ENST00000498090 POLA1P09884 1462 aaPredicted RBP19.92■□□□□ 0.78
AFF3-215ENST00000498090 SOGA1O94964 1423 aa19.85■□□□□ 0.77
AFF3-215ENST00000498090 RAD54L2Q9Y4B4 1467 aa19.85■□□□□ 0.77
AFF3-215ENST00000498090 RUSC2Q8N2Y8 1516 aa19.81■□□□□ 0.76
AFF3-215ENST00000498090 TRIM26Q12899 539 aaPredicted RBP19.81■□□□□ 0.76
AFF3-215ENST00000498090 ABCA10Q8WWZ4 1543 aa19.78■□□□□ 0.76
AFF3-215ENST00000498090 WDR97A6NE52 1622 aa19.77■□□□□ 0.76
AFF3-215ENST00000498090 TARBP1Q13395 1621 aaKnown RBP19.77■□□□□ 0.76
AFF3-215ENST00000498090 FAM9AQ8IZU1 332 aaPredicted RBP19.74■□□□□ 0.75
AFF3-215ENST00000498090 IFT140Q96RY7 1462 aa19.73■□□□□ 0.75
AFF3-215ENST00000498090 EEA1Q15075 1411 aa19.71■□□□□ 0.75
AFF3-215ENST00000498090 KIF27Q86VH2 1401 aa19.7■□□□□ 0.74
AFF3-215ENST00000498090 ABCA5Q8WWZ7 1642 aa19.67■□□□□ 0.74
AFF3-215ENST00000498090 TDRD9Q8NDG6 1382 aaKnown RBP19.66■□□□□ 0.74
AFF3-215ENST00000498090 ZNF608Q9ULD9 1512 aaPredicted RBP19.66■□□□□ 0.74
AFF3-215ENST00000498090 CSRNP3Q8WYN3 585 aa19.61■□□□□ 0.73
AFF3-215ENST00000498090 AQRO60306 1485 aaKnown RBP eCLIP19.6■□□□□ 0.73
AFF3-215ENST00000498090 GAPVD1Q14C86 1478 aa19.6■□□□□ 0.73
AFF3-215ENST00000498090 EIF4G3O43432 1585 aaKnown RBP19.59■□□□□ 0.73
AFF3-215ENST00000498090 IGF1RP08069 1367 aa19.58■□□□□ 0.72
AFF3-215ENST00000498090 ZEB1P37275 1124 aaPredicted RBP19.53■□□□□ 0.72
AFF3-215ENST00000498090 PBRM1Q86U86 1689 aa19.53■□□□□ 0.72
AFF3-215ENST00000498090 ERICH3Q5RHP9 1530 aa19.53■□□□□ 0.72
AFF3-215ENST00000498090 PRXQ9BXM0 1461 aa19.53■□□□□ 0.72
AFF3-215ENST00000498090 GRIN2BQ13224 1484 aa19.51■□□□□ 0.71
AFF3-215ENST00000498090 KIF21BO75037 1637 aa19.51■□□□□ 0.71
AFF3-215ENST00000498090 DNAJC5Q9H3Z4 198 aa19.48■□□□□ 0.71
AFF3-215ENST00000498090 EHMT2Q96KQ7 1210 aa19.46■□□□□ 0.71
AFF3-215ENST00000498090 RAPGEF2Q9Y4G8 1499 aa19.46■□□□□ 0.71
AFF3-215ENST00000498090 CUL7Q14999 1698 aa19.46■□□□□ 0.71
AFF3-215ENST00000498090 CARMIL1Q5VZK9 1371 aa19.46■□□□□ 0.71
AFF3-215ENST00000498090 SNAPC4Q5SXM2 1469 aa19.44■□□□□ 0.7
AFF3-215ENST00000498090 ADAMTS12P58397 1594 aa19.44■□□□□ 0.7
AFF3-215ENST00000498090 GOLGA3Q08378 1498 aa19.44■□□□□ 0.7
AFF3-215ENST00000498090 FHAD1B1AJZ9 1412 aa19.39■□□□□ 0.69
AFF3-215ENST00000498090 MAGI1Q96QZ7 1491 aaPredicted RBP19.38■□□□□ 0.69
AFF3-215ENST00000498090 PPARGC1BQ86YN6 1023 aaKnown RBP19.35■□□□□ 0.69
AFF3-215ENST00000498090 SYNJ2O15056 1496 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 216.8 ms