RNA–Protein interactions for RNA: ENST00000497957.1

PTK7-220, Transcript of protein tyrosine kinase 7 (inactive), humanhuman

TSL 3

Gene PTK7, Length 713 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTK7-220ENST00000497957 NISCHQ9Y2I1 1504 aa37.34■■■■□ 3.57
PTK7-220ENST00000497957 CCDC180Q9P1Z9 1646 aa32.72■■■□□ 2.83
PTK7-220ENST00000497957 ABCC9O60706 1549 aa31.46■■■□□ 2.63
PTK7-220ENST00000497957 ZCCHC6Q5VYS8 1495 aaKnown RBP31.27■■■□□ 2.6
PTK7-220ENST00000497957 DCAF8L2P0C7V8 631 aa30.99■■■□□ 2.55
PTK7-220ENST00000497957 DCAF1Q9Y4B6 1507 aa30.78■■■□□ 2.52
PTK7-220ENST00000497957 NACADO15069 1562 aa30.56■■■□□ 2.48
PTK7-220ENST00000497957 MYO15BQ96JP2 1530 aa30.55■■■□□ 2.48
PTK7-220ENST00000497957 RB1CC1Q8TDY2 1594 aa30.41■■■□□ 2.46
PTK7-220ENST00000497957 SHROOM4Q9ULL8 1493 aa30.26■■■□□ 2.44
PTK7-220ENST00000497957 SCRIBQ14160 1630 aa30.14■■■□□ 2.42
PTK7-220ENST00000497957 UNC13AQ9UPW8 1703 aa29.91■■■□□ 2.38
PTK7-220ENST00000497957 BICRAQ9NZM4 1560 aa29.64■■■□□ 2.33
PTK7-220ENST00000497957 PABPN1Q86U42 306 aaKnown RBP eCLIP29.6■■■□□ 2.33
PTK7-220ENST00000497957 CECR2Q9BXF3 1484 aa29.15■■■□□ 2.26
PTK7-220ENST00000497957 MROH2BQ7Z745 1585 aa28.9■■■□□ 2.22
PTK7-220ENST00000497957 RSF1Q96T23 1441 aaPredicted RBP28.82■■■□□ 2.2
PTK7-220ENST00000497957 SMARCA4P51532 1647 aa28.82■■■□□ 2.2
PTK7-220ENST00000497957 BAZ1AQ9NRL2 1556 aaPredicted RBP28.81■■■□□ 2.2
PTK7-220ENST00000497957 SUPT5HO00267 1087 aaKnown RBP28.81■■■□□ 2.2
PTK7-220ENST00000497957 EIF4G1Q04637 1599 aaKnown RBP28.71■■■□□ 2.19
PTK7-220ENST00000497957 WIZO95785 1651 aa28.64■■■□□ 2.18
PTK7-220ENST00000497957 ATAD2BQ9ULI0 1458 aa28.45■■■□□ 2.14
PTK7-220ENST00000497957 CC2D2AQ9P2K1 1620 aa28.43■■■□□ 2.14
PTK7-220ENST00000497957 PEG3Q9GZU2 1588 aa28.41■■■□□ 2.14
PTK7-220ENST00000497957 SMARCA2P51531 1590 aa28.34■■■□□ 2.13
PTK7-220ENST00000497957 TOP2AP11388 1531 aaKnown RBP28.27■■■□□ 2.12
PTK7-220ENST00000497957 DNAJC5BQ9UF47 199 aa28.24■■■□□ 2.11
PTK7-220ENST00000497957 NCAPD3P42695 1498 aa28.23■■■□□ 2.11
PTK7-220ENST00000497957 BAZ1BQ9UIG0 1483 aaKnown RBP28.23■■■□□ 2.11
PTK7-220ENST00000497957 HMGXB3Q12766 1538 aa28.15■■■□□ 2.1
PTK7-220ENST00000497957 CCDC88BA6NC98 1476 aa28■■■□□ 2.07
PTK7-220ENST00000497957 NESP48681 1621 aa27.52■■■□□ 2
PTK7-220ENST00000497957 CFTRP13569 1480 aa27.49■■□□□ 1.99
PTK7-220ENST00000497957 CADPSQ9ULU8 1353 aa27.48■■□□□ 1.99
PTK7-220ENST00000497957 CHIC1Q5VXU3 224 aa27.35■■□□□ 1.97
PTK7-220ENST00000497957 ABCC8Q09428 1581 aa27.32■■□□□ 1.96
PTK7-220ENST00000497957 LAMC3Q9Y6N6 1575 aa27.32■■□□□ 1.96
PTK7-220ENST00000497957 PRDM2Q13029 1718 aa27.32■■□□□ 1.96
PTK7-220ENST00000497957 FANCD2Q9BXW9 1451 aa27.2■■□□□ 1.95
PTK7-220ENST00000497957 KIF21AQ7Z4S6 1674 aa27.14■■□□□ 1.94
PTK7-220ENST00000497957 SYNJ1O43426 1573 aa27.09■■□□□ 1.93
PTK7-220ENST00000497957 WRNQ14191 1432 aaPredicted RBP eCLIP27.09■■□□□ 1.93
PTK7-220ENST00000497957 PDS5BQ9NTI5 1447 aa27.09■■□□□ 1.93
PTK7-220ENST00000497957 CEP164Q9UPV0 1460 aa27.06■■□□□ 1.92
PTK7-220ENST00000497957 CUX1P39880 1505 aa27.05■■□□□ 1.92
PTK7-220ENST00000497957 TRIM41Q8WV44 630 aa27.03■■□□□ 1.92
PTK7-220ENST00000497957 URB2Q14146 1524 aaKnown RBP26.95■■□□□ 1.91
PTK7-220ENST00000497957 TOP2BQ02880 1626 aa26.94■■□□□ 1.9
PTK7-220ENST00000497957 BIVM-ERCC5R4GMW8 1640 aa26.94■■□□□ 1.9
PTK7-220ENST00000497957 ERCC6Q03468 1493 aa26.93■■□□□ 1.9
PTK7-220ENST00000497957 TOPBP1Q92547 1522 aa26.88■■□□□ 1.89
PTK7-220ENST00000497957 DNMBPQ6XZF7 1577 aa26.88■■□□□ 1.89
PTK7-220ENST00000497957 MRC2Q9UBG0 1479 aa26.86■■□□□ 1.89
PTK7-220ENST00000497957 THOC2Q8NI27 1593 aaKnown RBP26.81■■□□□ 1.88
PTK7-220ENST00000497957 FGD5Q6ZNL6 1462 aa26.79■■□□□ 1.88
PTK7-220ENST00000497957 WDR62O43379 1518 aa26.73■■□□□ 1.87
PTK7-220ENST00000497957 POLA1P09884 1462 aaPredicted RBP26.71■■□□□ 1.87
PTK7-220ENST00000497957 SOGA1O94964 1423 aa26.7■■□□□ 1.86
PTK7-220ENST00000497957 RUSC2Q8N2Y8 1516 aa26.69■■□□□ 1.86
PTK7-220ENST00000497957 RAD54L2Q9Y4B4 1467 aa26.68■■□□□ 1.86
PTK7-220ENST00000497957 FAM9AQ8IZU1 332 aaPredicted RBP26.66■■□□□ 1.86
PTK7-220ENST00000497957 CUX2O14529 1486 aa26.6■■□□□ 1.85
PTK7-220ENST00000497957 TARBP1Q13395 1621 aaKnown RBP26.53■■□□□ 1.84
PTK7-220ENST00000497957 WDR97A6NE52 1622 aa26.51■■□□□ 1.83
PTK7-220ENST00000497957 ABCA10Q8WWZ4 1543 aa26.49■■□□□ 1.83
PTK7-220ENST00000497957 TDRD9Q8NDG6 1382 aaKnown RBP26.43■■□□□ 1.82
PTK7-220ENST00000497957 IFT140Q96RY7 1462 aa26.42■■□□□ 1.82
PTK7-220ENST00000497957 ZNF608Q9ULD9 1512 aaPredicted RBP26.41■■□□□ 1.82
PTK7-220ENST00000497957 KIF27Q86VH2 1401 aa26.4■■□□□ 1.82
PTK7-220ENST00000497957 EHMT2Q96KQ7 1210 aa26.37■■□□□ 1.81
PTK7-220ENST00000497957 EEA1Q15075 1411 aa26.36■■□□□ 1.81
PTK7-220ENST00000497957 ABCA5Q8WWZ7 1642 aa26.36■■□□□ 1.81
PTK7-220ENST00000497957 CSRNP3Q8WYN3 585 aa26.35■■□□□ 1.81
PTK7-220ENST00000497957 AQRO60306 1485 aaKnown RBP eCLIP26.35■■□□□ 1.813e-7■■■■■ 31
PTK7-220ENST00000497957 LOC105371045A0A1W2PR82 267 aa26.34■■□□□ 1.81
PTK7-220ENST00000497957 GAPVD1Q14C86 1478 aa26.29■■□□□ 1.8
PTK7-220ENST00000497957 IGF1RP08069 1367 aa26.28■■□□□ 1.8
PTK7-220ENST00000497957 EIF4G3O43432 1585 aaKnown RBP26.26■■□□□ 1.79
PTK7-220ENST00000497957 PBRM1Q86U86 1689 aa26.22■■□□□ 1.79
PTK7-220ENST00000497957 PRXQ9BXM0 1461 aa26.17■■□□□ 1.78
PTK7-220ENST00000497957 KIF21BO75037 1637 aa26.15■■□□□ 1.78
PTK7-220ENST00000497957 RAPGEF2Q9Y4G8 1499 aa26.15■■□□□ 1.78
PTK7-220ENST00000497957 ERICH3Q5RHP9 1530 aa26.14■■□□□ 1.78
PTK7-220ENST00000497957 GRIN2BQ13224 1484 aa26.14■■□□□ 1.78
PTK7-220ENST00000497957 CARMIL1Q5VZK9 1371 aa26.12■■□□□ 1.77
PTK7-220ENST00000497957 SNAPC4Q5SXM2 1469 aa26.09■■□□□ 1.77
PTK7-220ENST00000497957 CUL7Q14999 1698 aa26.06■■□□□ 1.76
PTK7-220ENST00000497957 GOLGA3Q08378 1498 aa26.06■■□□□ 1.76
PTK7-220ENST00000497957 ADAMTS12P58397 1594 aa26.06■■□□□ 1.76
PTK7-220ENST00000497957 FHAD1B1AJZ9 1412 aa25.97■■□□□ 1.75
PTK7-220ENST00000497957 UBTFP17480 764 aaKnown RBP25.97■■□□□ 1.75
PTK7-220ENST00000497957 MAGI1Q96QZ7 1491 aaPredicted RBP25.94■■□□□ 1.74
PTK7-220ENST00000497957 TNIKQ9UKE5 1360 aa25.89■■□□□ 1.74
PTK7-220ENST00000497957 SYNJ2O15056 1496 aa25.86■■□□□ 1.73
PTK7-220ENST00000497957 FBLN2P98095 1184 aa25.84■■□□□ 1.73
PTK7-220ENST00000497957 GRIN2AQ12879 1464 aa25.84■■□□□ 1.73
PTK7-220ENST00000497957 CHD1O14646 1710 aa25.81■■□□□ 1.72
PTK7-220ENST00000497957 RANGAP1P46060 587 aaPredicted RBP25.81■■□□□ 1.72
PTK7-220ENST00000497957 CHMP7Q8WUX9 453 aaPredicted RBP25.81■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms