RNA–Protein interactions for RNA: ENST00000496840.1

TARDBP-210, Transcript of TAR DNA binding protein, humanhuman

TSL 3

Gene TARDBP, Length 692 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-210ENST00000496840 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.04□□□□□ -2.421e-41■■■■■ 46.1
TARDBP-210ENST00000496840 U2AF2P26368 475 aaKnown RBP eCLIP2.71□□□□□ -1.988e-15■□□□□ 10.4
TARDBP-210ENST00000496840 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.19□□□□□ -1.421e-13■■■■■ 35.6
TARDBP-210ENST00000496840 TARDBPQ13148 414 aaKnown RBP eCLIP7.96□□□□□ -1.141e-13■■■■■ 26.9
TARDBP-210ENST00000496840 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.11□□□□□ -1.113e-13■□□□□ 8.3
TARDBP-210ENST00000496840 GRSF1Q12849 480 aaKnown RBP eCLIP6.15□□□□□ -1.421e-11■■□□□ 12.1
TARDBP-210ENST00000496840 EIF4G2P78344 907 aaKnown RBP eCLIP13.15□□□□□ -0.38e-11■■□□□ 12.1
TARDBP-210ENST00000496840 KHSRPQ92945 711 aaKnown RBP eCLIP16.24■□□□□ 0.191e-10■■■■□ 25
TARDBP-210ENST00000496840 SRSF7Q16629 238 aaKnown RBP eCLIP7.27□□□□□ -1.252e-10■■■□□ 18.4
TARDBP-210ENST00000496840 FUSP35637 526 aaKnown RBP eCLIP2.02□□□□□ -2.093e-10■■□□□ 12.1
TARDBP-210ENST00000496840 ZRANB2O95218 330 aaKnown RBP eCLIP7.86□□□□□ -1.158e-10■□□□□ 10
TARDBP-210ENST00000496840 LSM11P83369 360 aaKnown RBP eCLIP15.77■□□□□ 0.123e-9■■□□□ 11.9
TARDBP-210ENST00000496840 TIA1P31483 386 aaKnown RBP eCLIP4.35□□□□□ -1.717e-9■■■■□ 22.9
TARDBP-210ENST00000496840 RBM22Q9NW64 420 aaKnown RBP eCLIP2.24□□□□□ -2.055e-8■□□□□ 9.1
TARDBP-210ENST00000496840 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.33□□□□□ -1.087e-8■□□□□ 8.3
TARDBP-210ENST00000496840 CPSF6Q16630 551 aaKnown RBP eCLIP10.87□□□□□ -0.678e-8■■■□□ 17.3
TARDBP-210ENST00000496840 ZC3H11AO75152 810 aaKnown RBP eCLIP6.7□□□□□ -1.341e-7■■□□□ 12
TARDBP-210ENST00000496840 SRSF1Q07955 248 aaKnown RBP eCLIP6.98□□□□□ -1.298e-7■□□□□ 10.8
TARDBP-210ENST00000496840 SF3B4Q15427 424 aaKnown RBP eCLIP6.09□□□□□ -1.438e-7■■□□□ 12.3
TARDBP-210ENST00000496840 TIAL1Q01085 375 aaKnown RBP eCLIP7.25□□□□□ -1.252e-6■■□□□ 13.8
TARDBP-210ENST00000496840 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.73□□□□□ -0.853e-6■□□□□ 10.1
TARDBP-210ENST00000496840 QKIQ96PU8 341 aaKnown RBP eCLIP2.26□□□□□ -2.053e-6■□□□□ 9.1
TARDBP-210ENST00000496840 RBFOX2O43251 390 aaKnown RBP eCLIP2.71□□□□□ -1.989e-6■□□□□ 10.7
Retrieved 23 of 23 RNA–protein pairs in 52.2 ms