RNA–Protein interactions for RNA: ENST00000493199.1

NEK4-205, Transcript of NIMA related kinase 4, humanhuman

TSL 3

Gene NEK4, Length 355 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-205ENST00000493199 NISCHQ9Y2I1 1504 aa12.1□□□□□ -0.47
NEK4-205ENST00000493199 CCDC180Q9P1Z9 1646 aa10.69□□□□□ -0.7
NEK4-205ENST00000493199 AEBP2Q6ZN18 517 aaPredicted RBP10.61□□□□□ -0.71
NEK4-205ENST00000493199 ABCC9O60706 1549 aa10.55□□□□□ -0.72
NEK4-205ENST00000493199 DCAF8L2P0C7V8 631 aa10.2□□□□□ -0.78
NEK4-205ENST00000493199 ZCCHC6Q5VYS8 1495 aaKnown RBP10.09□□□□□ -0.79
NEK4-205ENST00000493199 DCAF1Q9Y4B6 1507 aa10.07□□□□□ -0.8
NEK4-205ENST00000493199 MYO15BQ96JP2 1530 aa10.06□□□□□ -0.8
NEK4-205ENST00000493199 NACADO15069 1562 aa10.05□□□□□ -0.8
NEK4-205ENST00000493199 DNAJC5BQ9UF47 199 aa10.04□□□□□ -0.8
NEK4-205ENST00000493199 RB1CC1Q8TDY2 1594 aa10.02□□□□□ -0.81
NEK4-205ENST00000493199 CHIC1Q5VXU3 224 aa10.01□□□□□ -0.81
NEK4-205ENST00000493199 PABPN1Q86U42 306 aaKnown RBP eCLIP9.79□□□□□ -0.84
NEK4-205ENST00000493199 UNC13AQ9UPW8 1703 aa9.79□□□□□ -0.84
NEK4-205ENST00000493199 BICRAQ9NZM4 1560 aa9.73□□□□□ -0.85
NEK4-205ENST00000493199 SCRIBQ14160 1630 aa9.71□□□□□ -0.86
NEK4-205ENST00000493199 SHROOM4Q9ULL8 1493 aa9.67□□□□□ -0.86
NEK4-205ENST00000493199 CC2D2AQ9P2K1 1620 aa9.55□□□□□ -0.88
NEK4-205ENST00000493199 CECR2Q9BXF3 1484 aa9.54□□□□□ -0.88
NEK4-205ENST00000493199 EIF4G1Q04637 1599 aaKnown RBP9.5□□□□□ -0.89
NEK4-205ENST00000493199 BAZ1AQ9NRL2 1556 aaPredicted RBP9.43□□□□□ -0.9
NEK4-205ENST00000493199 DNAJC5Q9H3Z4 198 aa9.36□□□□□ -0.91
NEK4-205ENST00000493199 SUPT5HO00267 1087 aaKnown RBP9.33□□□□□ -0.92
NEK4-205ENST00000493199 SMARCA2P51531 1590 aa9.33□□□□□ -0.92
NEK4-205ENST00000493199 SMARCA4P51532 1647 aa9.32□□□□□ -0.92
NEK4-205ENST00000493199 RSF1Q96T23 1441 aaPredicted RBP9.28□□□□□ -0.92
NEK4-205ENST00000493199 MROH2BQ7Z745 1585 aa9.26□□□□□ -0.93
NEK4-205ENST00000493199 NCAPD3P42695 1498 aa9.24□□□□□ -0.93
NEK4-205ENST00000493199 PEG3Q9GZU2 1588 aa9.24□□□□□ -0.93
NEK4-205ENST00000493199 BAZ1BQ9UIG0 1483 aaKnown RBP9.23□□□□□ -0.93
NEK4-205ENST00000493199 ATAD2BQ9ULI0 1458 aa9.23□□□□□ -0.93
NEK4-205ENST00000493199 CUX2O14529 1486 aa9.2□□□□□ -0.94
NEK4-205ENST00000493199 HMGXB3Q12766 1538 aa9.2□□□□□ -0.94
NEK4-205ENST00000493199 SENP3Q9H4L4 574 aaPredicted RBP9.18□□□□□ -0.94
NEK4-205ENST00000493199 WIZO95785 1651 aa9.17□□□□□ -0.94
NEK4-205ENST00000493199 TOP2AP11388 1531 aaKnown RBP9.15□□□□□ -0.94
NEK4-205ENST00000493199 ERCC6Q03468 1493 aa9.12□□□□□ -0.95
NEK4-205ENST00000493199 CCDC88BA6NC98 1476 aa9.03□□□□□ -0.96
NEK4-205ENST00000493199 NESP48681 1621 aa9.02□□□□□ -0.96
NEK4-205ENST00000493199 CADPSQ9ULU8 1353 aa9.01□□□□□ -0.97
NEK4-205ENST00000493199 PDS5BQ9NTI5 1447 aa8.99□□□□□ -0.97
NEK4-205ENST00000493199 THOC2Q8NI27 1593 aaKnown RBP8.99□□□□□ -0.97
NEK4-205ENST00000493199 LAMC3Q9Y6N6 1575 aa8.99□□□□□ -0.97
NEK4-205ENST00000493199 PHF23Q9BUL5 403 aaPredicted RBP8.98□□□□□ -0.97
NEK4-205ENST00000493199 CFTRP13569 1480 aa8.96□□□□□ -0.98
NEK4-205ENST00000493199 KIF21AQ7Z4S6 1674 aa8.91□□□□□ -0.98
NEK4-205ENST00000493199 ABCC8Q09428 1581 aa8.9□□□□□ -0.98
NEK4-205ENST00000493199 TRIM41Q8WV44 630 aa8.88□□□□□ -0.99
NEK4-205ENST00000493199 CEP164Q9UPV0 1460 aa8.88□□□□□ -0.99
NEK4-205ENST00000493199 PRDM2Q13029 1718 aa8.88□□□□□ -0.99
NEK4-205ENST00000493199 FANCD2Q9BXW9 1451 aa8.87□□□□□ -0.99
NEK4-205ENST00000493199 MRC2Q9UBG0 1479 aa8.84□□□□□ -0.99
NEK4-205ENST00000493199 WDR62O43379 1518 aa8.84□□□□□ -0.99
NEK4-205ENST00000493199 WRNQ14191 1432 aaPredicted RBP eCLIP8.83□□□□□ -1
NEK4-205ENST00000493199 DNMBPQ6XZF7 1577 aa8.76□□□□□ -1.01
NEK4-205ENST00000493199 OSCARQ8IYS5 282 aa8.75□□□□□ -1.01
NEK4-205ENST00000493199 TOP2BQ02880 1626 aa8.73□□□□□ -1.01
NEK4-205ENST00000493199 TOPBP1Q92547 1522 aa8.72□□□□□ -1.01
NEK4-205ENST00000493199 SOGA1O94964 1423 aa8.71□□□□□ -1.01
NEK4-205ENST00000493199 EEA1Q15075 1411 aa8.71□□□□□ -1.01
NEK4-205ENST00000493199 BIVM-ERCC5R4GMW8 1640 aa8.7□□□□□ -1.02
NEK4-205ENST00000493199 IFT140Q96RY7 1462 aa8.7□□□□□ -1.02
NEK4-205ENST00000493199 URB2Q14146 1524 aaKnown RBP8.7□□□□□ -1.02
NEK4-205ENST00000493199 KIF27Q86VH2 1401 aa8.68□□□□□ -1.02
NEK4-205ENST00000493199 FGD5Q6ZNL6 1462 aa8.68□□□□□ -1.02
NEK4-205ENST00000493199 CUX1P39880 1505 aa8.68□□□□□ -1.02
NEK4-205ENST00000493199 POLA1P09884 1462 aaPredicted RBP8.66□□□□□ -1.02
NEK4-205ENST00000493199 WDR97A6NE52 1622 aa8.65□□□□□ -1.02
NEK4-205ENST00000493199 SYNJ1O43426 1573 aa8.65□□□□□ -1.02
NEK4-205ENST00000493199 FAM9AQ8IZU1 332 aaPredicted RBP8.64□□□□□ -1.03
NEK4-205ENST00000493199 RIMBP3CA6NJZ7 1639 aa8.63□□□□□ -1.03
NEK4-205ENST00000493199 RIMBP3BA6NNM3 1639 aa8.63□□□□□ -1.03
NEK4-205ENST00000493199 RIMBP3Q9UFD9 1639 aa8.63□□□□□ -1.03
NEK4-205ENST00000493199 CSRNP3Q8WYN3 585 aa8.63□□□□□ -1.03
NEK4-205ENST00000493199 ABCA10Q8WWZ4 1543 aa8.63□□□□□ -1.03
NEK4-205ENST00000493199 ZNF608Q9ULD9 1512 aaPredicted RBP8.6□□□□□ -1.03
NEK4-205ENST00000493199 ARHGEF11O15085 1522 aa8.59□□□□□ -1.03
NEK4-205ENST00000493199 GAPVD1Q14C86 1478 aa8.59□□□□□ -1.03
NEK4-205ENST00000493199 GRIN2BQ13224 1484 aa8.58□□□□□ -1.04
NEK4-205ENST00000493199 RAD54L2Q9Y4B4 1467 aa8.58□□□□□ -1.04
NEK4-205ENST00000493199 CHMP7Q8WUX9 453 aaPredicted RBP8.58□□□□□ -1.04
NEK4-205ENST00000493199 TDRD9Q8NDG6 1382 aaKnown RBP8.58□□□□□ -1.04
NEK4-205ENST00000493199 ERICH3Q5RHP9 1530 aa8.56□□□□□ -1.04
NEK4-205ENST00000493199 TARBP1Q13395 1621 aaKnown RBP8.56□□□□□ -1.04
NEK4-205ENST00000493199 UBTFP17480 764 aaKnown RBP8.56□□□□□ -1.04
NEK4-205ENST00000493199 FBLN2P98095 1184 aa8.55□□□□□ -1.04
NEK4-205ENST00000493199 EIF4G3O43432 1585 aaKnown RBP8.55□□□□□ -1.04
NEK4-205ENST00000493199 MAGI1Q96QZ7 1491 aaPredicted RBP8.54□□□□□ -1.04
NEK4-205ENST00000493199 CARMIL1Q5VZK9 1371 aa8.54□□□□□ -1.04
NEK4-205ENST00000493199 CUL7Q14999 1698 aa8.53□□□□□ -1.04
NEK4-205ENST00000493199 AQRO60306 1485 aaKnown RBP eCLIP8.53□□□□□ -1.043e-7■■■□□ 17
NEK4-205ENST00000493199 IGF1RP08069 1367 aa8.53□□□□□ -1.04
NEK4-205ENST00000493199 CYB5RLQ6IPT4 315 aa8.53□□□□□ -1.04
NEK4-205ENST00000493199 FHAD1B1AJZ9 1412 aa8.53□□□□□ -1.04
NEK4-205ENST00000493199 CHD1O14646 1710 aa8.51□□□□□ -1.05
NEK4-205ENST00000493199 RAPGEF2Q9Y4G8 1499 aa8.51□□□□□ -1.05
NEK4-205ENST00000493199 FOXD1Q16676 465 aa8.51□□□□□ -1.05
NEK4-205ENST00000493199 ABCA5Q8WWZ7 1642 aa8.51□□□□□ -1.05
NEK4-205ENST00000493199 GOLGA3Q08378 1498 aa8.5□□□□□ -1.05
NEK4-205ENST00000493199 SYNJ2O15056 1496 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms