RNA–Protein interactions for RNA: ENST00000488966.1

YIPF3-207, Transcript of Yip1 domain family member 3, humanhuman

TSL 2

Gene YIPF3, Length 337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF3-207ENST00000488966 NISCHQ9Y2I1 1504 aa27.3■■□□□ 1.96
YIPF3-207ENST00000488966 ABCC9O60706 1549 aa24.79■■□□□ 1.56
YIPF3-207ENST00000488966 CCDC180Q9P1Z9 1646 aa24.48■■□□□ 1.51
YIPF3-207ENST00000488966 DNAJC5BQ9UF47 199 aa23.49■■□□□ 1.35
YIPF3-207ENST00000488966 RB1CC1Q8TDY2 1594 aa23.44■■□□□ 1.34
YIPF3-207ENST00000488966 NACADO15069 1562 aa23.25■■□□□ 1.31
YIPF3-207ENST00000488966 DCAF8L2P0C7V8 631 aa23.19■■□□□ 1.3
YIPF3-207ENST00000488966 PABPN1Q86U42 306 aaKnown RBP eCLIP23.1■■□□□ 1.29
YIPF3-207ENST00000488966 MYO15BQ96JP2 1530 aa22.87■■□□□ 1.25
YIPF3-207ENST00000488966 UNC13AQ9UPW8 1703 aa22.83■■□□□ 1.25
YIPF3-207ENST00000488966 BICRAQ9NZM4 1560 aa22.8■■□□□ 1.24
YIPF3-207ENST00000488966 ZCCHC6Q5VYS8 1495 aaKnown RBP22.58■■□□□ 1.2
YIPF3-207ENST00000488966 DCAF1Q9Y4B6 1507 aa22.51■■□□□ 1.19
YIPF3-207ENST00000488966 SHROOM4Q9ULL8 1493 aa22.43■■□□□ 1.18
YIPF3-207ENST00000488966 SCRIBQ14160 1630 aa22.36■■□□□ 1.17
YIPF3-207ENST00000488966 CECR2Q9BXF3 1484 aa22.34■■□□□ 1.17
YIPF3-207ENST00000488966 CC2D2AQ9P2K1 1620 aa22.34■■□□□ 1.17
YIPF3-207ENST00000488966 EIF4G1Q04637 1599 aaKnown RBP22.25■■□□□ 1.15
YIPF3-207ENST00000488966 DNAJC5Q9H3Z4 198 aa21.67■■□□□ 1.06
YIPF3-207ENST00000488966 NCAPD3P42695 1498 aa21.52■■□□□ 1.03
YIPF3-207ENST00000488966 ATAD2BQ9ULI0 1458 aa21.42■■□□□ 1.02
YIPF3-207ENST00000488966 CUX2O14529 1486 aa21.4■■□□□ 1.02
YIPF3-207ENST00000488966 ERCC6Q03468 1493 aa21.39■■□□□ 1.02
YIPF3-207ENST00000488966 SMARCA2P51531 1590 aa21.31■■□□□ 1
YIPF3-207ENST00000488966 SMARCA4P51532 1647 aa21.29■■□□□ 1
YIPF3-207ENST00000488966 HMGXB3Q12766 1538 aa21.29■■□□□ 1
YIPF3-207ENST00000488966 NESP48681 1621 aa21.24■□□□□ 0.99
YIPF3-207ENST00000488966 BAZ1BQ9UIG0 1483 aaKnown RBP21.18■□□□□ 0.98
YIPF3-207ENST00000488966 BAZ1AQ9NRL2 1556 aaPredicted RBP21.17■□□□□ 0.98
YIPF3-207ENST00000488966 PEG3Q9GZU2 1588 aa21.1■□□□□ 0.97
YIPF3-207ENST00000488966 MROH2BQ7Z745 1585 aa21.05■□□□□ 0.96
YIPF3-207ENST00000488966 THOC2Q8NI27 1593 aaKnown RBP21.01■□□□□ 0.95
YIPF3-207ENST00000488966 LAMC3Q9Y6N6 1575 aa21■□□□□ 0.95
YIPF3-207ENST00000488966 PDS5BQ9NTI5 1447 aa20.93■□□□□ 0.94
YIPF3-207ENST00000488966 KIF21AQ7Z4S6 1674 aa20.86■□□□□ 0.93
YIPF3-207ENST00000488966 CADPSQ9ULU8 1353 aa20.86■□□□□ 0.93
YIPF3-207ENST00000488966 MRC2Q9UBG0 1479 aa20.75■□□□□ 0.91
YIPF3-207ENST00000488966 WIZO95785 1651 aa20.74■□□□□ 0.91
YIPF3-207ENST00000488966 WDR62O43379 1518 aa20.7■□□□□ 0.9
YIPF3-207ENST00000488966 TRIM41Q8WV44 630 aa20.65■□□□□ 0.9
YIPF3-207ENST00000488966 CEP164Q9UPV0 1460 aa20.63■□□□□ 0.89
YIPF3-207ENST00000488966 FANCD2Q9BXW9 1451 aa20.61■□□□□ 0.89
YIPF3-207ENST00000488966 CFTRP13569 1480 aa20.57■□□□□ 0.88
YIPF3-207ENST00000488966 RSF1Q96T23 1441 aaPredicted RBP20.56■□□□□ 0.88
YIPF3-207ENST00000488966 TOP2AP11388 1531 aaKnown RBP20.48■□□□□ 0.87
YIPF3-207ENST00000488966 URB2Q14146 1524 aaKnown RBP20.45■□□□□ 0.86
YIPF3-207ENST00000488966 OSCARQ8IYS5 282 aa20.44■□□□□ 0.86
YIPF3-207ENST00000488966 CCDC88BA6NC98 1476 aa20.29■□□□□ 0.84
YIPF3-207ENST00000488966 ZNF608Q9ULD9 1512 aaPredicted RBP20.25■□□□□ 0.83
YIPF3-207ENST00000488966 IFT140Q96RY7 1462 aa20.23■□□□□ 0.83
YIPF3-207ENST00000488966 TOPBP1Q92547 1522 aa20.19■□□□□ 0.82
YIPF3-207ENST00000488966 PRDM2Q13029 1718 aa20.19■□□□□ 0.82
YIPF3-207ENST00000488966 RIMBP3CA6NJZ7 1639 aa20.13■□□□□ 0.81
YIPF3-207ENST00000488966 RIMBP3BA6NNM3 1639 aa20.13■□□□□ 0.81
YIPF3-207ENST00000488966 RIMBP3Q9UFD9 1639 aa20.13■□□□□ 0.81
YIPF3-207ENST00000488966 ABCC8Q09428 1581 aa20.11■□□□□ 0.81
YIPF3-207ENST00000488966 ARHGEF11O15085 1522 aa20.08■□□□□ 0.81
YIPF3-207ENST00000488966 DNMBPQ6XZF7 1577 aa20.07■□□□□ 0.8
YIPF3-207ENST00000488966 EIF4G3O43432 1585 aaKnown RBP20.06■□□□□ 0.8
YIPF3-207ENST00000488966 AQRO60306 1485 aaKnown RBP eCLIP20.05■□□□□ 0.82e-8■■■□□ 18.7
YIPF3-207ENST00000488966 CYB5RLQ6IPT4 315 aa20.01■□□□□ 0.79
YIPF3-207ENST00000488966 TARBP1Q13395 1621 aaKnown RBP19.99■□□□□ 0.79
YIPF3-207ENST00000488966 POLA1P09884 1462 aaPredicted RBP19.98■□□□□ 0.79
YIPF3-207ENST00000488966 FBLN2P98095 1184 aa19.96■□□□□ 0.79
YIPF3-207ENST00000488966 RAD54L2Q9Y4B4 1467 aa19.93■□□□□ 0.78
YIPF3-207ENST00000488966 TDRD9Q8NDG6 1382 aaKnown RBP19.91■□□□□ 0.78
YIPF3-207ENST00000488966 CHD1O14646 1710 aa19.9■□□□□ 0.78
YIPF3-207ENST00000488966 SOGA1O94964 1423 aa19.9■□□□□ 0.78
YIPF3-207ENST00000488966 ARAP1Q96P48 1450 aa19.89■□□□□ 0.77
YIPF3-207ENST00000488966 FGD5Q6ZNL6 1462 aa19.82■□□□□ 0.76
YIPF3-207ENST00000488966 TRHP20396 242 aaPredicted RBP19.82■□□□□ 0.76
YIPF3-207ENST00000488966 SNAPC4Q5SXM2 1469 aa19.81■□□□□ 0.76
YIPF3-207ENST00000488966 CUX1P39880 1505 aa19.78■□□□□ 0.76
YIPF3-207ENST00000488966 CHMP7Q8WUX9 453 aaPredicted RBP19.77■□□□□ 0.76
YIPF3-207ENST00000488966 CLASP1Q7Z460 1538 aa19.74■□□□□ 0.75
YIPF3-207ENST00000488966 MAGI1Q96QZ7 1491 aaPredicted RBP19.73■□□□□ 0.75
YIPF3-207ENST00000488966 WDR97A6NE52 1622 aa19.73■□□□□ 0.75
YIPF3-207ENST00000488966 GRIN2BQ13224 1484 aa19.73■□□□□ 0.75
YIPF3-207ENST00000488966 SYNJ2O15056 1496 aa19.68■□□□□ 0.74
YIPF3-207ENST00000488966 SYNJ1O43426 1573 aa19.68■□□□□ 0.74
YIPF3-207ENST00000488966 GAPVD1Q14C86 1478 aa19.63■□□□□ 0.73
YIPF3-207ENST00000488966 ABCA10Q8WWZ4 1543 aa19.58■□□□□ 0.73
YIPF3-207ENST00000488966 SUPT5HO00267 1087 aaKnown RBP19.54■□□□□ 0.72
YIPF3-207ENST00000488966 PBRM1Q86U86 1689 aa19.54■□□□□ 0.72
YIPF3-207ENST00000488966 ABCA5Q8WWZ7 1642 aa19.54■□□□□ 0.72
YIPF3-207ENST00000488966 WRNQ14191 1432 aaPredicted RBP eCLIP19.48■□□□□ 0.71
YIPF3-207ENST00000488966 GRIN2AQ12879 1464 aa19.48■□□□□ 0.71
YIPF3-207ENST00000488966 ERCC6L2Q5T890 1561 aa19.44■□□□□ 0.7
YIPF3-207ENST00000488966 NUP160Q12769 1436 aa19.43■□□□□ 0.7
YIPF3-207ENST00000488966 ADAMTS12P58397 1594 aa19.41■□□□□ 0.7
YIPF3-207ENST00000488966 CEP170Q5SW79 1584 aa19.4■□□□□ 0.7
YIPF3-207ENST00000488966 FHAD1B1AJZ9 1412 aa19.38■□□□□ 0.69
YIPF3-207ENST00000488966 TOP2BQ02880 1626 aa19.36■□□□□ 0.69
YIPF3-207ENST00000488966 AEBP2Q6ZN18 517 aaPredicted RBP19.36■□□□□ 0.69
YIPF3-207ENST00000488966 BIVM-ERCC5R4GMW8 1640 aa19.34■□□□□ 0.69
YIPF3-207ENST00000488966 SHROOM2Q13796 1616 aa19.31■□□□□ 0.68
YIPF3-207ENST00000488966 ERICH3Q5RHP9 1530 aa19.3■□□□□ 0.68
YIPF3-207ENST00000488966 PRG4Q92954 1404 aaPredicted RBP19.26■□□□□ 0.67
YIPF3-207ENST00000488966 JPH4Q96JJ6 628 aa19.26■□□□□ 0.67
YIPF3-207ENST00000488966 RUSC2Q8N2Y8 1516 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms