RNA–Protein interactions for RNA: ENST00000488864.5

CHD1L-208, Transcript of chromodomain helicase DNA binding protein 1 like, humanhuman

TSL 2

Gene CHD1L, Length 2,415 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1L-208ENST00000488864 NISCHQ9Y2I1 1504 aa30.12■■■□□ 2.41
CHD1L-208ENST00000488864 CCDC180Q9P1Z9 1646 aa26.32■■□□□ 1.8
CHD1L-208ENST00000488864 ABCC9O60706 1549 aa25.4■■□□□ 1.66
CHD1L-208ENST00000488864 ZCCHC6Q5VYS8 1495 aaKnown RBP25.22■■□□□ 1.63
CHD1L-208ENST00000488864 DCAF8L2P0C7V8 631 aa25.22■■□□□ 1.63
CHD1L-208ENST00000488864 DCAF1Q9Y4B6 1507 aa24.81■■□□□ 1.56
CHD1L-208ENST00000488864 NACADO15069 1562 aa24.64■■□□□ 1.53
CHD1L-208ENST00000488864 MYO15BQ96JP2 1530 aa24.63■■□□□ 1.53
CHD1L-208ENST00000488864 SHROOM4Q9ULL8 1493 aa24.54■■□□□ 1.52
CHD1L-208ENST00000488864 RB1CC1Q8TDY2 1594 aa24.53■■□□□ 1.52
CHD1L-208ENST00000488864 SCRIBQ14160 1630 aa24.31■■□□□ 1.48
CHD1L-208ENST00000488864 UNC13AQ9UPW8 1703 aa24.03■■□□□ 1.44
CHD1L-208ENST00000488864 PABPN1Q86U42 306 aaKnown RBP eCLIP23.95■■□□□ 1.422e-6■■□□□ 13.5
CHD1L-208ENST00000488864 BICRAQ9NZM4 1560 aa23.82■■□□□ 1.4
CHD1L-208ENST00000488864 CECR2Q9BXF3 1484 aa23.51■■□□□ 1.35
CHD1L-208ENST00000488864 SUPT5HO00267 1087 aaKnown RBP23.44■■□□□ 1.34
CHD1L-208ENST00000488864 MROH2BQ7Z745 1585 aa23.31■■□□□ 1.32
CHD1L-208ENST00000488864 RSF1Q96T23 1441 aaPredicted RBP23.28■■□□□ 1.32
CHD1L-208ENST00000488864 BAZ1AQ9NRL2 1556 aaPredicted RBP23.27■■□□□ 1.32
CHD1L-208ENST00000488864 SMARCA4P51532 1647 aa23.22■■□□□ 1.31
CHD1L-208ENST00000488864 EIF4G1Q04637 1599 aaKnown RBP23.15■■□□□ 1.3
CHD1L-208ENST00000488864 WIZO95785 1651 aa23.1■■□□□ 1.29
CHD1L-208ENST00000488864 ATAD2BQ9ULI0 1458 aa22.95■■□□□ 1.26
CHD1L-208ENST00000488864 CC2D2AQ9P2K1 1620 aa22.9■■□□□ 1.26
CHD1L-208ENST00000488864 PEG3Q9GZU2 1588 aa22.89■■□□□ 1.25
CHD1L-208ENST00000488864 SMARCA2P51531 1590 aa22.88■■□□□ 1.25
CHD1L-208ENST00000488864 BAZ1BQ9UIG0 1483 aaKnown RBP22.82■■□□□ 1.24
CHD1L-208ENST00000488864 TOP2AP11388 1531 aaKnown RBP22.79■■□□□ 1.24
CHD1L-208ENST00000488864 NCAPD3P42695 1498 aa22.77■■□□□ 1.24
CHD1L-208ENST00000488864 DNAJC5BQ9UF47 199 aa22.76■■□□□ 1.23
CHD1L-208ENST00000488864 HMGXB3Q12766 1538 aa22.68■■□□□ 1.22
CHD1L-208ENST00000488864 CCDC88BA6NC98 1476 aa22.61■■□□□ 1.21
CHD1L-208ENST00000488864 CADPSQ9ULU8 1353 aa22.21■■□□□ 1.15
CHD1L-208ENST00000488864 CFTRP13569 1480 aa22.2■■□□□ 1.14
CHD1L-208ENST00000488864 NESP48681 1621 aa22.19■■□□□ 1.14
CHD1L-208ENST00000488864 CHIC1Q5VXU3 224 aa22.18■■□□□ 1.14
CHD1L-208ENST00000488864 ABCC8Q09428 1581 aa22.07■■□□□ 1.12
CHD1L-208ENST00000488864 LAMC3Q9Y6N6 1575 aa22.03■■□□□ 1.12
CHD1L-208ENST00000488864 TRIM41Q8WV44 630 aa22■■□□□ 1.11
CHD1L-208ENST00000488864 FANCD2Q9BXW9 1451 aa21.97■■□□□ 1.11
CHD1L-208ENST00000488864 PRDM2Q13029 1718 aa21.96■■□□□ 1.11
CHD1L-208ENST00000488864 WRNQ14191 1432 aaPredicted RBP eCLIP21.93■■□□□ 1.1
CHD1L-208ENST00000488864 PDS5BQ9NTI5 1447 aa21.92■■□□□ 1.1
CHD1L-208ENST00000488864 CEP164Q9UPV0 1460 aa21.86■■□□□ 1.09
CHD1L-208ENST00000488864 SYNJ1O43426 1573 aa21.84■■□□□ 1.09
CHD1L-208ENST00000488864 KIF21AQ7Z4S6 1674 aa21.84■■□□□ 1.09
CHD1L-208ENST00000488864 CUX1P39880 1505 aa21.8■■□□□ 1.08
CHD1L-208ENST00000488864 ERCC6Q03468 1493 aa21.79■■□□□ 1.08
CHD1L-208ENST00000488864 HRCP23327 699 aa21.75■■□□□ 1.07
CHD1L-208ENST00000488864 TOP2BQ02880 1626 aa21.73■■□□□ 1.07
CHD1L-208ENST00000488864 URB2Q14146 1524 aaKnown RBP21.72■■□□□ 1.07
CHD1L-208ENST00000488864 FAM9AQ8IZU1 332 aaPredicted RBP21.69■■□□□ 1.06
CHD1L-208ENST00000488864 TOPBP1Q92547 1522 aa21.68■■□□□ 1.06
CHD1L-208ENST00000488864 BIVM-ERCC5R4GMW8 1640 aa21.68■■□□□ 1.06
CHD1L-208ENST00000488864 DNMBPQ6XZF7 1577 aa21.66■■□□□ 1.06
CHD1L-208ENST00000488864 MRC2Q9UBG0 1479 aa21.65■■□□□ 1.06
CHD1L-208ENST00000488864 FGD5Q6ZNL6 1462 aa21.63■■□□□ 1.05
CHD1L-208ENST00000488864 SOGA1O94964 1423 aa21.6■■□□□ 1.05
CHD1L-208ENST00000488864 POLA1P09884 1462 aaPredicted RBP21.57■■□□□ 1.04
CHD1L-208ENST00000488864 RUSC2Q8N2Y8 1516 aa21.55■■□□□ 1.04
CHD1L-208ENST00000488864 RAD54L2Q9Y4B4 1467 aa21.55■■□□□ 1.04
CHD1L-208ENST00000488864 THOC2Q8NI27 1593 aaKnown RBP21.55■■□□□ 1.04
CHD1L-208ENST00000488864 WDR62O43379 1518 aa21.53■■□□□ 1.04
CHD1L-208ENST00000488864 EHMT2Q96KQ7 1210 aa21.48■■□□□ 1.03
CHD1L-208ENST00000488864 PCGF6Q9BYE7 350 aa21.47■■□□□ 1.03
CHD1L-208ENST00000488864 CUX2O14529 1486 aa21.45■■□□□ 1.02
CHD1L-208ENST00000488864 LOC105371045A0A1W2PR82 267 aa21.41■■□□□ 1.02
CHD1L-208ENST00000488864 TDRD9Q8NDG6 1382 aaKnown RBP21.39■■□□□ 1.02
CHD1L-208ENST00000488864 KIF27Q86VH2 1401 aa21.39■■□□□ 1.01
CHD1L-208ENST00000488864 CSRNP3Q8WYN3 585 aa21.38■■□□□ 1.01
CHD1L-208ENST00000488864 ABCA10Q8WWZ4 1543 aa21.38■■□□□ 1.01
CHD1L-208ENST00000488864 TARBP1Q13395 1621 aaKnown RBP21.36■■□□□ 1.01
CHD1L-208ENST00000488864 PPARGC1BQ86YN6 1023 aaKnown RBP21.35■■□□□ 1.01
CHD1L-208ENST00000488864 EEA1Q15075 1411 aa21.35■■□□□ 1.01
CHD1L-208ENST00000488864 IFT140Q96RY7 1462 aa21.32■■□□□ 1
CHD1L-208ENST00000488864 ZNF608Q9ULD9 1512 aaPredicted RBP21.31■■□□□ 1
CHD1L-208ENST00000488864 WDR97A6NE52 1622 aa21.3■■□□□ 1
CHD1L-208ENST00000488864 AQRO60306 1485 aaKnown RBP eCLIP21.29■■□□□ 16e-7■■■■■ 27.9
CHD1L-208ENST00000488864 IGF1RP08069 1367 aa21.26■□□□□ 0.99
CHD1L-208ENST00000488864 GAPVD1Q14C86 1478 aa21.25■□□□□ 0.99
CHD1L-208ENST00000488864 ABCA5Q8WWZ7 1642 aa21.22■□□□□ 0.99
CHD1L-208ENST00000488864 EIF4G3O43432 1585 aaKnown RBP21.16■□□□□ 0.98
CHD1L-208ENST00000488864 RAPGEF2Q9Y4G8 1499 aa21.16■□□□□ 0.98
CHD1L-208ENST00000488864 CARMIL1Q5VZK9 1371 aa21.15■□□□□ 0.98
CHD1L-208ENST00000488864 UBTFP17480 764 aaKnown RBP21.15■□□□□ 0.98
CHD1L-208ENST00000488864 PRXQ9BXM0 1461 aa21.14■□□□□ 0.98
CHD1L-208ENST00000488864 GRIN2BQ13224 1484 aa21.12■□□□□ 0.97
CHD1L-208ENST00000488864 ERICH3Q5RHP9 1530 aa21.11■□□□□ 0.97
CHD1L-208ENST00000488864 GOLGA3Q08378 1498 aa21.1■□□□□ 0.97
CHD1L-208ENST00000488864 KIF21BO75037 1637 aa21.1■□□□□ 0.97
CHD1L-208ENST00000488864 PBRM1Q86U86 1689 aa21.1■□□□□ 0.97
CHD1L-208ENST00000488864 SNAPC4Q5SXM2 1469 aa21.05■□□□□ 0.96
CHD1L-208ENST00000488864 CUL7Q14999 1698 aa21.03■□□□□ 0.96
CHD1L-208ENST00000488864 RANGAP1P46060 587 aaPredicted RBP21.02■□□□□ 0.95
CHD1L-208ENST00000488864 FBLN2P98095 1184 aa21.01■□□□□ 0.95
CHD1L-208ENST00000488864 FHAD1B1AJZ9 1412 aa20.99■□□□□ 0.95
CHD1L-208ENST00000488864 ADAMTS12P58397 1594 aa20.97■□□□□ 0.95
CHD1L-208ENST00000488864 TNIKQ9UKE5 1360 aa20.97■□□□□ 0.95
CHD1L-208ENST00000488864 CHMP7Q8WUX9 453 aaPredicted RBP20.96■□□□□ 0.95
CHD1L-208ENST00000488864 MAGI1Q96QZ7 1491 aaPredicted RBP20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms