RNA–Protein interactions for RNA: ENST00000488627.5

CTDSP1-209, Transcript of CTD small phosphatase 1, humanhuman

TSL 3

Gene CTDSP1, Length 1,118 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-209ENST00000488627 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.98□□□□□ -0.016e-9■■■■■ 501.9
CTDSP1-209ENST00000488627 AQRO60306 1485 aaKnown RBP eCLIP28.09■■■□□ 2.096e-12■■■■■ 82.1
CTDSP1-209ENST00000488627 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.57■□□□□ 0.083e-8■■■■■ 70.6
CTDSP1-209ENST00000488627 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.5■■□□□ 1.517e-9■■■■■ 61
CTDSP1-209ENST00000488627 UPF1Q92900 1129 aaKnown RBP eCLIP22.35■■□□□ 1.173e-11■■■■■ 59.9
CTDSP1-209ENST00000488627 SF3B1O75533 1304 aaKnown RBP eCLIP17.4■□□□□ 0.389e-7■■■■■ 57.4
CTDSP1-209ENST00000488627 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.69■■□□□ 1.73e-9■■■■■ 48.7
CTDSP1-209ENST00000488627 PCBP1Q15365 356 aaKnown RBP eCLIP17.7■□□□□ 0.422e-6■■■■■ 43
CTDSP1-209ENST00000488627 AKAP1Q92667 903 aaKnown RBP eCLIP13.98□□□□□ -0.172e-19■■■■■ 40.4
CTDSP1-209ENST00000488627 ZC3H11AO75152 810 aaKnown RBP eCLIP17.57■□□□□ 0.42e-6■■■■■ 37.4
CTDSP1-209ENST00000488627 DDX6P26196 483 aaKnown RBP eCLIP16.95■□□□□ 0.35e-6■■■■■ 34.8
CTDSP1-209ENST00000488627 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.55■□□□□ 0.241e-8■■■■■ 33.1
CTDSP1-209ENST00000488627 EFTUD2Q15029 972 aaKnown RBP eCLIP15.21■□□□□ 0.035e-14■■■■■ 29
CTDSP1-209ENST00000488627 PABPN1Q86U42 306 aaKnown RBP eCLIP31.97■■■□□ 2.716e-15■■■■■ 28.9
CTDSP1-209ENST00000488627 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.76□□□□□ -0.053e-6■■■■■ 28.5
CTDSP1-209ENST00000488627 SMNDC1O75940 238 aaKnown RBP eCLIP14.25□□□□□ -0.133e-7■■■■■ 27.2
CTDSP1-209ENST00000488627 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.45□□□□□ -0.265e-8■■■■□ 25.6
CTDSP1-209ENST00000488627 FKBP4Q02790 459 aaKnown RBP eCLIP20.42■□□□□ 0.863e-6■■■■□ 20.1
CTDSP1-209ENST00000488627 RBFOX2O43251 390 aaKnown RBP eCLIP12.34□□□□□ -0.435e-6■■■□□ 19.2
CTDSP1-209ENST00000488627 NONOQ15233 471 aaKnown RBP eCLIP18.09■□□□□ 0.491e-9■■■□□ 18.4
CTDSP1-209ENST00000488627 GTF2F1P35269 517 aaKnown RBP eCLIP17.58■□□□□ 0.42e-11■■■□□ 17.4
CTDSP1-209ENST00000488627 SF3A3Q12874 501 aaKnown RBP eCLIP14.22□□□□□ -0.137e-7■■■□□ 16.8
CTDSP1-209ENST00000488627 PPIGQ13427 754 aaKnown RBP eCLIP18.19■□□□□ 0.55e-8■■■□□ 16.4
CTDSP1-209ENST00000488627 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.37■□□□□ 0.215e-7■■■□□ 16
CTDSP1-209ENST00000488627 PRPF4O43172 522 aaKnown RBP eCLIP15.12■□□□□ 0.019e-7■■■□□ 15.5
CTDSP1-209ENST00000488627 CDC40O60508 579 aaKnown RBP eCLIP14.63□□□□□ -0.071e-7■■■□□ 15
CTDSP1-209ENST00000488627 PCBP2Q15366 365 aaKnown RBP eCLIP15.04■□□□□ -06e-8■■□□□ 14.4
CTDSP1-209ENST00000488627 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.19■□□□□ 0.55e-11■■□□□ 13.8
CTDSP1-209ENST00000488627 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.08■□□□□ 07e-7■■□□□ 13.2
CTDSP1-209ENST00000488627 RBM5P52756 815 aaKnown RBP eCLIP19.71■□□□□ 0.752e-6■■□□□ 13.1
CTDSP1-209ENST00000488627 NCBP2P52298 156 aaKnown RBP eCLIP14.64□□□□□ -0.071e-11■■□□□ 13
CTDSP1-209ENST00000488627 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.88□□□□□ -0.031e-14■■□□□ 13
CTDSP1-209ENST00000488627 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.78■□□□□ 0.61e-6■■□□□ 12.9
CTDSP1-209ENST00000488627 PTBP1P26599 531 aaKnown RBP eCLIP12.22□□□□□ -0.452e-6■■□□□ 12.7
CTDSP1-209ENST00000488627 SF3B4Q15427 424 aaKnown RBP eCLIP14.42□□□□□ -0.19e-8■■□□□ 12.6
CTDSP1-209ENST00000488627 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.9□□□□□ -0.027e-6■■□□□ 11.8
CTDSP1-209ENST00000488627 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.53■□□□□ 0.241e-13■■□□□ 11.5
CTDSP1-209ENST00000488627 NKRFO15226 690 aaKnown RBP eCLIP18.41■□□□□ 0.541e-12■□□□□ 11.3
CTDSP1-209ENST00000488627 DDX3XO00571 662 aaKnown RBP eCLIP16.44■□□□□ 0.221e-9■□□□□ 10.9
CTDSP1-209ENST00000488627 TROVE2P10155 538 aaKnown RBP eCLIP14.23□□□□□ -0.132e-13■□□□□ 10.5
CTDSP1-209ENST00000488627 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.3□□□□□ -0.287e-9■□□□□ 10.4
CTDSP1-209ENST00000488627 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.33■□□□□ 0.685e-6■□□□□ 10.3
CTDSP1-209ENST00000488627 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.42■■□□□ 1.54e-17■□□□□ 10.2
CTDSP1-209ENST00000488627 XRCC6P12956 609 aaKnown RBP eCLIP17.82■□□□□ 0.448e-6■□□□□ 10.2
CTDSP1-209ENST00000488627 YBX3P16989 372 aaKnown RBP eCLIP20.91■□□□□ 0.941e-6■□□□□ 10.2
CTDSP1-209ENST00000488627 EIF3HO15372 352 aaKnown RBP eCLIP15.33■□□□□ 0.045e-6■□□□□ 8.9
CTDSP1-209ENST00000488627 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.18■□□□□ 0.341e-20■□□□□ 8.8
CTDSP1-209ENST00000488627 HNRNPKP61978 463 aaKnown RBP eCLIP15.99■□□□□ 0.154e-6■□□□□ 8.8
CTDSP1-209ENST00000488627 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.56■□□□□ 0.081e-7■□□□□ 8.2
CTDSP1-209ENST00000488627 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.5■□□□□ 0.712e-6■□□□□ 8
Retrieved 50 of 50 RNA–protein pairs in 11 ms