RNA–Protein interactions for RNA: ENST00000488023.1

HFM1-208, Transcript of HFM1, ATP dependent DNA helicase homolog, humanhuman

TSL 5

Gene HFM1, Length 1,699 nt, Biotype retained intron.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HFM1-208ENST00000488023 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP2.07□□□□□ -2.085e-23■■■■■ 209.5
HFM1-208ENST00000488023 AATFQ9NY61 560 aaKnown RBP eCLIP3.56□□□□□ -1.841e-7■■■■■ 182.5
HFM1-208ENST00000488023 SF3B1O75533 1304 aaKnown RBP eCLIP3.31□□□□□ -1.883e-6■■■■■ 135.2
HFM1-208ENST00000488023 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.41□□□□□ -1.863e-12■■■■■ 104.8
HFM1-208ENST00000488023 GPKOWQ92917 476 aaPredicted RBP eCLIP6.58□□□□□ -1.361e-17■■■■■ 88.5
HFM1-208ENST00000488023 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.64□□□□□ -1.518e-7■■■■■ 88.3
HFM1-208ENST00000488023 SF3B4Q15427 424 aaKnown RBP eCLIP3.19□□□□□ -1.97e-10■■■■■ 81.8
HFM1-208ENST00000488023 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.33□□□□□ -1.729e-9■■■■■ 71.9
HFM1-208ENST00000488023 DDX21Q9NR30 783 aaKnown RBP eCLIP4.45□□□□□ -1.76e-18■■■■■ 61.7
HFM1-208ENST00000488023 FTOQ9C0B1 505 aaKnown RBP eCLIP3.94□□□□□ -1.781e-14■■■■■ 57.8
HFM1-208ENST00000488023 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.89□□□□□ -1.472e-6■■■■■ 57.7
HFM1-208ENST00000488023 TROVE2P10155 538 aaKnown RBP eCLIP3.14□□□□□ -1.914e-12■■■■■ 55.3
HFM1-208ENST00000488023 NOLC1Q14978 699 aaKnown RBP eCLIP4.12□□□□□ -1.752e-13■■■■■ 55
HFM1-208ENST00000488023 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.54□□□□□ -21e-8■■■■■ 51.6
HFM1-208ENST00000488023 KHSRPQ92945 711 aaKnown RBP eCLIP9.01□□□□□ -0.971e-12■■■■■ 51.6
HFM1-208ENST00000488023 PCBP1Q15365 356 aaKnown RBP eCLIP4.62□□□□□ -1.677e-11■■■■■ 49.2
HFM1-208ENST00000488023 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.77□□□□□ -1.819e-7■■■■■ 45.1
HFM1-208ENST00000488023 NIPBLQ6KC79 2804 aaeCLIP1.19□□□□□ -2.222e-6■■■■■ 44.3
HFM1-208ENST00000488023 EIF3HO15372 352 aaKnown RBP eCLIP3.08□□□□□ -1.925e-8■■■■■ 43.1
HFM1-208ENST00000488023 DDX6P26196 483 aaKnown RBP eCLIP3.7□□□□□ -1.823e-7■■■■■ 42.7
HFM1-208ENST00000488023 WRNQ14191 1432 aaPredicted RBP eCLIP2.37□□□□□ -2.032e-12■■■■■ 41.8
HFM1-208ENST00000488023 PTBP1P26599 531 aaKnown RBP eCLIP3.22□□□□□ -1.894e-7■■■■■ 36.6
HFM1-208ENST00000488023 NIP7Q9Y221 180 aaKnown RBP eCLIP3.3□□□□□ -1.882e-9■■■■■ 36.3
HFM1-208ENST00000488023 RPS11P62280 158 aaKnown RBP eCLIP2.15□□□□□ -2.072e-8■■■■■ 34.8
HFM1-208ENST00000488023 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.01□□□□□ -1.619e-7■■■■■ 34
HFM1-208ENST00000488023 DKC1O60832 514 aaKnown RBP eCLIP4□□□□□ -1.772e-14■■■■■ 31.9
HFM1-208ENST00000488023 PPIGQ13427 754 aaKnown RBP eCLIP3.63□□□□□ -1.831e-8■■■■■ 31.6
HFM1-208ENST00000488023 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7□□□□□ -1.292e-6■■■■■ 31.4
HFM1-208ENST00000488023 XRCC6P12956 609 aaKnown RBP eCLIP3.87□□□□□ -1.796e-9■■■■■ 29.7
HFM1-208ENST00000488023 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.24□□□□□ -1.739e-8■■■■■ 29.2
HFM1-208ENST00000488023 FUSP35637 526 aaKnown RBP eCLIP1.93□□□□□ -2.11e-14■■■■■ 28.9
HFM1-208ENST00000488023 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.71□□□□□ -1.823e-10■■■■■ 27.5
HFM1-208ENST00000488023 HNRNPUQ00839 825 aaKnown RBP eCLIP5.11□□□□□ -1.598e-8■■■■□ 24.4
HFM1-208ENST00000488023 RPS3P23396 243 aaKnown RBP eCLIP2.12□□□□□ -2.078e-15■■■■□ 24.3
HFM1-208ENST00000488023 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.34□□□□□ -1.872e-7■■■■□ 23.1
HFM1-208ENST00000488023 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.51□□□□□ -1.853e-19■■■■□ 21.7
HFM1-208ENST00000488023 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.4□□□□□ -1.862e-7■■■■□ 21.5
HFM1-208ENST00000488023 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.18□□□□□ -1.588e-6■■■■□ 21.4
HFM1-208ENST00000488023 ZRANB2O95218 330 aaKnown RBP eCLIP4.42□□□□□ -1.71e-8■■■■□ 21.4
HFM1-208ENST00000488023 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.78□□□□□ -1.323e-9■■■■□ 20.1
HFM1-208ENST00000488023 METAP2P50579 478 aaKnown RBP eCLIP3.48□□□□□ -1.854e-8■■■■□ 19.9
HFM1-208ENST00000488023 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.05□□□□□ -1.63e-12■■■■□ 19.7
HFM1-208ENST00000488023 AARSP49588 968 aaKnown RBP eCLIP4□□□□□ -1.776e-7■■■■□ 19.6
HFM1-208ENST00000488023 NSUN2Q08J23 767 aaKnown RBP eCLIP3.96□□□□□ -1.781e-9■■■■□ 19.5
HFM1-208ENST00000488023 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.63□□□□□ -1.833e-13■■■□□ 18.8
HFM1-208ENST00000488023 AQRO60306 1485 aaKnown RBP eCLIP2.8□□□□□ -1.961e-7■■■□□ 17.9
HFM1-208ENST00000488023 PUS1Q9Y606 427 aaKnown RBP eCLIP2.83□□□□□ -1.968e-13■■■□□ 17.8
HFM1-208ENST00000488023 EFTUD2Q15029 972 aaKnown RBP eCLIP3.3□□□□□ -1.882e-7■■■□□ 17.5
HFM1-208ENST00000488023 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.13□□□□□ -1.592e-25■■■□□ 17.4
HFM1-208ENST00000488023 LARP4Q71RC2 724 aaKnown RBP eCLIP4.03□□□□□ -1.769e-13■■■□□ 17
HFM1-208ENST00000488023 AGGF1Q8N302 714 aaeCLIP5.58□□□□□ -1.521e-6■■■□□ 16.8
HFM1-208ENST00000488023 RBM22Q9NW64 420 aaKnown RBP eCLIP2.58□□□□□ -22e-8■■■□□ 16.6
HFM1-208ENST00000488023 MATR3P43243 847 aaKnown RBP eCLIP3.62□□□□□ -1.836e-7■■■□□ 16.1
HFM1-208ENST00000488023 WDR43Q15061 677 aaKnown RBP eCLIP3.18□□□□□ -1.91e-9■■■□□ 15.4
HFM1-208ENST00000488023 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.06□□□□□ -1.924e-7■■■□□ 15.2
HFM1-208ENST00000488023 NKRFO15226 690 aaKnown RBP eCLIP4.28□□□□□ -1.722e-12■■□□□ 14.5
HFM1-208ENST00000488023 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.34□□□□□ -1.712e-6■■□□□ 13.8
HFM1-208ENST00000488023 NCBP2P52298 156 aaKnown RBP eCLIP2.69□□□□□ -1.984e-8■■□□□ 12
HFM1-208ENST00000488023 HNRNPA1P09651 372 aaKnown RBP eCLIP4.04□□□□□ -1.766e-7■■□□□ 12
HFM1-208ENST00000488023 ZC3H11AO75152 810 aaKnown RBP eCLIP3.63□□□□□ -1.835e-7■■□□□ 11.8
HFM1-208ENST00000488023 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.66□□□□□ -1.827e-6■■□□□ 11.8
HFM1-208ENST00000488023 DDX3XO00571 662 aaKnown RBP eCLIP4.24□□□□□ -1.735e-8■■□□□ 11.4
HFM1-208ENST00000488023 SAFBQ15424 915 aaKnown RBP eCLIP4.48□□□□□ -1.693e-6■□□□□ 10.6
HFM1-208ENST00000488023 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.64□□□□□ -1.834e-8■□□□□ 9.2
HFM1-208ENST00000488023 PUM1Q14671 1186 aaKnown RBP eCLIP4.7□□□□□ -1.665e-6■□□□□ 8.5
HFM1-208ENST00000488023 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.02□□□□□ -1.931e-6■□□□□ 8.1
Retrieved 66 of 66 RNA–protein pairs in 10.6 ms