RNA–Protein interactions for RNA: ENST00000487939.1

PTEN-204, Transcript of phosphatase and tensin homolog, humanhuman

TSL 3

Gene PTEN, Length 477 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTEN-204ENST00000487939 AEBP2Q6ZN18 517 aaPredicted RBP25.01■■□□□ 1.59
PTEN-204ENST00000487939 CHIC1Q5VXU3 224 aa23.38■■□□□ 1.33
PTEN-204ENST00000487939 SENP3Q9H4L4 574 aaPredicted RBP21.41■■□□□ 1.02
PTEN-204ENST00000487939 PHF23Q9BUL5 403 aaPredicted RBP21.06■□□□□ 0.96
PTEN-204ENST00000487939 FOXD1Q16676 465 aa20■□□□□ 0.79
PTEN-204ENST00000487939 POTEDQ86YR6 584 aa19.12■□□□□ 0.65
PTEN-204ENST00000487939 PLPPR3Q6T4P5 718 aa18.89■□□□□ 0.61
PTEN-204ENST00000487939 MSH5O43196 834 aa18.88■□□□□ 0.61
PTEN-204ENST00000487939 PIAS4Q8N2W9 510 aaPredicted RBP18.57■□□□□ 0.56
PTEN-204ENST00000487939 PPP6R1Q9UPN7 881 aa18.37■□□□□ 0.53
PTEN-204ENST00000487939 ADRA2BP18089 450 aa18.27■□□□□ 0.52
PTEN-204ENST00000487939 DMRT2Q9Y5R5 561 aa16.92■□□□□ 0.3
PTEN-204ENST00000487939 MAPK8IP2Q13387 824 aaPredicted RBP16.9■□□□□ 0.3
PTEN-204ENST00000487939 SCAF1Q9H7N4 1312 aaKnown RBP16.74■□□□□ 0.27
PTEN-204ENST00000487939 PPP4R3CPQ6ZMV5 832 aa16.63■□□□□ 0.25
PTEN-204ENST00000487939 CACNB1Q02641 598 aaPredicted RBP16.42■□□□□ 0.22
PTEN-204ENST00000487939 NCBP3Q53F19 620 aaKnown RBP16.29■□□□□ 0.2
PTEN-204ENST00000487939 KCNA4P22459 653 aa16.28■□□□□ 0.2
PTEN-204ENST00000487939 DCAF8L1A6NGE4 600 aa16.18■□□□□ 0.18
PTEN-204ENST00000487939 CNKSR2Q8WXI2 1034 aa16.17■□□□□ 0.18
PTEN-204ENST00000487939 HOXD11P31277 338 aaPredicted RBP16.15■□□□□ 0.18
PTEN-204ENST00000487939 RNF39Q9H2S5 420 aa16.08■□□□□ 0.16
PTEN-204ENST00000487939 NPM3O75607 178 aaKnown RBP15.95■□□□□ 0.14
PTEN-204ENST00000487939 RNF216Q9NWF9 866 aaPredicted RBP15.9■□□□□ 0.14
PTEN-204ENST00000487939 C1QBPQ07021 282 aaKnown RBP15.82■□□□□ 0.12
PTEN-204ENST00000487939 DNAJC5BQ9UF47 199 aa15.72■□□□□ 0.11
PTEN-204ENST00000487939 SLC4A1APQ9BWU0 796 aaKnown RBP15.56■□□□□ 0.08
PTEN-204ENST00000487939 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.33■□□□□ 0.04
PTEN-204ENST00000487939 EHMT2Q96KQ7 1210 aa15.16■□□□□ 0.02
PTEN-204ENST00000487939 SLC4A2P04920 1241 aa15.02■□□□□ -0
PTEN-204ENST00000487939 FOXD4L1Q9NU39 408 aa15.02■□□□□ -0
PTEN-204ENST00000487939 U3KPZ7 1027 aaPredicted RBP15□□□□□ -0.01
PTEN-204ENST00000487939 ZBTB22O15209 634 aa14.94□□□□□ -0.02
PTEN-204ENST00000487939 CSRNP3Q8WYN3 585 aa14.94□□□□□ -0.02
PTEN-204ENST00000487939 DSG3P32926 999 aa14.92□□□□□ -0.02
PTEN-204ENST00000487939 POTEHQ6S545 545 aa14.9□□□□□ -0.02
PTEN-204ENST00000487939 SPINK5Q9NQ38 1064 aaPredicted RBP14.89□□□□□ -0.03
PTEN-204ENST00000487939 CAPN15O75808 1086 aa14.87□□□□□ -0.03
PTEN-204ENST00000487939 MYCNP04198 464 aaPredicted RBP14.8□□□□□ -0.04
PTEN-204ENST00000487939 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.69□□□□□ -0.06
PTEN-204ENST00000487939 HNRNPUL2Q1KMD3 747 aaKnown RBP14.69□□□□□ -0.06
PTEN-204ENST00000487939 SAMD1Q6SPF0 538 aaPredicted RBP14.61□□□□□ -0.07
PTEN-204ENST00000487939 APLP2Q06481 763 aa14.55□□□□□ -0.08
PTEN-204ENST00000487939 ATXN8OSP0DMR3 200 aa14.53□□□□□ -0.08
PTEN-204ENST00000487939 ZNF219Q9P2Y4 722 aaPredicted RBP14.53□□□□□ -0.08
PTEN-204ENST00000487939 TRHP20396 242 aaPredicted RBP14.52□□□□□ -0.09
PTEN-204ENST00000487939 ABCB7O75027 752 aa14.47□□□□□ -0.09
PTEN-204ENST00000487939 ATF5Q9Y2D1 282 aaPredicted RBP14.29□□□□□ -0.12
PTEN-204ENST00000487939 RBM42Q9BTD8 480 aaKnown RBP14.25□□□□□ -0.13
PTEN-204ENST00000487939 CHRDL2Q6WN34 429 aa14.08□□□□□ -0.16
PTEN-204ENST00000487939 POLA2Q14181 598 aa14.05□□□□□ -0.16
PTEN-204ENST00000487939 ZBTB12Q9Y330 459 aaPredicted RBP13.87□□□□□ -0.19
PTEN-204ENST00000487939 AKT1S1Q96B36 256 aa13.83□□□□□ -0.2
PTEN-204ENST00000487939 FBLN2P98095 1184 aa13.82□□□□□ -0.2
PTEN-204ENST00000487939 SP7Q8TDD2 431 aaPredicted RBP13.78□□□□□ -0.2
PTEN-204ENST00000487939 MKRN4PQ13434 485 aaPredicted RBP13.69□□□□□ -0.22
PTEN-204ENST00000487939 REM2Q8IYK8 340 aaPredicted RBP13.68□□□□□ -0.22
PTEN-204ENST00000487939 PIP4P2Q8N4L2 257 aa13.66□□□□□ -0.22
PTEN-204ENST00000487939 OSCARQ8IYS5 282 aa13.62□□□□□ -0.23
PTEN-204ENST00000487939 PITPNM1O00562 1244 aa13.54□□□□□ -0.24
PTEN-204ENST00000487939 FKBP8Q14318 412 aa13.54□□□□□ -0.24
PTEN-204ENST00000487939 FXR2P51116 673 aaKnown RBP eCLIP13.53□□□□□ -0.24
PTEN-204ENST00000487939 HAX1O00165 279 aa13.49□□□□□ -0.25
PTEN-204ENST00000487939 SPDYE4A6NLX3 237 aa13.48□□□□□ -0.25
PTEN-204ENST00000487939 SPDYE2BA6NHP3 402 aa13.46□□□□□ -0.25
PTEN-204ENST00000487939 SPDYE6P0CI01 402 aa13.46□□□□□ -0.25
PTEN-204ENST00000487939 SPDYE2Q495Y8 402 aa13.46□□□□□ -0.25
PTEN-204ENST00000487939 ZNF692Q9BU19 519 aaPredicted RBP13.39□□□□□ -0.27
PTEN-204ENST00000487939 SSUH2Q9Y2M2 353 aa13.32□□□□□ -0.28
PTEN-204ENST00000487939 EVX2Q03828 476 aa13.31□□□□□ -0.28
PTEN-204ENST00000487939 PROM2Q8N271 834 aa13.24□□□□□ -0.29
PTEN-204ENST00000487939 PABPN1Q86U42 306 aaKnown RBP eCLIP13.21□□□□□ -0.29
PTEN-204ENST00000487939 PRKAR2AP13861 404 aaKnown RBP13.18□□□□□ -0.3
PTEN-204ENST00000487939 SPDYE1Q8NFV5 336 aaPredicted RBP13.16□□□□□ -0.3
PTEN-204ENST00000487939 CLEC11AQ9Y240 323 aa13.13□□□□□ -0.31
PTEN-204ENST00000487939 FBXO3Q9UK99 471 aa13.12□□□□□ -0.31
PTEN-204ENST00000487939 C19orf67A6NJJ6 358 aa13.11□□□□□ -0.31
PTEN-204ENST00000487939 STAG3Q9UJ98 1225 aa13.07□□□□□ -0.32
PTEN-204ENST00000487939 GABBR2O75899 941 aa13□□□□□ -0.33
PTEN-204ENST00000487939 CHADLQ6NUI6 762 aa12.94□□□□□ -0.34
PTEN-204ENST00000487939 LHX8Q68G74 356 aa12.9□□□□□ -0.34
PTEN-204ENST00000487939 VASPP50552 380 aaPredicted RBP12.88□□□□□ -0.35
PTEN-204ENST00000487939 PRR29P0C7W0 189 aa12.87□□□□□ -0.35
PTEN-204ENST00000487939 PLEKHG5O94827 1062 aa12.8□□□□□ -0.36
PTEN-204ENST00000487939 PLCD3Q8N3E9 789 aa12.79□□□□□ -0.36
PTEN-204ENST00000487939 MIER1Q8N108 512 aa12.78□□□□□ -0.36
PTEN-204ENST00000487939 CD44P16070 742 aaKnown RBP12.74□□□□□ -0.37
PTEN-204ENST00000487939 POTEIP0CG38 1075 aa12.73□□□□□ -0.37
PTEN-204ENST00000487939 FARP1Q9Y4F1 1045 aaPredicted RBP12.72□□□□□ -0.37
PTEN-204ENST00000487939 CLCN6P51797 869 aa12.7□□□□□ -0.38
PTEN-204ENST00000487939 ZBTB47Q9UFB7 747 aaPredicted RBP12.69□□□□□ -0.38
PTEN-204ENST00000487939 KLHL34Q8N239 644 aa12.67□□□□□ -0.38
PTEN-204ENST00000487939 CREBZFQ9NS37 354 aa12.67□□□□□ -0.38
PTEN-204ENST00000487939 IFNLR1Q8IU57 520 aaPredicted RBP12.66□□□□□ -0.38
PTEN-204ENST00000487939 SPOCK2Q92563 424 aa12.57□□□□□ -0.4
PTEN-204ENST00000487939 NPM1P06748 294 aaKnown RBP eCLIP12.55□□□□□ -0.4
PTEN-204ENST00000487939 ZNF579Q8NAF0 562 aaKnown RBP12.55□□□□□ -0.4
PTEN-204ENST00000487939 DCBLD2Q96PD2 775 aa12.54□□□□□ -0.4
PTEN-204ENST00000487939 MNX1P50219 401 aaPredicted RBP12.52□□□□□ -0.41
PTEN-204ENST00000487939 AMER1Q5JTC6 1135 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms