RNA–Protein interactions for RNA: ENST00000487222.5

EPHB4-206, Transcript of EPH receptor B4, humanhuman

TSL 1 (best)

Gene EPHB4, Length 5,058 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB4-206ENST00000487222 DCAF8L2P0C7V8 631 aa25.25■■□□□ 1.63
EPHB4-206ENST00000487222 NISCHQ9Y2I1 1504 aa24.68■■□□□ 1.54
EPHB4-206ENST00000487222 SUPT5HO00267 1087 aaKnown RBP24.17■■□□□ 1.46
EPHB4-206ENST00000487222 SHROOM4Q9ULL8 1493 aa23.67■■□□□ 1.38
EPHB4-206ENST00000487222 EHMT2Q96KQ7 1210 aa23.23■■□□□ 1.31
EPHB4-206ENST00000487222 PELP1Q8IZL8 1130 aaKnown RBP23.21■■□□□ 1.31
EPHB4-206ENST00000487222 APLP2Q06481 763 aa22.97■■□□□ 1.27
EPHB4-206ENST00000487222 PCGF6Q9BYE7 350 aa22.83■■□□□ 1.24
EPHB4-206ENST00000487222 FAM9AQ8IZU1 332 aaPredicted RBP22.76■■□□□ 1.23
EPHB4-206ENST00000487222 ZEB1P37275 1124 aaPredicted RBP22.58■■□□□ 1.21
EPHB4-206ENST00000487222 TTBK1Q5TCY1 1321 aaPredicted RBP22.51■■□□□ 1.19
EPHB4-206ENST00000487222 CENPBP07199 599 aaPredicted RBP22.51■■□□□ 1.19
EPHB4-206ENST00000487222 TRIM41Q8WV44 630 aa22.41■■□□□ 1.18
EPHB4-206ENST00000487222 CCER1Q8TC90 406 aaPredicted RBP22.36■■□□□ 1.17
EPHB4-206ENST00000487222 RANGAP1P46060 587 aaPredicted RBP22.18■■□□□ 1.14
EPHB4-206ENST00000487222 ERICH6Q7L0X2 663 aa22.16■■□□□ 1.14
EPHB4-206ENST00000487222 UBTFP17480 764 aaKnown RBP22.1■■□□□ 1.13
EPHB4-206ENST00000487222 MYT1Q01538 1121 aa21.99■■□□□ 1.11
EPHB4-206ENST00000487222 ATP1B4Q9UN42 357 aaPredicted RBP21.98■■□□□ 1.11
EPHB4-206ENST00000487222 NEFLP07196 543 aa21.92■■□□□ 1.1
EPHB4-206ENST00000487222 TRIM26Q12899 539 aaPredicted RBP21.91■■□□□ 1.1
EPHB4-206ENST00000487222 YTHDC1Q96MU7 727 aaKnown RBP21.87■■□□□ 1.09
EPHB4-206ENST00000487222 HRCP23327 699 aa21.81■■□□□ 1.08
EPHB4-206ENST00000487222 PPARGC1BQ86YN6 1023 aaKnown RBP21.75■■□□□ 1.07
EPHB4-206ENST00000487222 CHIC1Q5VXU3 224 aa21.6■■□□□ 1.05
EPHB4-206ENST00000487222 LOC105371045A0A1W2PR82 267 aa21.53■■□□□ 1.04
EPHB4-206ENST00000487222 ITGAEP38570 1179 aa21.37■■□□□ 1.01
EPHB4-206ENST00000487222 HNRNPUL2Q1KMD3 747 aaKnown RBP21.34■■□□□ 1.01
EPHB4-206ENST00000487222 DAXXQ9UER7 740 aaPredicted RBP21.21■□□□□ 0.99
EPHB4-206ENST00000487222 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.19■□□□□ 0.98
EPHB4-206ENST00000487222 POLR3GLQ9BT43 218 aa21.18■□□□□ 0.98
EPHB4-206ENST00000487222 DIEXFQ68CQ4 756 aaKnown RBP21.17■□□□□ 0.98
EPHB4-206ENST00000487222 ABCC9O60706 1549 aa21.14■□□□□ 0.97
EPHB4-206ENST00000487222 PABPN1Q86U42 306 aaKnown RBP eCLIP21.02■□□□□ 0.96
EPHB4-206ENST00000487222 MYT1LQ9UL68 1186 aa21.02■□□□□ 0.96
EPHB4-206ENST00000487222 CNGB1Q14028 1251 aaPredicted RBP20.96■□□□□ 0.95
EPHB4-206ENST00000487222 FAM50AQ14320 339 aaKnown RBP20.84■□□□□ 0.93
EPHB4-206ENST00000487222 RTL5Q5HYW3 569 aaPredicted RBP20.83■□□□□ 0.93
EPHB4-206ENST00000487222 GTF3C3Q9Y5Q9 886 aa20.78■□□□□ 0.92
EPHB4-206ENST00000487222 ZNF316A6NFI3 1004 aaPredicted RBP20.72■□□□□ 0.91
EPHB4-206ENST00000487222 TRIM52Q96A61 297 aa20.72■□□□□ 0.91
EPHB4-206ENST00000487222 CLSPNQ9HAW4 1339 aa20.72■□□□□ 0.91
EPHB4-206ENST00000487222 NEUROD1Q13562 356 aa20.72■□□□□ 0.91
EPHB4-206ENST00000487222 SLC4A1APQ9BWU0 796 aaKnown RBP20.67■□□□□ 0.9
EPHB4-206ENST00000487222 ANP32CO43423 234 aa20.67■□□□□ 0.9
EPHB4-206ENST00000487222 BCANQ96GW7 911 aa20.62■□□□□ 0.89
EPHB4-206ENST00000487222 CDK11AQ9UQ88 783 aaPredicted RBP20.56■□□□□ 0.88
EPHB4-206ENST00000487222 ACIN1Q9UKV3 1341 aaKnown RBP20.54■□□□□ 0.88
EPHB4-206ENST00000487222 CSRNP3Q8WYN3 585 aa20.52■□□□□ 0.88
EPHB4-206ENST00000487222 ZNF326Q5BKZ1 582 aaKnown RBP20.46■□□□□ 0.87
EPHB4-206ENST00000487222 ZCCHC6Q5VYS8 1495 aaKnown RBP20.43■□□□□ 0.86
EPHB4-206ENST00000487222 FBLN2P98095 1184 aa20.43■□□□□ 0.86
EPHB4-206ENST00000487222 SCRIBQ14160 1630 aa20.36■□□□□ 0.85
EPHB4-206ENST00000487222 P3H3Q8IVL6 736 aa20.32■□□□□ 0.84
EPHB4-206ENST00000487222 DCAF1Q9Y4B6 1507 aa20.28■□□□□ 0.84
EPHB4-206ENST00000487222 ZBTB47Q9UFB7 747 aaPredicted RBP20.27■□□□□ 0.84
EPHB4-206ENST00000487222 ANP32AP39687 249 aaKnown RBP20.21■□□□□ 0.83
EPHB4-206ENST00000487222 CANXP27824 592 aaKnown RBP20.21■□□□□ 0.83
EPHB4-206ENST00000487222 ARID3CA6NKF2 412 aa20.19■□□□□ 0.82
EPHB4-206ENST00000487222 CCDC180Q9P1Z9 1646 aa20.16■□□□□ 0.82
EPHB4-206ENST00000487222 FKBP8Q14318 412 aa20.12■□□□□ 0.81
EPHB4-206ENST00000487222 TONSLQ96HA7 1378 aa20.12■□□□□ 0.81
EPHB4-206ENST00000487222 NEFMP07197 916 aa20.1■□□□□ 0.81
EPHB4-206ENST00000487222 ZNF777Q9ULD5 760 aaPredicted RBP20.09■□□□□ 0.81
EPHB4-206ENST00000487222 HNRNPUQ00839 825 aaKnown RBP eCLIP20.04■□□□□ 0.8
EPHB4-206ENST00000487222 DDX10Q13206 875 aaKnown RBP20.03■□□□□ 0.8
EPHB4-206ENST00000487222 NPM2Q86SE8 214 aaKnown RBP20.02■□□□□ 0.79
EPHB4-206ENST00000487222 BCL11AQ9H165 835 aa19.96■□□□□ 0.79
EPHB4-206ENST00000487222 FAM9BQ8IZU0 186 aa19.93■□□□□ 0.78
EPHB4-206ENST00000487222 SLC24A1O60721 1099 aa19.92■□□□□ 0.78
EPHB4-206ENST00000487222 SCAF1Q9H7N4 1312 aaKnown RBP19.91■□□□□ 0.78
EPHB4-206ENST00000487222 RB1CC1Q8TDY2 1594 aa19.84■□□□□ 0.77
EPHB4-206ENST00000487222 UPF2Q9HAU5 1272 aaKnown RBP19.84■□□□□ 0.77
EPHB4-206ENST00000487222 MIER1Q8N108 512 aa19.83■□□□□ 0.76
EPHB4-206ENST00000487222 CCDC136Q96JN2 1154 aa19.83■□□□□ 0.76
EPHB4-206ENST00000487222 TMC1Q8TDI8 760 aa19.82■□□□□ 0.76
EPHB4-206ENST00000487222 RSF1Q96T23 1441 aaPredicted RBP19.81■□□□□ 0.76
EPHB4-206ENST00000487222 ANP32BQ92688 251 aaKnown RBP19.8■□□□□ 0.76
EPHB4-206ENST00000487222 CLIP1P30622 1438 aa19.78■□□□□ 0.76
EPHB4-206ENST00000487222 HSP90AA1P07900 732 aaKnown RBP19.78■□□□□ 0.76
EPHB4-206ENST00000487222 MRS2Q9HD23 443 aa19.78■□□□□ 0.76
EPHB4-206ENST00000487222 CHIC2Q9UKJ5 165 aa19.78■□□□□ 0.76
EPHB4-206ENST00000487222 NPM1P06748 294 aaKnown RBP eCLIP19.77■□□□□ 0.76
EPHB4-206ENST00000487222 MTUS2Q5JR59 1369 aa19.76■□□□□ 0.75
EPHB4-206ENST00000487222 SALL2Q9Y467 1007 aaPredicted RBP19.75■□□□□ 0.75
EPHB4-206ENST00000487222 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.75■□□□□ 0.75
EPHB4-206ENST00000487222 EEA1Q15075 1411 aa19.75■□□□□ 0.75
EPHB4-206ENST00000487222 ESF1Q9H501 851 aaKnown RBP19.75■□□□□ 0.75
EPHB4-206ENST00000487222 EIF5BO60841 1220 aaKnown RBP19.72■□□□□ 0.75
EPHB4-206ENST00000487222 CHGAP10645 457 aaKnown RBP19.72■□□□□ 0.75
EPHB4-206ENST00000487222 TSPY4P0CV99 314 aa19.7■□□□□ 0.74
EPHB4-206ENST00000487222 TSPY10P0CW01 314 aa19.7■□□□□ 0.74
EPHB4-206ENST00000487222 NACADO15069 1562 aa19.69■□□□□ 0.74
EPHB4-206ENST00000487222 CHMP7Q8WUX9 453 aaPredicted RBP19.68■□□□□ 0.74
EPHB4-206ENST00000487222 WDR43Q15061 677 aaKnown RBP eCLIP19.67■□□□□ 0.74
EPHB4-206ENST00000487222 STAG3Q9UJ98 1225 aa19.67■□□□□ 0.74
EPHB4-206ENST00000487222 EIF4G2P78344 907 aaKnown RBP eCLIP19.66■□□□□ 0.74
EPHB4-206ENST00000487222 MYO15BQ96JP2 1530 aa19.65■□□□□ 0.74
EPHB4-206ENST00000487222 GOLGA3Q08378 1498 aa19.65■□□□□ 0.74
EPHB4-206ENST00000487222 NBR1Q14596 966 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms