RNA–Protein interactions for RNA: ENST00000486845.1

PHF1-208, Transcript of PHD finger protein 1, humanhuman

TSL 5

Gene PHF1, Length 1,099 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF1-208ENST00000486845 SF3B1O75533 1304 aaKnown RBP eCLIP22.25■■□□□ 1.152e-11■■■■■ 44.6
PHF1-208ENST00000486845 SRSF1Q07955 248 aaKnown RBP eCLIP20.05■□□□□ 0.89e-13■■■■■ 39.9
PHF1-208ENST00000486845 PPIGQ13427 754 aaKnown RBP eCLIP23.92■■□□□ 1.425e-10■■■■■ 38.8
PHF1-208ENST00000486845 PCBP1Q15365 356 aaKnown RBP eCLIP22.37■■□□□ 1.172e-6■■■■■ 34.8
PHF1-208ENST00000486845 EFTUD2Q15029 972 aaKnown RBP eCLIP18.56■□□□□ 0.561e-11■■■■□ 23.6
PHF1-208ENST00000486845 GPKOWQ92917 476 aaPredicted RBP eCLIP23.22■■□□□ 1.315e-9■■■■□ 21.7
PHF1-208ENST00000486845 ZC3H11AO75152 810 aaKnown RBP eCLIP22.57■■□□□ 1.21e-12■■■■□ 20.2
PHF1-208ENST00000486845 AQRO60306 1485 aaKnown RBP eCLIP37.05■■■■□ 3.529e-8■■■■□ 19.4
PHF1-208ENST00000486845 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP19.58■□□□□ 0.723e-9■■■□□ 19.2
PHF1-208ENST00000486845 PABPN1Q86U42 306 aaKnown RBP eCLIP42.55■■■■■ 4.45e-8■■■□□ 18.8
PHF1-208ENST00000486845 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.89■■■□□ 2.72e-15■■■□□ 18.3
PHF1-208ENST00000486845 DDX55Q8NHQ9 600 aaKnown RBP eCLIP25.27■■□□□ 1.641e-7■■■□□ 17.9
PHF1-208ENST00000486845 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.91■■□□□ 1.422e-25■■■□□ 17.4
PHF1-208ENST00000486845 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.16■■□□□ 1.461e-8■■■□□ 17.2
PHF1-208ENST00000486845 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.45■□□□□ 0.542e-6■■■□□ 16.1
PHF1-208ENST00000486845 ZNF622Q969S3 477 aaKnown RBP eCLIP26.97■■□□□ 1.911e-7■■■□□ 16
PHF1-208ENST00000486845 PRPF4O43172 522 aaKnown RBP eCLIP19.1■□□□□ 0.653e-12■■■□□ 15.9
PHF1-208ENST00000486845 U2AF2P26368 475 aaKnown RBP eCLIP21.83■■□□□ 1.093e-7■■■□□ 15.8
PHF1-208ENST00000486845 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.66■□□□□ 0.422e-43■■■□□ 15
PHF1-208ENST00000486845 UPF1Q92900 1129 aaKnown RBP eCLIP30.43■■■□□ 2.467e-8■■■□□ 14.7
PHF1-208ENST00000486845 RBFOX2O43251 390 aaKnown RBP eCLIP14.81□□□□□ -0.048e-9■■■□□ 14.6
PHF1-208ENST00000486845 AARSP49588 968 aaKnown RBP eCLIP21.82■■□□□ 1.081e-5■■□□□ 14
PHF1-208ENST00000486845 METAP2P50579 478 aaKnown RBP eCLIP22.66■■□□□ 1.224e-6■■□□□ 13.2
PHF1-208ENST00000486845 PABPC4Q13310 644 aaKnown RBP eCLIP24.74■■□□□ 1.552e-6■■□□□ 13.1
PHF1-208ENST00000486845 SF3B4Q15427 424 aaKnown RBP eCLIP18.41■□□□□ 0.545e-10■■□□□ 12.9
PHF1-208ENST00000486845 LSM11P83369 360 aaKnown RBP eCLIP17.61■□□□□ 0.417e-8■■□□□ 12.3
PHF1-208ENST00000486845 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.46■■■□□ 2.633e-6■■□□□ 11.7
PHF1-208ENST00000486845 GTF2F1P35269 517 aaKnown RBP eCLIP22.95■■□□□ 1.261e-7■□□□□ 11.3
PHF1-208ENST00000486845 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.45■□□□□ 0.78e-10■□□□□ 10.7
PHF1-208ENST00000486845 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.68■□□□□ 0.421e-6■□□□□ 10.2
PHF1-208ENST00000486845 DDX6P26196 483 aaKnown RBP eCLIP21.65■■□□□ 1.067e-7■□□□□ 9.7
PHF1-208ENST00000486845 NOLC1Q14978 699 aaKnown RBP eCLIP21.88■■□□□ 1.099e-9■□□□□ 9.2
PHF1-208ENST00000486845 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.8■■■□□ 2.043e-6■□□□□ 9.1
PHF1-208ENST00000486845 HNRNPKP61978 463 aaKnown RBP eCLIP20.51■□□□□ 0.871e-7■□□□□ 9.1
PHF1-208ENST00000486845 PCBP2Q15366 365 aaKnown RBP eCLIP18.33■□□□□ 0.529e-6■□□□□ 8.7
Retrieved 35 of 35 RNA–protein pairs in 7.5 ms