RNA–Protein interactions for RNA: ENST00000486319.5

POLR2J3-204, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 1 (best)

Gene POLR2J3, Length 1,532 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-204ENST00000486319 NISCHQ9Y2I1 1504 aa33.85■■■■□ 3.01
POLR2J3-204ENST00000486319 CCDC180Q9P1Z9 1646 aa30.03■■■□□ 2.4
POLR2J3-204ENST00000486319 ABCC9O60706 1549 aa29.6■■■□□ 2.33
POLR2J3-204ENST00000486319 DCAF8L2P0C7V8 631 aa28.49■■■□□ 2.15
POLR2J3-204ENST00000486319 RB1CC1Q8TDY2 1594 aa28.39■■■□□ 2.13
POLR2J3-204ENST00000486319 NACADO15069 1562 aa28.34■■■□□ 2.13
POLR2J3-204ENST00000486319 ZCCHC6Q5VYS8 1495 aaKnown RBP28.16■■■□□ 2.1
POLR2J3-204ENST00000486319 MYO15BQ96JP2 1530 aa28.13■■■□□ 2.09
POLR2J3-204ENST00000486319 DCAF1Q9Y4B6 1507 aa27.97■■■□□ 2.07
POLR2J3-204ENST00000486319 PABPN1Q86U42 306 aaKnown RBP eCLIP27.72■■■□□ 2.03
POLR2J3-204ENST00000486319 UNC13AQ9UPW8 1703 aa27.62■■■□□ 2.01
POLR2J3-204ENST00000486319 BICRAQ9NZM4 1560 aa27.49■■□□□ 1.99
POLR2J3-204ENST00000486319 SCRIBQ14160 1630 aa27.47■■□□□ 1.99
POLR2J3-204ENST00000486319 DNAJC5BQ9UF47 199 aa27.3■■□□□ 1.96
POLR2J3-204ENST00000486319 SHROOM4Q9ULL8 1493 aa27.21■■□□□ 1.95
POLR2J3-204ENST00000486319 EIF4G1Q04637 1599 aaKnown RBP26.81■■□□□ 1.88
POLR2J3-204ENST00000486319 CC2D2AQ9P2K1 1620 aa26.72■■□□□ 1.87
POLR2J3-204ENST00000486319 CECR2Q9BXF3 1484 aa26.61■■□□□ 1.85
POLR2J3-204ENST00000486319 SMARCA4P51532 1647 aa26.25■■□□□ 1.79
POLR2J3-204ENST00000486319 BAZ1AQ9NRL2 1556 aaPredicted RBP26.24■■□□□ 1.79
POLR2J3-204ENST00000486319 NCAPD3P42695 1498 aa26.19■■□□□ 1.78
POLR2J3-204ENST00000486319 ATAD2BQ9ULI0 1458 aa26.19■■□□□ 1.78
POLR2J3-204ENST00000486319 SMARCA2P51531 1590 aa26.12■■□□□ 1.77
POLR2J3-204ENST00000486319 MROH2BQ7Z745 1585 aa26.09■■□□□ 1.77
POLR2J3-204ENST00000486319 HMGXB3Q12766 1538 aa25.99■■□□□ 1.75
POLR2J3-204ENST00000486319 PEG3Q9GZU2 1588 aa25.98■■□□□ 1.75
POLR2J3-204ENST00000486319 BAZ1BQ9UIG0 1483 aaKnown RBP25.97■■□□□ 1.75
POLR2J3-204ENST00000486319 RSF1Q96T23 1441 aaPredicted RBP25.8■■□□□ 1.72
POLR2J3-204ENST00000486319 WIZO95785 1651 aa25.77■■□□□ 1.72
POLR2J3-204ENST00000486319 SUPT5HO00267 1087 aaKnown RBP25.73■■□□□ 1.71
POLR2J3-204ENST00000486319 NESP48681 1621 aa25.58■■□□□ 1.69
POLR2J3-204ENST00000486319 ERCC6Q03468 1493 aa25.54■■□□□ 1.68
POLR2J3-204ENST00000486319 TOP2AP11388 1531 aaKnown RBP25.5■■□□□ 1.67
POLR2J3-204ENST00000486319 LAMC3Q9Y6N6 1575 aa25.46■■□□□ 1.67
POLR2J3-204ENST00000486319 CADPSQ9ULU8 1353 aa25.45■■□□□ 1.66
POLR2J3-204ENST00000486319 PDS5BQ9NTI5 1447 aa25.37■■□□□ 1.65
POLR2J3-204ENST00000486319 CCDC88BA6NC98 1476 aa25.26■■□□□ 1.63
POLR2J3-204ENST00000486319 CUX2O14529 1486 aa25.25■■□□□ 1.63
POLR2J3-204ENST00000486319 CFTRP13569 1480 aa25.25■■□□□ 1.63
POLR2J3-204ENST00000486319 KIF21AQ7Z4S6 1674 aa25.17■■□□□ 1.62
POLR2J3-204ENST00000486319 FANCD2Q9BXW9 1451 aa25.14■■□□□ 1.61
POLR2J3-204ENST00000486319 THOC2Q8NI27 1593 aaKnown RBP25.12■■□□□ 1.61
POLR2J3-204ENST00000486319 CEP164Q9UPV0 1460 aa25.09■■□□□ 1.61
POLR2J3-204ENST00000486319 MRC2Q9UBG0 1479 aa25.07■■□□□ 1.6
POLR2J3-204ENST00000486319 WDR62O43379 1518 aa24.95■■□□□ 1.59
POLR2J3-204ENST00000486319 PRDM2Q13029 1718 aa24.89■■□□□ 1.57
POLR2J3-204ENST00000486319 URB2Q14146 1524 aaKnown RBP24.86■■□□□ 1.57
POLR2J3-204ENST00000486319 ABCC8Q09428 1581 aa24.71■■□□□ 1.55
POLR2J3-204ENST00000486319 TOPBP1Q92547 1522 aa24.7■■□□□ 1.55
POLR2J3-204ENST00000486319 CHIC1Q5VXU3 224 aa24.7■■□□□ 1.54
POLR2J3-204ENST00000486319 DNAJC5Q9H3Z4 198 aa24.66■■□□□ 1.54
POLR2J3-204ENST00000486319 DNMBPQ6XZF7 1577 aa24.63■■□□□ 1.53
POLR2J3-204ENST00000486319 IFT140Q96RY7 1462 aa24.58■■□□□ 1.53
POLR2J3-204ENST00000486319 POLA1P09884 1462 aaPredicted RBP24.49■■□□□ 1.51
POLR2J3-204ENST00000486319 ZNF608Q9ULD9 1512 aaPredicted RBP24.48■■□□□ 1.51
POLR2J3-204ENST00000486319 CUX1P39880 1505 aa24.47■■□□□ 1.51
POLR2J3-204ENST00000486319 SOGA1O94964 1423 aa24.45■■□□□ 1.5
POLR2J3-204ENST00000486319 FGD5Q6ZNL6 1462 aa24.42■■□□□ 1.5
POLR2J3-204ENST00000486319 RAD54L2Q9Y4B4 1467 aa24.41■■□□□ 1.5
POLR2J3-204ENST00000486319 TARBP1Q13395 1621 aaKnown RBP24.39■■□□□ 1.49
POLR2J3-204ENST00000486319 AQRO60306 1485 aaKnown RBP eCLIP24.36■■□□□ 1.494e-8■■■■□ 22.5
POLR2J3-204ENST00000486319 WRNQ14191 1432 aaPredicted RBP eCLIP24.33■■□□□ 1.491e-6■■■■■ 58.5
POLR2J3-204ENST00000486319 TDRD9Q8NDG6 1382 aaKnown RBP24.33■■□□□ 1.49
POLR2J3-204ENST00000486319 EIF4G3O43432 1585 aaKnown RBP24.31■■□□□ 1.48
POLR2J3-204ENST00000486319 OSCARQ8IYS5 282 aa24.3■■□□□ 1.48
POLR2J3-204ENST00000486319 TRIM41Q8WV44 630 aa24.24■■□□□ 1.47
POLR2J3-204ENST00000486319 TOP2BQ02880 1626 aa24.22■■□□□ 1.47
POLR2J3-204ENST00000486319 SYNJ1O43426 1573 aa24.21■■□□□ 1.47
POLR2J3-204ENST00000486319 WDR97A6NE52 1622 aa24.18■■□□□ 1.46
POLR2J3-204ENST00000486319 BIVM-ERCC5R4GMW8 1640 aa24.18■■□□□ 1.46
POLR2J3-204ENST00000486319 ABCA10Q8WWZ4 1543 aa24.18■■□□□ 1.46
POLR2J3-204ENST00000486319 FBLN2P98095 1184 aa24.17■■□□□ 1.46
POLR2J3-204ENST00000486319 GRIN2BQ13224 1484 aa24.13■■□□□ 1.45
POLR2J3-204ENST00000486319 GAPVD1Q14C86 1478 aa24.13■■□□□ 1.45
POLR2J3-204ENST00000486319 SNAPC4Q5SXM2 1469 aa24.09■■□□□ 1.45
POLR2J3-204ENST00000486319 CHMP7Q8WUX9 453 aaPredicted RBP24.07■■□□□ 1.44
POLR2J3-204ENST00000486319 MAGI1Q96QZ7 1491 aaPredicted RBP24.06■■□□□ 1.44
POLR2J3-204ENST00000486319 ABCA5Q8WWZ7 1642 aa24.03■■□□□ 1.44
POLR2J3-204ENST00000486319 CHD1O14646 1710 aa23.98■■□□□ 1.43
POLR2J3-204ENST00000486319 SYNJ2O15056 1496 aa23.98■■□□□ 1.43
POLR2J3-204ENST00000486319 PBRM1Q86U86 1689 aa23.96■■□□□ 1.43
POLR2J3-204ENST00000486319 ERICH3Q5RHP9 1530 aa23.88■■□□□ 1.41
POLR2J3-204ENST00000486319 FHAD1B1AJZ9 1412 aa23.86■■□□□ 1.41
POLR2J3-204ENST00000486319 KIF27Q86VH2 1401 aa23.85■■□□□ 1.41
POLR2J3-204ENST00000486319 ADAMTS12P58397 1594 aa23.81■■□□□ 1.4
POLR2J3-204ENST00000486319 GRIN2AQ12879 1464 aa23.81■■□□□ 1.4
POLR2J3-204ENST00000486319 ARHGEF11O15085 1522 aa23.8■■□□□ 1.4
POLR2J3-204ENST00000486319 IGF1RP08069 1367 aa23.79■■□□□ 1.4
POLR2J3-204ENST00000486319 RIMBP3CA6NJZ7 1639 aa23.77■■□□□ 1.4
POLR2J3-204ENST00000486319 RIMBP3BA6NNM3 1639 aa23.77■■□□□ 1.4
POLR2J3-204ENST00000486319 RIMBP3Q9UFD9 1639 aa23.77■■□□□ 1.4
POLR2J3-204ENST00000486319 CLASP1Q7Z460 1538 aa23.77■■□□□ 1.4
POLR2J3-204ENST00000486319 FAM9AQ8IZU1 332 aaPredicted RBP23.74■■□□□ 1.39
POLR2J3-204ENST00000486319 LOC105371045A0A1W2PR82 267 aa23.71■■□□□ 1.39
POLR2J3-204ENST00000486319 NUP160Q12769 1436 aa23.71■■□□□ 1.39
POLR2J3-204ENST00000486319 EEA1Q15075 1411 aa23.71■■□□□ 1.39
POLR2J3-204ENST00000486319 CYB5RLQ6IPT4 315 aa23.7■■□□□ 1.38
POLR2J3-204ENST00000486319 CEP170Q5SW79 1584 aa23.65■■□□□ 1.38
POLR2J3-204ENST00000486319 CARMIL1Q5VZK9 1371 aa23.64■■□□□ 1.37
POLR2J3-204ENST00000486319 ARAP1Q96P48 1450 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms